BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2577.p (202 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004350040.1| TetR family regulatory protein [Burkholderia... 192 2e-47 ref|YP_001682163.1| TetR family transcriptional regulator [Caulo... 174 5e-42 ref|YP_003911165.1| regulatory protein TetR [Burkholderia sp. CC... 174 6e-42 ref|YP_001773898.1| TetR family transcriptional regulator [Burkh... 168 4e-40 ref|YP_626287.1| TetR family transcriptional regulator [Burkhold... 168 4e-40 >ref|YP_004350040.1| TetR family regulatory protein [Burkholderia gladioli BSR3] gb|AEA64528.1| TetR family regulatory protein [Burkholderia gladioli BSR3] Length = 198 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 112/195 (57%), Positives = 130/195 (66%), Gaps = 1/195 (0%) Query: 8 SGPGRPREFEIDAAVESAMQVFWTRGYHGTSLVDLIDGTGLSRGSLYKAFGDKHGLFLDA 67 +G GRPREFE+D A AM VFW RGY G SL DLI GTGLSRGSLYKAFGDK GL L A Sbjct: 5 AGLGRPREFELDDAARDAMNVFWDRGYEGASLPDLIAGTGLSRGSLYKAFGDKKGLLLAA 64 Query: 68 LDRYIAQSLERLLGTLQQPGSAKAAIRKTLMGLAEMSCRAEGRRGCLLVATATEMVSHDE 127 LD Y+A L+ L QPG+ K AIR +L+ A +S A GRRGCL+VA TEM +HD Sbjct: 65 LDLYMADGLKATADILAQPGAVKDAIRDSLLRYASLSVGAAGRRGCLVVAMTTEMAAHDA 124 Query: 128 LVADRVKAMIDRIRKAYAEAIRRGQASGEIAAHHDPQTLATLIVCFTHGMRTLGKVDAID 187 VA+R M R+++ YA AI RGQASGEI A D Q LA +VC GMR LGK + Sbjct: 125 EVAERSGRMFRRLQQLYAGAIVRGQASGEI-AERDEQVLARFLVCQIEGMRVLGKTGMHE 183 Query: 188 KQMRAVVDQAMRLLD 202 M A+VD MR+LD Sbjct: 184 ADMLALVDSTMRILD 198 >ref|YP_001682163.1| TetR family transcriptional regulator [Caulobacter sp. K31] gb|ABZ69665.1| transcriptional regulator, TetR family [Caulobacter sp. K31] Length = 218 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 98/184 (53%), Positives = 119/184 (64%) Query: 11 GRPREFEIDAAVESAMQVFWTRGYHGTSLVDLIDGTGLSRGSLYKAFGDKHGLFLDALDR 70 GRPREF+ DAAVE AM VFW+ GYHGTSL DL+ T LSRGSLY AFGDKHGLFL ALDR Sbjct: 26 GRPREFDPDAAVERAMGVFWSHGYHGTSLPDLLSATKLSRGSLYAAFGDKHGLFLRALDR 85 Query: 71 YIAQSLERLLGTLQQPGSAKAAIRKTLMGLAEMSCRAEGRRGCLLVATATEMVSHDELVA 130 YI ++L RL L SA A +R L G + + GRRGCL+VATA E+ +HD V Sbjct: 86 YIDEALTRLDSELDSRKSALAGVRTCLAGYVDRTSGVAGRRGCLVVATAMELAAHDSEVE 145 Query: 131 DRVKAMIDRIRKAYAEAIRRGQASGEIAAHHDPQTLATLIVCFTHGMRTLGKVDAIDKQM 190 R+ + AEA+ R QASGE+A +P+T A L+VC GMR +GK + Sbjct: 146 QRILRFFGAMETRLAEAMARAQASGELADGVEPKTAARLLVCLVEGMRVVGKTGSDRAVS 205 Query: 191 RAVV 194 +AVV Sbjct: 206 QAVV 209 >ref|YP_003911165.1| regulatory protein TetR [Burkholderia sp. CCGE1003] gb|ADN61874.1| regulatory protein TetR [Burkholderia sp. CCGE1003] Length = 204 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 107/195 (54%), Positives = 127/195 (65%), Gaps = 1/195 (0%) Query: 8 SGPGRPREFEIDAAVESAMQVFWTRGYHGTSLVDLIDGTGLSRGSLYKAFGDKHGLFLDA 67 +G GRPREFE+ A AM VFW RGY G SL DLI GTGLSRGSLYKAFGDK L L A Sbjct: 11 AGAGRPREFEVSDAARDAMNVFWDRGYEGASLPDLIAGTGLSRGSLYKAFGDKKALLLAA 70 Query: 68 LDRYIAQSLERLLGTLQQPGSAKAAIRKTLMGLAEMSCRAEGRRGCLLVATATEMVSHDE 127 LD Y+A L+ L QPG K AIR +L+ A +S GRRGCL+VA TE+ +HD Sbjct: 71 LDLYMADGLKATADILSQPGPVKQAIRDSLLRYARLSVGEAGRRGCLVVAMTTELAAHDA 130 Query: 128 LVADRVKAMIDRIRKAYAEAIRRGQASGEIAAHHDPQTLATLIVCFTHGMRTLGKVDAID 187 VA+R M R+++ YA AI R QASGEI A D Q LA L+VC GMR LGK + Sbjct: 131 EVAERTGRMFRRLQQLYAGAIVRAQASGEI-AEQDEQVLARLLVCQVQGMRVLGKTGVPE 189 Query: 188 KQMRAVVDQAMRLLD 202 M A+VD+ MR+L+ Sbjct: 190 SDMLALVDRTMRILE 204 >ref|YP_001773898.1| TetR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gb|ACA95403.1| transcriptional regulator, TetR family [Burkholderia cenocepacia MC0-3] Length = 198 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 107/195 (54%), Positives = 125/195 (64%), Gaps = 1/195 (0%) Query: 8 SGPGRPREFEIDAAVESAMQVFWTRGYHGTSLVDLIDGTGLSRGSLYKAFGDKHGLFLDA 67 +G GRPREFE+ A AM VFW RGY G SL DLI GTGLSRGSLYKAFGDK L L A Sbjct: 5 AGVGRPREFELGDAARDAMDVFWDRGYEGASLPDLIAGTGLSRGSLYKAFGDKKALLLAA 64 Query: 68 LDRYIAQSLERLLGTLQQPGSAKAAIRKTLMGLAEMSCRAEGRRGCLLVATATEMVSHDE 127 LD Y+A L+ L QPG K AIR +L+ A +S GRRGCL VA TE+ + D Sbjct: 65 LDLYMADGLKATADILSQPGPVKDAIRDSLLRYARLSVGEAGRRGCLAVAMTTELAARDA 124 Query: 128 LVADRVKAMIDRIRKAYAEAIRRGQASGEIAAHHDPQTLATLIVCFTHGMRTLGKVDAID 187 VA+R M R+++ YA AI RGQASGEI D Q LA L+VC GMR LGK + Sbjct: 125 DVAERTGRMFRRLQQLYAGAIVRGQASGEI-PEQDEQVLARLLVCQVEGMRVLGKTGVPE 183 Query: 188 KQMRAVVDQAMRLLD 202 M A+VD+ MR+LD Sbjct: 184 HDMLALVDRTMRILD 198 >ref|YP_626287.1| TetR family transcriptional regulator [Burkholderia cenocepacia AU 1054] ref|YP_840310.1| TetR family transcriptional regulator [Burkholderia cenocepacia HI2424] gb|ABF81314.1| transcriptional regulator, TetR family [Burkholderia cenocepacia AU 1054] gb|ABK13417.1| transcriptional regulator, TetR family [Burkholderia cenocepacia HI2424] Length = 198 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 107/195 (54%), Positives = 125/195 (64%), Gaps = 1/195 (0%) Query: 8 SGPGRPREFEIDAAVESAMQVFWTRGYHGTSLVDLIDGTGLSRGSLYKAFGDKHGLFLDA 67 +G GRPREFE+ A AM VFW RGY G SL DLI GTGLSRGSLYKAFGDK L L A Sbjct: 5 AGVGRPREFELGDAARDAMDVFWDRGYEGASLPDLIAGTGLSRGSLYKAFGDKKALLLAA 64 Query: 68 LDRYIAQSLERLLGTLQQPGSAKAAIRKTLMGLAEMSCRAEGRRGCLLVATATEMVSHDE 127 LD Y+A L+ L QPG K AIR +L+ A +S GRRGCL VA TE+ + D Sbjct: 65 LDLYMADGLKATADILSQPGPVKDAIRDSLLRYARLSIGEAGRRGCLAVAMTTELAARDA 124 Query: 128 LVADRVKAMIDRIRKAYAEAIRRGQASGEIAAHHDPQTLATLIVCFTHGMRTLGKVDAID 187 VA+R M R+++ YA AI RGQASGEI D Q LA L+VC GMR LGK + Sbjct: 125 DVAERTGRMFRRLQQLYAGAIVRGQASGEI-PEQDEQVLARLLVCQVEGMRVLGKTGVPE 183 Query: 188 KQMRAVVDQAMRLLD 202 M A+VD+ MR+LD Sbjct: 184 HDMLALVDRTMRILD 198