BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2580.p (312 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774370.1| transcription regulator protein [Herbaspiril... 431 e-119 ref|YP_003777812.1| LysR family transcription regulator protein ... 382 e-104 ref|YP_003774716.1| transcription regulator protein [Herbaspiril... 321 1e-85 emb|CAQ18336.1| hypothetical protein RSMK05208 [Ralstonia solana... 247 2e-63 ref|YP_002256979.1| hypothetical protein RSIPO_03278 [Ralstonia ... 244 2e-62 >ref|YP_003774370.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62462.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 313 Score = 431 bits (1108), Expect = e-119, Method: Composition-based stats. Identities = 223/304 (73%), Positives = 256/304 (84%), Gaps = 2/304 (0%) Query: 1 MKNQAMDYLPRMVIFSRVVELGAFSKAARELGLTSSSVSQHISALEAILGTTLLHRTTRK 60 MKN AMDYLPRMVIFSRVVELGAFSKAARELGLTSSSVSQHISALEA+LGTTLLHRTTRK Sbjct: 1 MKNNAMDYLPRMVIFSRVVELGAFSKAARELGLTSSSVSQHISALEAMLGTTLLHRTTRK 60 Query: 61 LSLTEAGQGFYAHCARIVALANEARDATESLHKELVGELRIASSSFMAPEYLVPALDHFI 120 LSLTEAG FYA+C+RIV LA+EAR TESLHKEL+GELRIA+SSFMA EYLVPALD FI Sbjct: 61 LSLTEAGHSFYANCSRIVDLASEARQLTESLHKELLGELRIAASSFMASEYLVPALDDFI 120 Query: 121 RSHPQLRISIHVSDHNVDLMDHSVDLALRVGKTPGPGDIPLARMGAVLCASPDYLQARAA 180 R+HP+LRI+I V+DHN+DLMD SVDLALRVGKT D+ LA + AVLCASP YL+A A Sbjct: 121 RAHPKLRINIDVNDHNIDLMDKSVDLALRVGKTSSENDVYLASLPAVLCASPAYLRAHAP 180 Query: 181 IRRPEDLLQHQMLFFTPHGPDAVVDLTLTNRAGQCAQLRLGPRVTANHARSIRQLAVQGH 240 IR PEDL QH LFFTPHG + V+++L NR GQCAQL L PRV+ANHARS+R+LA+QGH Sbjct: 181 IRHPEDLPQHDFLFFTPHG--SSVEVSLKNRGGQCAQLHLTPRVSANHARSLRRLALQGH 238 Query: 241 GVGRFLRSKVQDDLKSGRLVEVLPDWSLEGYCAFITTRHRDAVPAKILACIAQIQDYFAR 300 GV R L KVQ+DL +GRL VLPDW L+ YCAF+TT++R++ P KI+ CI ++ YF Sbjct: 239 GVARLLACKVQEDLDAGRLEVVLPDWELDVYCAFLTTKYRESPPQKIVKCIEHLEAYFRS 298 Query: 301 RHPA 304 RHPA Sbjct: 299 RHPA 302 >ref|YP_003777812.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65904.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 198/307 (64%), Positives = 243/307 (79%), Gaps = 2/307 (0%) Query: 1 MKNQAMDYLPRMVIFSRVVELGAFSKAARELGLTSSSVSQHISALEAILGTTLLHRTTRK 60 +KN MDYLPRMVIFSRVVE+G+FS AA LGL+SSSVSQHISALEA +G TLLHRTTRK Sbjct: 2 IKNDVMDYLPRMVIFSRVVEMGSFSGAASALGLSSSSVSQHISALEAAMGMTLLHRTTRK 61 Query: 61 LSLTEAGQGFYAHCARIVALANEARDATESLHKELVGELRIASSSFMAPEYLVPALDHFI 120 LSLTEAGQ FYA+CARIV LANEAR E+LHKE+VGELRIA+SSFMA EYLVPAL+ I Sbjct: 62 LSLTEAGQTFYANCARIVVLANEARQTAENLHKEVVGELRIATSSFMASEYLVPALEGLI 121 Query: 121 RSHPQLRISIHVSDHNVDLMDHSVDLALRVGKTPGPGDIPLARMGAVLCASPDYLQARAA 180 + +P+LRI+I V+DHNVDLM+ VD+ALR GK PGP D+ LA + +VLCA+P YLQ A Sbjct: 122 QQYPKLRINIDVNDHNVDLMEKGVDIALRAGKAPGPEDVFLAPLESVLCAAPAYLQRSAP 181 Query: 181 IRRPEDLLQHQMLFFTPHGPDAVVDLTLTNRAGQCAQLRLGPRVTANHARSIRQLAVQGH 240 IR PEDL+ H+ +FFTP G + ++L L +R GQ Q+RL PR++ NH S+ +L +QGH Sbjct: 182 IRTPEDLMGHEFMFFTPLG--STMELGLRDRHGQQVQMRLTPRISVNHTHSLHKLTLQGH 239 Query: 241 GVGRFLRSKVQDDLKSGRLVEVLPDWSLEGYCAFITTRHRDAVPAKILACIAQIQDYFAR 300 GV R L++KVQ+DL +GRL VLP+W+ GYCAF++T +RD VP K+L C+ IQDYF R Sbjct: 240 GVARLLQTKVQEDLDAGRLQRVLPEWTANGYCAFLSTNYRDQVPQKVLVCVEHIQDYFRR 299 Query: 301 RHPAEDE 307 RHP E Sbjct: 300 RHPLRQE 306 >ref|YP_003774716.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62808.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 310 Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 163/298 (54%), Positives = 210/298 (70%), Gaps = 2/298 (0%) Query: 1 MKNQAMDYLPRMVIFSRVVELGAFSKAARELGLTSSSVSQHISALEAILGTTLLHRTTRK 60 M+ +D L RM F+RVVELGAFS+AA+ LGLT+SSVSQH+ ALE L TLL+R+TRK Sbjct: 1 MRKLGIDDLARMATFARVVELGAFSRAAKALGLTTSSVSQHVRALELSLQATLLNRSTRK 60 Query: 61 LSLTEAGQGFYAHCARIVALANEARDATESLHKELVGELRIASSSFMAPEYLVPALDHFI 120 LSLTEAG FY HCA IV A+EA + L+ E+VGE+RIA SSFM+ +YL+PAL FI Sbjct: 61 LSLTEAGTLFYKHCAHIVTAASEAEQSIAVLNNEMVGEVRIAVSSFMSTKYLIPALHDFI 120 Query: 121 RSHPQLRISIHVSDHNVDLMDHSVDLALRVGKTPGPGDIPLARMGAVLCASPDYLQARAA 180 R +P++R+ + V+D+NVDL++ +DLALR G+ PGDI L R VLCASP YL R Sbjct: 121 RHNPKVRLRLEVADNNVDLIEQRIDLALRAGRNRQPGDIFLGRFSDVLCASPSYLAVRPP 180 Query: 181 IRRPEDLLQHQMLFFTPHGPDAVVDLTLTNRAGQCAQLRLGPRVTANHARSIRQLAVQGH 240 I P DLL H L F PHG L +N A ++RL PR++ANHARS+R LA+ GH Sbjct: 181 IHSPVDLLHHDFLLFNPHGEPCF--LEFSNAASGTVRVRLQPRISANHARSLRYLALDGH 238 Query: 241 GVGRFLRSKVQDDLKSGRLVEVLPDWSLEGYCAFITTRHRDAVPAKILACIAQIQDYF 298 G+ R L K+ DDL++GRLV+VLPDW+L G+ ++T RHRD +P K+ C+ IQ YF Sbjct: 239 GITRLLECKIDDDLRAGRLVQVLPDWTLGGFDVYVTVRHRDNMPLKVRQCLEHIQHYF 296 >emb|CAQ18336.1| hypothetical protein RSMK05208 [Ralstonia solanacearum MolK2] Length = 298 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 137/297 (46%), Positives = 189/297 (63%), Gaps = 4/297 (1%) Query: 6 MDYLPRMVIFSRVVELGAFSKAARELGLTSSSVSQHISALEAILGTTLLHRTTRKLSLTE 65 MD L RM IF+RVVELGAF++AARELGLT+SS+SQH+ ALEA LG TLLHR+TRKLSLTE Sbjct: 1 MDVLKRMAIFARVVELGAFNRAARELGLTTSSISQHVRALEAELGVTLLHRSTRKLSLTE 60 Query: 66 AGQGFYAHCARIVALANEARDATESLHKELVGELRIASSSFMAPEYLVPALDHFIRSHPQ 125 AG+ +Y CA +V A + +L E GELRI + S +A ++LVPAL FI +HP+ Sbjct: 61 AGRVYYEECANVVHAAARGQQKVAALRDEPAGELRITAPSELAHQHLVPALRDFIAAHPR 120 Query: 126 LRISIHVSDHNVDLMDHSVDLALRVGKTPGPGDIP--LARMGAVLCASPDYLQARAAIRR 183 L + + D +DL++H VDLA+R+G+ + +A ++CA+PDYL+ Sbjct: 121 LAVRFELGDEKIDLVEHRVDLAVRIGELRDSSLVARQIAWFDELICAAPDYLERTGPPTT 180 Query: 184 PEDLLQHQMLFFTPHGPDAVVDLTLTNRAGQCAQLRLGPRVTANHARSIRQLAVQGHGVG 243 P+ L L FTP G A V L N G +LR+ R+ N A++++ LA+ GHGV Sbjct: 181 PQALADLDWLIFTPLGEPAFVH--LRNAQGHEVRLRVHGRLATNQAQTLKALALDGHGVA 238 Query: 244 RFLRSKVQDDLKSGRLVEVLPDWSLEGYCAFITTRHRDAVPAKILACIAQIQDYFAR 300 R L++ + +L GRLV +LPDW L G+ + T RDA P K+ CI ++ YFA+ Sbjct: 239 RLLKADIGTELAQGRLVPLLPDWRLAGFGVYAITPRRDAQPLKVTRCIEHLRTYFAQ 295 >ref|YP_002256979.1| hypothetical protein RSIPO_03278 [Ralstonia solanacearum IPO1609] emb|CAQ58860.1| hypothetical protein RSIPO_03278 [Ralstonia solanacearum IPO1609] Length = 298 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 136/297 (45%), Positives = 188/297 (63%), Gaps = 4/297 (1%) Query: 6 MDYLPRMVIFSRVVELGAFSKAARELGLTSSSVSQHISALEAILGTTLLHRTTRKLSLTE 65 MD L RM IF+RVVELGAF++AARELGLT+SS+SQH+ ALEA LG TLLHR+TRKLSLTE Sbjct: 1 MDVLKRMAIFARVVELGAFNRAARELGLTTSSISQHVRALEAELGVTLLHRSTRKLSLTE 60 Query: 66 AGQGFYAHCARIVALANEARDATESLHKELVGELRIASSSFMAPEYLVPALDHFIRSHPQ 125 AG+ +Y CA +V A + +L E GELRI + S +A ++LVPAL FI +HP+ Sbjct: 61 AGRVYYEECANVVHAAARGQQKVAALRDEPAGELRITAPSELAHQHLVPALRDFIAAHPR 120 Query: 126 LRISIHVSDHNVDLMDHSVDLALRVGKTPGPGDIP--LARMGAVLCASPDYLQARAAIRR 183 L + + D +DL++H VDLA+R+G+ + +A ++CA+P YL+ Sbjct: 121 LAVRFELGDEKIDLVEHRVDLAVRIGELRDSSLVARQIAWFDELICAAPAYLERTGPPTT 180 Query: 184 PEDLLQHQMLFFTPHGPDAVVDLTLTNRAGQCAQLRLGPRVTANHARSIRQLAVQGHGVG 243 P+ L L FTP G A V L N G +LR+ R+ N A++++ LA+ GHGV Sbjct: 181 PQALADLDWLIFTPLGEPAFVH--LRNTQGHEVRLRVHGRLATNQAQTLKALALDGHGVA 238 Query: 244 RFLRSKVQDDLKSGRLVEVLPDWSLEGYCAFITTRHRDAVPAKILACIAQIQDYFAR 300 R L++ + +L GRLV +LPDW L G+ + T RDA P K+ CI ++ YFA+ Sbjct: 239 RLLKADIGTELAQGRLVPLLPDWRLAGFGVYAITPRRDAQPLKVTRCIEHLRTYFAQ 295