BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2583.p (329 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004754455.1| LysR family transcriptional regulator [Colli... 464 e-128 ref|YP_004847382.1| LysR family transcriptional regulator [Pseud... 294 1e-77 ref|ZP_03698711.1| transcriptional regulator, LysR family [Lutie... 293 3e-77 ref|YP_001527094.1| transcriptional regulator [Azorhizobium caul... 285 1e-74 ref|ZP_06096882.1| transcriptional regulator [Brucella sp. 83/13... 273 4e-71 >ref|YP_004754455.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK63632.1| transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 337 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 236/305 (77%), Positives = 265/305 (86%) Query: 21 APSPSAPPSASGLRPMRRFIPSTSCLIAFDTSARHMSFTKAANELHMTQGAVSRQVAILE 80 + + +A + S R MRRFIPSTSCLIAFDT+ARH+SFTKAANELHMTQGAVSRQ AILE Sbjct: 29 STASTAAHTYSAPRKMRRFIPSTSCLIAFDTAARHLSFTKAANELHMTQGAVSRQAAILE 88 Query: 81 EYLNVKLFERINRRLILTEAGRDYAAQVSTILKQIEMATFQVMTYNSLASVLNLAILPTF 140 +YL VKLFERINRRLILT AG +YAAQV+ ILK+IEMATFQVM + + VLNLA LPTF Sbjct: 89 DYLGVKLFERINRRLILTAAGAEYAAQVAAILKEIEMATFQVMAHKNSGGVLNLATLPTF 148 Query: 141 GVKWLIPRLAKFAAAYPDVLLNLSTEVLPFDFNTRQVDAAIHFGEPDWPDTVMVRLMGEE 200 GVKWLIPRLAKF AA+PDV+LNLSTEVLPFDFN+R VDAAIHFGEP+WP VMVRLMGEE Sbjct: 149 GVKWLIPRLAKFTAAHPDVILNLSTEVLPFDFNSRAVDAAIHFGEPNWPGAVMVRLMGEE 208 Query: 201 VVPVCSKALAEGLGSVGDLAKVTLLQHTTRPQAWQDWFRHVGVDCPNALSGPRFEQLAMV 260 V+PVCS L + + DL ++TLLQHTTRPQAW DWF HVGV CP+ALSGPRFEQL+MV Sbjct: 209 VLPVCSLELGRKIKRIEDLPEMTLLQHTTRPQAWHDWFSHVGVACPDALSGPRFEQLSMV 268 Query: 261 IQAAVAGMGVALMPKFMVETEISLGQLHVPFPLAVKSPQSYYLVYPEKNAGKAAILKFRE 320 IQAA AG+GVALMPKF+VETEI+LGQLHVPFP AVKSPQSYYL YPEKNA KAA++KF+E Sbjct: 269 IQAAAAGLGVALMPKFLVETEIALGQLHVPFPFAVKSPQSYYLTYPEKNASKAAVIKFQE 328 Query: 321 WILSE 325 WIL E Sbjct: 329 WILGE 333 >ref|YP_004847382.1| LysR family transcriptional regulator [Pseudogulbenkiania sp. NH8B] dbj|BAK76968.1| transcriptional regulator, LysR family [Pseudogulbenkiania sp. NH8B] Length = 320 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 149/299 (49%), Positives = 198/299 (66%), Gaps = 8/299 (2%) Query: 36 MRRFIPSTSCLIAFDTSARHMSFTKAANELHMTQGAVSRQVAILEEYLNVKLFERINRRL 95 MRR +PS L F+ + RH+SFT+AA EL++TQ AVSRQ+ LE+++ LFER+ +RL Sbjct: 1 MRRTLPSLMALQCFEAAVRHLSFTRAAEELNLTQSAVSRQIRALEDFIGRPLFERVKQRL 60 Query: 96 ILTEAGRDYAAQVSTILKQIEMATFQVMTYNSLASVLNLAILPTFGVKWLIPRLAKFAAA 155 +LT AG YAA V +L + E AT Q+M Y+ +L +A+LPTFG +WL+PRL FAA Sbjct: 61 VLTVAGEAYAAAVQDVLDRAEAATLQLMAYSGEGGMLTIAMLPTFGSRWLVPRLGDFAAR 120 Query: 156 YPDVLLNLSTEVLPFDFNTRQVDAAIHFGEPDWPDTVMVRLMGEEVVPVCSKALAEG--- 212 YPD+ LNL T+V PFDF+ + D AIHFG WP + RLMGE++VPVC+ AL G Sbjct: 121 YPDIQLNLVTQVRPFDFDKVEADVAIHFGPALWPGAICHRLMGEDIVPVCAPALLGGRPH 180 Query: 213 LGSVGDLAKVTLLQHTTRPQAWQDWFRHVGVDC-----PNALSGPRFEQLAMVIQAAVAG 267 L V ++ TLLQHTTRPQAW DW G++ LSGPRFE MVIQAAVAG Sbjct: 181 LDDVREILDYTLLQHTTRPQAWNDWLHAAGIEGLTGNEAGLLSGPRFEHFFMVIQAAVAG 240 Query: 268 MGVALMPKFMVETEISLGQLHVPFPLAVKSPQSYYLVYPEKNAGKAAILKFREWILSEA 326 +G+A++P F+VE E+ G+L + V+S +YYLV+P A + FREW+L +A Sbjct: 241 LGIAVLPHFLVEEELQSGRLVLALDKPVRSQHAYYLVHPATKADLYKVRVFREWLLEQA 299 >ref|ZP_03698711.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] gb|EEG08705.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] Length = 318 Score = 293 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 149/299 (49%), Positives = 198/299 (66%), Gaps = 8/299 (2%) Query: 36 MRRFIPSTSCLIAFDTSARHMSFTKAANELHMTQGAVSRQVAILEEYLNVKLFERINRRL 95 MRR +PS L F+ + RH+SFT+AA EL++TQ AVSRQ+ LE+++ LFER+ +RL Sbjct: 1 MRRTLPSLMALQCFEAAVRHLSFTRAAEELNLTQSAVSRQIRALEDFIGRPLFERVKQRL 60 Query: 96 ILTEAGRDYAAQVSTILKQIEMATFQVMTYNSLASVLNLAILPTFGVKWLIPRLAKFAAA 155 +LT AG YAA V +L + E AT Q+M Y+ +L +A+LPTFG +WL+PRL FAA Sbjct: 61 VLTVAGEAYAAAVQDVLDRAEAATLQLMAYSGEGGMLTIAMLPTFGSRWLVPRLGDFAAR 120 Query: 156 YPDVLLNLSTEVLPFDFNTRQVDAAIHFGEPDWPDTVMVRLMGEEVVPVCSKALAEG--- 212 YPD+ LNL T+V PFDF+ + D AIHFG WP + RLMGE++VPVC+ AL G Sbjct: 121 YPDIQLNLVTQVRPFDFDKVEADVAIHFGPALWPGAICHRLMGEDIVPVCAPALLGGRPH 180 Query: 213 LGSVGDLAKVTLLQHTTRPQAWQDWFRHVGVDC-----PNALSGPRFEQLAMVIQAAVAG 267 L V ++ TLLQHTTRPQAW DW G++ LSGPRFE MVIQAAVAG Sbjct: 181 LDDVREILAYTLLQHTTRPQAWNDWLHAAGIEGLTGNEAGLLSGPRFEHFFMVIQAAVAG 240 Query: 268 MGVALMPKFMVETEISLGQLHVPFPLAVKSPQSYYLVYPEKNAGKAAILKFREWILSEA 326 +G+A++P F+VE E+ G+L + V+S +YYLV+P A + FREW+L +A Sbjct: 241 LGIAVLPHFLVEEELQSGRLVLALDKPVRSQHAYYLVHPATKADLYKVRVFREWLLEQA 299 >ref|YP_001527094.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] dbj|BAF90176.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 357 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 139/292 (47%), Positives = 190/292 (65%), Gaps = 2/292 (0%) Query: 34 RPMRRFIPSTSCLIAFDTSARHMSFTKAANELHMTQGAVSRQVAILEEYLNVKLFERINR 93 R RF+PS S L AF+ +ARH SF++AA ELH+TQGAVSRQ+ LEE + + LFER+ + Sbjct: 54 RVRHRFLPSISTLTAFEAAARHQSFSRAAAELHLTQGAVSRQIRHLEEQIGLDLFERVRQ 113 Query: 94 RLILTEAGRDYAAQVSTILKQIEMATFQVMTYNSLASVLNLAILPTFGVKWLIPRLAKFA 153 R++LT+ GR Y A++ +L+ + AT + MTY A + LA+LPTF +WL+PRL F Sbjct: 114 RVVLTDGGRLYLAEIRPLLQALSDATQRAMTYAGGAGSIQLAVLPTFATRWLMPRLPDFL 173 Query: 154 AAYPDVLLNLSTEVLPFDFNTRQVDAAIHFGEPDWPDTVMVRLMGEEVVPVCSKALAE-- 211 A +PD+ +N + + PFDF +DAAIH+G+P WP + LM EEVVPVCS A + Sbjct: 174 ARFPDITINFISRIAPFDFAAEPLDAAIHYGDPVWPGAICEHLMDEEVVPVCSPAFRDRH 233 Query: 212 GLGSVGDLAKVTLLQHTTRPQAWQDWFRHVGVDCPNALSGPRFEQLAMVIQAAVAGMGVA 271 L LA V LLQ TTRP W +W G P+ GPRFEQ M+ +AA AG+GV Sbjct: 234 ALDRPERLAGVVLLQQTTRPHLWDEWLALAGASHPSPFRGPRFEQFTMIAEAAAAGLGVG 293 Query: 272 LMPKFMVETEISLGQLHVPFPLAVKSPQSYYLVYPEKNAGKAAILKFREWIL 323 L+P+F VE E++ G+L +PF + S ++YY+VYPE AG A+ F WI+ Sbjct: 294 LVPRFFVEEEVAQGRLVLPFDRPMCSDKAYYVVYPEAKAGGGAVTAFARWIV 345 >ref|ZP_06096882.1| transcriptional regulator [Brucella sp. 83/13] ref|ZP_07471000.1| LysR family transcriptional regulator [Brucella sp. NF 2653] gb|EEZ33000.1| transcriptional regulator [Brucella sp. 83/13] gb|EFM62957.1| LysR family transcriptional regulator [Brucella sp. NF 2653] Length = 310 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 143/293 (48%), Positives = 188/293 (64%), Gaps = 4/293 (1%) Query: 37 RRFIPSTSCLIAFDTSARHMSFTKAANELHMTQGAVSRQVAILEEYLNVKLFERINRRLI 96 RR +PSTS L AFD ARH SF+ AA+EL +TQGAVSRQ+A LEE L LF+R +R ++ Sbjct: 6 RRLLPSTSALAAFDAVARHESFSAAADELSLTQGAVSRQIASLEEQLGAALFDRTSRNVV 65 Query: 97 LTEAGRDYAAQVSTILKQIEMATFQVMTYNSLASVLNLAILPTFGVKWLIPRLAKFAAAY 156 L+EAGR Y + L I A+ QVM+ + LNLA LPTFG +WLIPR+ +F A Y Sbjct: 66 LSEAGRVYLQAIGPALASIRAASLQVMS-QMRGTTLNLAFLPTFGTRWLIPRIPRFVAQY 124 Query: 157 PDVLLNLSTEVLPFDFNTRQVDAAIHFGEPDWPDTVMVRLMGEEVVPVCSKALAEG--LG 214 P ++LN +T + FDF+ +DAAIH G+PDWP+ LM E V PVCS A + + Sbjct: 125 PHIILNFATRIGQFDFDREGLDAAIHIGQPDWPNAECTFLMDETVAPVCSPAFLKDHPVT 184 Query: 215 SVGDLAKVTLLQHTTRPQAWQDWFRHVGVDCPNALSGPRFEQLAMVIQAAVAGMGVALMP 274 S DL ++ L +RP AW+ WFR +G+ P G RFEQ + V QA VAG+G+ LMP Sbjct: 185 SPHDLLRLPLFNMASRPGAWEHWFRSLGITTP-VPGGMRFEQFSNVSQACVAGLGMGLMP 243 Query: 275 KFMVETEISLGQLHVPFPLAVKSPQSYYLVYPEKNAGKAAILKFREWILSEAQ 327 F++ +EI GQL V P VKSP SYY V P+ A A+ FR+W+L+E + Sbjct: 244 LFLIRSEIENGQLIVACPHTVKSPSSYYFVAPKTRAKTPAVTAFRDWLLAEVR 296