BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2586.p (404 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_02882328.1| putative transcriptional regulator, GntR fami... 419 e-115 ref|ZP_04948244.1| Transcriptional regulator [Burkholderia dolos... 404 e-110 gb|EGC99553.1| aminotransferase, class I and II [Burkholderia sp... 404 e-110 ref|ZP_04942439.1| Aminotransferase, class I and II [Burkholderi... 394 e-107 ref|YP_837130.1| aminotransferase, class I and II [Burkholderia ... 394 e-107 >ref|ZP_02882328.1| putative transcriptional regulator, GntR family [Burkholderia graminis C4D1M] gb|EDT12573.1| putative transcriptional regulator, GntR family [Burkholderia graminis C4D1M] Length = 405 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 222/399 (55%), Positives = 274/399 (68%), Gaps = 6/399 (1%) Query: 5 YRFNPAFQSPQGSPIRELFKYTQQPGMISFAGGYPAPALFDTQGLAKSAATLLDSAAAAC 64 Y F FQ+P GSPIRELFKY +PGMISFAGGYPA LFD GL ++AA C Sbjct: 2 YEFTAPFQNPSGSPIRELFKYLGEPGMISFAGGYPASDLFDVDGLKQAAARAYHDPNL-C 60 Query: 65 LQYGATEGAAQLAQVLKQVTRARIGGADPGELIVTTGSQQGFELLLRILLEPGDGVVIER 124 LQYG T+G L L Q+ R +P E++VTTGSQQG +LLLR+L+ PGD VV E+ Sbjct: 61 LQYGPTDGLPLLKHQLIQLMARRNVSCEPNEMLVTTGSQQGLDLLLRVLVSPGDVVVTEQ 120 Query: 125 PCYPAAIQALRLAHAELLEIPGDAQGMDTDALEALLLAG--ARPKLLYLVPSFANPTGAT 182 P YPA +QALRL A+++ +P DA G+D L LL +G ARPKLLY VP+FANPTGAT Sbjct: 121 PAYPATLQALRLQQAKIVTVPVDAHGIDVARLATLLASGTFARPKLLYTVPTFANPTGAT 180 Query: 183 LPLARRRHLLALAERYQFIVIEDDPYGQLRFSGQAEPPLLQVAQEIEGARDWLVYLSSLS 242 + RR LL LA +YQF+++EDDPYG LRFSG A P +L +A E++GARDW+V+ +SLS Sbjct: 181 ITRERRIALLKLAVQYQFLIVEDDPYGDLRFSGDAVPSILSLASEVDGARDWVVHFASLS 240 Query: 243 KIVAPGLRIGWMCGPSEILRRAVIAKQTGDLCSAPWMQMVAAQYLQAGHLQAHLPHIIAT 302 KIVAPGLR+GW P+EI RR VIAKQT DLCSAPW Q +AA+YL G L+ HLP I A Sbjct: 241 KIVAPGLRVGWTIAPTEITRRCVIAKQTVDLCSAPWTQAIAAEYLADGALERHLPRITAM 300 Query: 303 YRERCAIMLSSLREAFGDRLSLIAPEGGMFIWASWKD---GTDATALLQTAVRHNVMYVP 359 Y +C + ++L GD L PEGGMF+WA + G DA+ALLQ A+ + VM+VP Sbjct: 301 YGRKCEALCNALHAQVGDALEFHRPEGGMFVWARLSESGNGIDASALLQRAIGNKVMFVP 360 Query: 360 GSAFYATPSDPGHWRLSFANAQPQEIIEGVTRLRRAHAE 398 G AF+A D RLSFA +I EGVTRL+RA+ E Sbjct: 361 GKAFFADNVDAASLRLSFAAPGIADIEEGVTRLKRAYGE 399 >ref|ZP_04948244.1| Transcriptional regulator [Burkholderia dolosa AUO158] gb|EAY71415.1| Transcriptional regulator [Burkholderia dolosa AUO158] Length = 399 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 216/397 (54%), Positives = 270/397 (68%), Gaps = 4/397 (1%) Query: 5 YRFNPAFQSPQGSPIRELFKYTQQPGMISFAGGYPAPALFDTQGLAKSAATLLDSAAAAC 64 Y F P+FQ P GSPIRELFKY +PGMISFAGGYPA LFD GL +AA + C Sbjct: 2 YAFTPSFQQPAGSPIRELFKYLSEPGMISFAGGYPASDLFDVDGL-NAAAARAYAQPVRC 60 Query: 65 LQYGATEGAAQLAQVLKQVTRARIGGADPGELIVTTGSQQGFELLLRILLEPGDGVVIER 124 LQYG T+G A+L Q L + R EL+VTTGSQQG +LLLR+++ PGD V+ E+ Sbjct: 61 LQYGPTDGLAELKQQLIALMARRGAACTASELLVTTGSQQGLDLLLRVMVSPGDVVLTEQ 120 Query: 125 PCYPAAIQALRLAHAELLEIPGDAQGMDTDALEALLLAG--ARPKLLYLVPSFANPTGAT 182 P YPA +QA+R+ HA ++ +P D G+D D L LL +G +PKLLY VP+FANPTGAT Sbjct: 121 PAYPATLQAMRMQHARIVTLPVDGDGLDVDRLGTLLASGELTQPKLLYTVPTFANPTGAT 180 Query: 183 LPLARRRHLLALAERYQFIVIEDDPYGQLRFSGQAEPPLLQVAQEIEGARDWLVYLSSLS 242 L RR LL LA +Y+F+++EDDPYG LRF+G+A P LL +A E++GARDW+V+ +SLS Sbjct: 181 LARERRMKLLRLAVQYRFLIVEDDPYGDLRFAGEAVPSLLALAGEVDGARDWIVHFASLS 240 Query: 243 KIVAPGLRIGWMCGPSEILRRAVIAKQTGDLCSAPWMQMVAAQYLQAGHLQAHLPHIIAT 302 KIVAPGLR+GW P++I RR VIAKQT DLCSAPW Q AA+YL G L+ HLP I Sbjct: 241 KIVAPGLRVGWTIAPADIARRCVIAKQTVDLCSAPWTQATAAEYLADGALERHLPRIAHA 300 Query: 303 YRERCAIMLSSLREAFGDRLSLIAPEGGMFIWASWKDGTDATALLQTAVRHNVMYVPGSA 362 YR +C M +LR+ FGD + PEGGMF+WA + ALLQ A+ + V++VPGSA Sbjct: 301 YRRKCDAMCDALRDGFGDAIEFHRPEGGMFVWARL-GAVSSAALLQHAIANKVVFVPGSA 359 Query: 363 FYATPSDPGHWRLSFANAQPQEIIEGVTRLRRAHAEA 399 F+A D RLSFA I EGV RL RA+ A Sbjct: 360 FFADNVDDASLRLSFAAPDVDAIREGVARLVRAYGAA 396 >gb|EGC99553.1| aminotransferase, class I and II [Burkholderia sp. TJI49] Length = 399 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 217/397 (54%), Positives = 272/397 (68%), Gaps = 4/397 (1%) Query: 5 YRFNPAFQSPQGSPIRELFKYTQQPGMISFAGGYPAPALFDTQGLAKSAATLLDSAAAAC 64 Y F P+FQ+P GSPIRELFKY +PGMISFAGGYPA LFD GL +AA + C Sbjct: 2 YAFTPSFQNPAGSPIRELFKYLAEPGMISFAGGYPASDLFDVDGL-DAAAARAYAQPVRC 60 Query: 65 LQYGATEGAAQLAQVLKQVTRARIGGADPGELIVTTGSQQGFELLLRILLEPGDGVVIER 124 LQYG T+G A+L Q L + R P EL+VTTGSQQG +LLLR+++ PGD V+ E+ Sbjct: 61 LQYGPTDGLAELKQQLIALMARRGVACAPAELLVTTGSQQGLDLLLRVMVSPGDVVLTEQ 120 Query: 125 PCYPAAIQALRLAHAELLEIPGDAQGMDTDALEALLLAGA--RPKLLYLVPSFANPTGAT 182 P YPA +QA+RL A + IP D G+D D LEALL +GA +PKLLY VP+FANPTGAT Sbjct: 121 PAYPATLQAMRLQQARIATIPVDGAGLDVDRLEALLASGAIAQPKLLYTVPTFANPTGAT 180 Query: 183 LPLARRRHLLALAERYQFIVIEDDPYGQLRFSGQAEPPLLQVAQEIEGARDWLVYLSSLS 242 L RR LL LA +Y+F+++EDDPYG LRF+G+A P +L +A E++GARDW+V+ +SLS Sbjct: 181 LTRERRVKLLRLAVQYRFLIVEDDPYGDLRFAGEAVPSMLALADEVDGARDWIVHFASLS 240 Query: 243 KIVAPGLRIGWMCGPSEILRRAVIAKQTGDLCSAPWMQMVAAQYLQAGHLQAHLPHIIAT 302 KIVAPGLR+GW P+EI RR VIAKQT DLCS PW Q AA+YL G L+ HLP I A Sbjct: 241 KIVAPGLRVGWTIAPAEIARRCVIAKQTVDLCSTPWTQATAAEYLADGALERHLPRIAAA 300 Query: 303 YRERCAIMLSSLREAFGDRLSLIAPEGGMFIWASWKDGTDATALLQTAVRHNVMYVPGSA 362 Y+ +C M +LR+ GD ++ PEGGMF+WA + LLQ A+ + V++VPG+A Sbjct: 301 YKRKCDAMCDALRDGLGDAITFHRPEGGMFVWARI-GAVSSAVLLQQAIANKVVFVPGNA 359 Query: 363 FYATPSDPGHWRLSFANAQPQEIIEGVTRLRRAHAEA 399 F+A D RLSFA I EGV RL RA+ A Sbjct: 360 FFADNVDDASLRLSFAAPDVDSIREGVARLVRAYGAA 396 >ref|ZP_04942439.1| Aminotransferase, class I and II [Burkholderia cenocepacia PC184] gb|EAY65610.1| Aminotransferase, class I and II [Burkholderia cenocepacia PC184] Length = 399 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 218/397 (54%), Positives = 272/397 (68%), Gaps = 4/397 (1%) Query: 5 YRFNPAFQSPQGSPIRELFKYTQQPGMISFAGGYPAPALFDTQGLAKSAATLLDSAAAAC 64 Y F P+FQ+P GSPIRELFKY +PGMISFAGGYPA LFD GL +AA + C Sbjct: 2 YAFTPSFQNPAGSPIRELFKYLSEPGMISFAGGYPASDLFDVDGL-NAAAERAYAQPVRC 60 Query: 65 LQYGATEGAAQLAQVLKQVTRARIGGADPGELIVTTGSQQGFELLLRILLEPGDGVVIER 124 LQYG T+G A+L Q L + R G P EL+VTTGSQQG +LLLR+++ PGD V+ E+ Sbjct: 61 LQYGPTDGLAELKQQLIALMARRGVGCTPAELLVTTGSQQGLDLLLRVMVSPGDVVLTEQ 120 Query: 125 PCYPAAIQALRLAHAELLEIPGDAQGMDTDALEALLLAGA--RPKLLYLVPSFANPTGAT 182 P YPA +QA+RL A ++ IP D +G+D D L A L +GA +PKLLY VP+FANPTGAT Sbjct: 121 PAYPATLQAMRLQQARIVTIPVDGEGLDVDRLAAQLASGAIAQPKLLYTVPTFANPTGAT 180 Query: 183 LPLARRRHLLALAERYQFIVIEDDPYGQLRFSGQAEPPLLQVAQEIEGARDWLVYLSSLS 242 L RR LL LA +Y+F+++EDDPYG LRF+G+A P +L +A E++GARDWLV+ +SLS Sbjct: 181 LTRERRLTLLRLAVQYRFLIVEDDPYGDLRFAGEAVPSMLALAGEVDGARDWLVHFASLS 240 Query: 243 KIVAPGLRIGWMCGPSEILRRAVIAKQTGDLCSAPWMQMVAAQYLQAGHLQAHLPHIIAT 302 KIVAPGLR+GW P+EI RR VIAKQT DLCS PW Q AA+YL G L+ HLP I A Sbjct: 241 KIVAPGLRVGWTIAPAEITRRCVIAKQTVDLCSTPWTQATAAEYLADGALERHLPRITAA 300 Query: 303 YRERCAIMLSSLREAFGDRLSLIAPEGGMFIWASWKDGTDATALLQTAVRHNVMYVPGSA 362 YR +C M +LR+ FGD + PEGGMF+WA + LLQ A+ + +++VPG A Sbjct: 301 YRRKCDAMCDALRDGFGDAIEFHRPEGGMFVWARL-GAVSSDVLLQQAIANKIVFVPGKA 359 Query: 363 FYATPSDPGHWRLSFANAQPQEIIEGVTRLRRAHAEA 399 F+A D RLSFA I EGV RL RA+ A Sbjct: 360 FFADNVDAASLRLSFAAPDVDAIREGVARLVRAYGAA 396 >ref|YP_837130.1| aminotransferase, class I and II [Burkholderia cenocepacia HI2424] gb|ABK10237.1| aminotransferase, class I and II [Burkholderia cenocepacia HI2424] Length = 399 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 217/397 (54%), Positives = 271/397 (68%), Gaps = 4/397 (1%) Query: 5 YRFNPAFQSPQGSPIRELFKYTQQPGMISFAGGYPAPALFDTQGLAKSAATLLDSAAAAC 64 Y F P+FQ+P GSPIRELFKY +PGMISFAGGYPA LFD GL +AA + C Sbjct: 2 YAFTPSFQNPAGSPIRELFKYLSEPGMISFAGGYPASDLFDVDGL-NAAAERAYAQPVRC 60 Query: 65 LQYGATEGAAQLAQVLKQVTRARIGGADPGELIVTTGSQQGFELLLRILLEPGDGVVIER 124 LQYG T+G A+L Q L + R P EL+VTTGSQQG +LLLR+++ PGD V+ E+ Sbjct: 61 LQYGPTDGLAELKQQLIALMARRGVACAPAELLVTTGSQQGLDLLLRVMVSPGDVVLTEQ 120 Query: 125 PCYPAAIQALRLAHAELLEIPGDAQGMDTDALEALLLAGA--RPKLLYLVPSFANPTGAT 182 P YPA +QA+RL A ++ IP D +G+D D L A L +GA +PKLLY VP+FANPTGAT Sbjct: 121 PAYPATLQAMRLQQARIVTIPVDGEGLDVDRLAAQLASGAIAQPKLLYTVPTFANPTGAT 180 Query: 183 LPLARRRHLLALAERYQFIVIEDDPYGQLRFSGQAEPPLLQVAQEIEGARDWLVYLSSLS 242 L RR LL LA +Y+F+++EDDPYG LRF+G+A P +L +A E++GARDWLV+ +SLS Sbjct: 181 LTRERRLKLLRLAVQYRFLIVEDDPYGDLRFAGEAVPSMLALAGEVDGARDWLVHFASLS 240 Query: 243 KIVAPGLRIGWMCGPSEILRRAVIAKQTGDLCSAPWMQMVAAQYLQAGHLQAHLPHIIAT 302 KIVAPGLR+GW P+EI RR VIAKQT DLCS PW Q AA+YL G L+ HLP I A Sbjct: 241 KIVAPGLRVGWTIAPAEITRRCVIAKQTVDLCSTPWTQATAAEYLADGALERHLPRITAA 300 Query: 303 YRERCAIMLSSLREAFGDRLSLIAPEGGMFIWASWKDGTDATALLQTAVRHNVMYVPGSA 362 YR +C M +LR+ FGD + PEGGMF+WA + LLQ A+ + +++VPG A Sbjct: 301 YRRKCDAMCDALRDGFGDAIEFHRPEGGMFVWARL-GAVSSDVLLQQAIANKIVFVPGKA 359 Query: 363 FYATPSDPGHWRLSFANAQPQEIIEGVTRLRRAHAEA 399 F+A D RLSFA I EGV RL RA+ A Sbjct: 360 FFADNVDAASLRLSFAAPDIDAIREGVARLVRAYGAA 396