BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2582.p (412 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004754454.1| putative oxidoreductase protein [Collimonas ... 576 e-162 ref|YP_002541581.1| FAD-dependent oxidoreductase protein [Agroba... 338 1e-90 ref|YP_002827777.1| putative D-lactate dehydrogenase [Sinorhizob... 331 1e-88 ref|NP_387395.1| putative oxidoreductase protein [Sinorhizobium ... 328 1e-87 ref|YP_001328817.1| FAD linked oxidase domain-containing protein... 311 1e-82 >ref|YP_004754454.1| putative oxidoreductase protein [Collimonas fungivorans Ter331] gb|AEK63631.1| putative oxidoreductase protein [Collimonas fungivorans Ter331] Length = 472 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 281/412 (68%), Positives = 342/412 (83%), Gaps = 1/412 (0%) Query: 1 MRLCAAENIRLIPQGANTGLVGAASPDSSGLQLILSMERIKGVIDIDPVDGVIQAWAGTR 60 MRLCA+E IR+IPQGANTGLVGA+SPD SGL ++LSMERIKGV DIDPVD V+QA+AGTR Sbjct: 57 MRLCASEKIRIIPQGANTGLVGASSPDRSGLDVVLSMERIKGVTDIDPVDRVVQAYAGTR 116 Query: 61 LSDLNQALAPHGLCFPIDLGADPSVGGMLAANTGGARLIRYGDVRHNTLGLQALLMQPPG 120 LSDLNQAL H L FPIDL ADPS+GGMLAANTGGARLIRYGDVRHN LGL+ALL+ PPG Sbjct: 117 LSDLNQALKQHELYFPIDLAADPSIGGMLAANTGGARLIRYGDVRHNVLGLEALLIDPPG 176 Query: 121 ELLEMGNRLHKNNTGPDWKQLFIGTAGSYGIVTQAVLRAHPLPRQRATALIVPSSLEAGL 180 + L++ NRL KNNTGPDWKQ FIG+ G+YGI+TQA+L+ HPLP+Q ATAL+VP+SL+A Sbjct: 177 QRLDLTNRLRKNNTGPDWKQNFIGSGGAYGIITQALLQVHPLPQQCATALVVPASLQAAA 236 Query: 181 RLLQDAQAQFADFLTAFEGISRNALASVLRHLPQVNAPFDPLPDYALLVELSSSSAASEH 240 LL+DA+ F+DFL+AFEGIS NA+ +VL+H+P + APF+PLP Y L+ELSS+ S Sbjct: 237 LLLRDAERNFSDFLSAFEGISHNAMQAVLQHIPSIQAPFEPLPPYVFLIELSSARPRSAD 296 Query: 241 FDLDQLFMAWLERHFDDAI-DAVVDKPETLWRLRHAISDSVKQEGRIVAFDIAVSRSRMP 299 FDL++LF AWLE F D I DAV+DKPE LWR+RHAI+DSV+QEG+++AFDIAV RS++ Sbjct: 297 FDLEKLFGAWLEACFGDLILDAVIDKPEVLWRIRHAITDSVRQEGKVIAFDIAVPRSKLA 356 Query: 300 AFRAEALALVERDFAGAEVFDFGHWGDGGVHFNLAIPPAQQPQFPPERIEALRTALYDLV 359 FR EA+AL+E+ +AG +V+DFGHWGDGG+HFNL +PP +PP+RI ALR +YDL Sbjct: 357 LFRDEAIALLEQSYAGVKVYDFGHWGDGGLHFNLVLPPHLADDYPPQRIHALRQEIYDLA 416 Query: 360 AKSYQGSFSAEHGIGPFNQHYYQRYTQPEQRALASRVQAVFDPHCLLGNTRF 411 Y GSFSAEHG+GPFNQ +Y+RYT PE +ALA+RVQ VFDP LLG TRF Sbjct: 417 VHKYYGSFSAEHGVGPFNQEFYERYTAPESQALAARVQTVFDPAGLLGLTRF 468 >ref|YP_002541581.1| FAD-dependent oxidoreductase protein [Agrobacterium radiobacter K84] gb|ACM29984.1| FAD-dependent oxidoreductase protein [Agrobacterium radiobacter K84] Length = 473 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 183/415 (44%), Positives = 255/415 (61%), Gaps = 8/415 (1%) Query: 4 CAAENIRLIPQGANTGLVGAASPDSSGLQLILSMERIKGVIDIDPVDGVIQAWAGTRLSD 63 C +I +IPQ NTGLV ++PDSSG +++LS++R+ G ID + ++A AG RLSD Sbjct: 59 CVRHSIPIIPQSGNTGLVSGSTPDSSGREIVLSLDRLTGAFAIDIDNRSLRAGAGWRLSD 118 Query: 64 LNQALAPHGLCFPIDLGADPSVGGMLAANTGGARLIRYGDVRHNTLGLQALLMQPPGELL 123 +N+ L HGL FPIDLGADP +GGMLA NTGG+R ++YGDVR NTLGL +L G +L Sbjct: 119 VNRKLEEHGLFFPIDLGADPRLGGMLATNTGGSRFLKYGDVRRNTLGLTVVLADESGTVL 178 Query: 124 EMGNRLHKNNTGPDWKQLFIGTAGSYGIVTQAVLRAHPLPRQRATALIVPSSLEAGLRLL 183 ++ + L KNNTG DW+Q+FIGT+G++GI+T+ VL PLPRQ ATA +VP S + LL Sbjct: 179 DLASDLRKNNTGVDWRQIFIGTSGAFGIITECVLNLEPLPRQTATAYLVPKSDADVMPLL 238 Query: 184 QDAQAQFADFLTAFEGISRNALASVLRHLPQVNAPFD--PLPDYALLVELSSSSAASE-H 240 + + + +L+AFEG+S NA+++ L H+P + PF+ +P Y +L E+S S A E Sbjct: 239 RAMEERLGSYLSAFEGMSANAVSAALDHVPSLRNPFERGEVPAYVILAEVSRSWAPREGE 298 Query: 241 FDLDQLFMAWL----ERHFDDAIDAVVDKPETLWRLRHAISDSVKQEGRIVAFDIAVSRS 296 LDQ+ L E DA V +W LRHA+S+ VK G+++AFD++ R Sbjct: 299 QSLDQVLETVLAEIWESEAAPLADAFVGPAHEMWALRHALSEGVKHSGKLIAFDLSFRRG 358 Query: 297 RMPAFRAEALALVERDFAGAEVFDFGHWGDGGVHFNLAIPPAQQPQFPPERIEALRTALY 356 + F A A + F + DFGH GDGGVHFNL +P + P+ LR ++ Sbjct: 359 DIMTFCAHMRAEMPALFPEIRICDFGHIGDGGVHFNLVVPKDSEIASDPDFERRLRDFVF 418 Query: 357 DLVAKSYQGSFSAEHGIGPFNQHYYQRYTQPEQRALASRVQAVFDPHCLLGNTRF 411 + + + GSFSAEH IG NQ YY YT + R LA ++ + P LG RF Sbjct: 419 KVAVEDFGGSFSAEHAIGRKNQPYYDLYTAEKLRDLAGGLKVLLSPGG-LGAVRF 472 >ref|YP_002827777.1| putative D-lactate dehydrogenase [Sinorhizobium fredii NGR234] gb|ACP27024.1| putative D-lactate dehydrogenase [Sinorhizobium fredii NGR234] Length = 473 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 182/415 (43%), Positives = 253/415 (60%), Gaps = 8/415 (1%) Query: 4 CAAENIRLIPQGANTGLVGAASPDSSGLQLILSMERIKGVIDIDPVDGVIQAWAGTRLSD 63 C I LIPQ NTGLV ++PD SG + +LS++R+ ++D + ++ AG RLSD Sbjct: 59 CVRNGIALIPQAGNTGLVSGSTPDVSGSEAVLSLDRLTRQFELDLDNRSVRVDAGFRLSD 118 Query: 64 LNQALAPHGLCFPIDLGADPSVGGMLAANTGGARLIRYGDVRHNTLGLQALLMQPPGELL 123 LN+ L H L FPIDLGADP +GGM+A NTGG+R ++YGDVR NTLGL+ +L G +L Sbjct: 119 LNRTLEEHDLFFPIDLGADPRIGGMVATNTGGSRFLKYGDVRRNTLGLKVVLADEAGTVL 178 Query: 124 EMGNRLHKNNTGPDWKQLFIGTAGSYGIVTQAVLRAHPLPRQRATALIVPSSLEAGLRLL 183 ++ L KNNTG DWKQ+FIGT+G++GIVT+ VL LP+Q ATA +VP+ L LL Sbjct: 179 DLDCDLRKNNTGVDWKQIFIGTSGAFGIVTECVLNLERLPKQVATAFLVPAGGAQVLPLL 238 Query: 184 QDAQAQFADFLTAFEGISRNALASVLRHLPQVNAPFDP--LPDYALLVELSSSSAA-SEH 240 + + +L+AFEG+S+NA+A+ H+P + PF +PDY +L E+S SSA +E Sbjct: 239 NAMEERLGAYLSAFEGMSKNAIAAAFTHVPSLKNPFQGGHIPDYVILAEISRSSAPRAEE 298 Query: 241 FDLDQLFMAWLER--HFDDA--IDAVVDKPETLWRLRHAISDSVKQEGRIVAFDIAVSRS 296 LD + L ++A DA V P W LRHA+S+ VK G+++AFD++ R Sbjct: 299 QPLDAVLETALAEIWELEEAPLADAFVGPPHETWALRHALSEGVKHLGKLIAFDVSFRRG 358 Query: 297 RMPAFRAEALALVERDFAGAEVFDFGHWGDGGVHFNLAIPPAQQPQFPPERIEALRTALY 356 + AF A + F G V DFGH GDGGVHFNL + P + LR ++ Sbjct: 359 DIMAFCDHMKAEMPEKFPGVTVCDFGHIGDGGVHFNLVVAKDSPLLTDPSFEQRLREWVF 418 Query: 357 DLVAKSYQGSFSAEHGIGPFNQHYYQRYTQPEQRALASRVQAVFDPHCLLGNTRF 411 + + Y+GSFSAEH IG NQ YY YT + + +A+ ++ V P LG+ RF Sbjct: 419 TVAVEQYRGSFSAEHAIGRRNQAYYDFYTPEKLKEMAAGLKTVTSPG-KLGSVRF 472 >ref|NP_387395.1| putative oxidoreductase protein [Sinorhizobium meliloti 1021] ref|YP_004550602.1| D-lactate dehydrogenase (cytochrome) [Sinorhizobium meliloti AK83] emb|CAC47868.1| Putative oxidoreductase [Sinorhizobium meliloti 1021] gb|AEG05953.1| D-lactate dehydrogenase (cytochrome) [Sinorhizobium meliloti BL225C] gb|AEG54988.1| D-lactate dehydrogenase (cytochrome) [Sinorhizobium meliloti AK83] gb|AEH80647.1| putative oxidoreductase [Sinorhizobium meliloti SM11] Length = 473 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 178/416 (42%), Positives = 257/416 (61%), Gaps = 10/416 (2%) Query: 4 CAAENIRLIPQGANTGLVGAASPDSSGLQLILSMERIKGVIDIDPVDGVIQAWAGTRLSD 63 C I LIPQ NTGLV ++PD SG ++++S++R+ +D + ++ AG RLS+ Sbjct: 59 CVRSGIALIPQSGNTGLVSGSTPDESGSEVVVSLDRLTRQFALDLDNRSVRVDAGFRLSE 118 Query: 64 LNQALAPHGLCFPIDLGADPSVGGMLAANTGGARLIRYGDVRHNTLGLQALLMQPPGELL 123 LN+ L HGL FPIDLGADP +GGM+A NTGG+R ++YGDVR NTLGL+ +L G +L Sbjct: 119 LNRRLEEHGLFFPIDLGADPRIGGMIATNTGGSRFLKYGDVRRNTLGLKVVLADEAGTVL 178 Query: 124 EMGNRLHKNNTGPDWKQLFIGTAGSYGIVTQAVLRAHPLPRQRATALIVPSSLEAGLRLL 183 ++G+ L KNNTG DWKQ+FIGT+G++GIVT+ VL LP+Q ATA +VP+S L LL Sbjct: 179 DLGSDLRKNNTGVDWKQIFIGTSGAFGIVTECVLNLERLPKQTATAFLVPASGAHVLPLL 238 Query: 184 QDAQAQFADFLTAFEGISRNALASVLRHLPQVNAPFD--PLPDYALLVELSSSSAASE-H 240 + + + +L+AFEG+SRNA+A+ H+P + PF +PDY +L E+S +S+ E Sbjct: 239 KAMEERLGAYLSAFEGMSRNAIAAAFAHVPALKNPFQGGKVPDYVILAEISRTSSPREGE 298 Query: 241 FDLDQLFMAWLERHFDDA----IDAVVDKPETLWRLRHAISDSVKQEGRIVAFDIAVSRS 296 LD + + L ++ DA+V P +W LRHA+S+ VK G+++AFD++ R Sbjct: 299 QPLDAVLESVLAEIWEMEEVLLADALVGPPHEIWALRHALSEGVKHLGKLIAFDLSFRRG 358 Query: 297 RMPAFRAEALALVERDFAGAEVFDFGHWGDGGVHFNLAIPPAQQPQFPPERIEA-LRTAL 355 + AF + F G V DFGH GDGGVHFNL + P E LR + Sbjct: 359 DIMAFCDHMKTEMPEKFPGVTVCDFGHIGDGGVHFNLVV-AKDSPLLADATFEQRLREWV 417 Query: 356 YDLVAKSYQGSFSAEHGIGPFNQHYYQRYTQPEQRALASRVQAVFDPHCLLGNTRF 411 + + + Y GSFSAEH +G NQ +Y YT + + +A+ ++ + P LG+ RF Sbjct: 418 FAVAVEQYHGSFSAEHALGRRNQAFYDLYTPEKLKNMAAGLKTLTSPG-KLGSVRF 472 >ref|YP_001328817.1| FAD linked oxidase domain-containing protein [Sinorhizobium medicae WSM419] gb|ABR61982.1| FAD linked oxidase domain protein [Sinorhizobium medicae WSM419] Length = 473 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 171/416 (41%), Positives = 251/416 (60%), Gaps = 10/416 (2%) Query: 4 CAAENIRLIPQGANTGLVGAASPDSSGLQLILSMERIKGVIDIDPVDGVIQAWAGTRLSD 63 C I L+PQ NTGLV ++PD SG +++LS++R+ +DP + ++ AG RLS+ Sbjct: 59 CVRNGIALVPQAGNTGLVSGSTPDGSGEEVVLSLDRLTRRFALDPDNRSVRVDAGFRLSE 118 Query: 64 LNQALAPHGLCFPIDLGADPSVGGMLAANTGGARLIRYGDVRHNTLGLQALLMQPPGELL 123 LN+ L + L FPIDLGADP +GGM+A NTGG+R ++YGDVR N LGL+ +L G +L Sbjct: 119 LNRRLEEYELFFPIDLGADPRIGGMVATNTGGSRFLKYGDVRRNILGLKVVLADEAGTVL 178 Query: 124 EMGNRLHKNNTGPDWKQLFIGTAGSYGIVTQAVLRAHPLPRQRATALIVPSSLEAGLRLL 183 ++ + L KNNTG DWKQ+FIGT+G++GIVT+ VL LP+Q ATA +VP+S L LL Sbjct: 179 DLHSDLRKNNTGVDWKQIFIGTSGAFGIVTECVLNLERLPKQTATAFLVPASGAHVLPLL 238 Query: 184 QDAQAQFADFLTAFEGISRNALASVLRHLPQVNAPF--DPLPDYALLVELSSSSA---AS 238 + + + +L+AFEG+S+NA+A L H+P + PF +P+Y +L E+S S A Sbjct: 239 KAMEERLGAYLSAFEGMSKNAIAGALAHVPSLKNPFPGGNVPEYVILAEISRSWAPRDGE 298 Query: 239 EHFD--LDQLFMAWLERHFDDAIDAVVDKPETLWRLRHAISDSVKQEGRIVAFDIAVSRS 296 + D L+ + E DA+V P +W LRHA+S+ VK G+++AFD++ R Sbjct: 299 QPLDAVLESVLAEIWETEEAPLADALVGPPHEVWALRHALSEGVKHLGKLIAFDLSFRRG 358 Query: 297 RMPAFRAEALALVERDFAGAEVFDFGHWGDGGVHFNLAIPPAQQPQFPPERIEA-LRTAL 355 + F A + + F + DFGH GDGGVHFN+ + P E LR + Sbjct: 359 DIMTFCDHMKAEMPQKFPAVTICDFGHIGDGGVHFNVVV-AKDSPLLADAAFEQHLREWV 417 Query: 356 YDLVAKSYQGSFSAEHGIGPFNQHYYQRYTQPEQRALASRVQAVFDPHCLLGNTRF 411 + + Y GSFSAEH +G NQ +Y YT + + +A+ ++ + P LG+ RF Sbjct: 418 VAIAVEQYHGSFSAEHALGRRNQAFYDFYTPEKLKNIAAGLKTLTSPG-KLGSVRF 472