BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2575.p (194 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004676989.1| TetR family transcriptional regulator [Hypho... 268 3e-70 ref|ZP_08284186.1| transcriptional regulator, TetR family [Paeni... 243 8e-63 ref|NP_770646.1| transcriptional regulator [Bradyrhizobium japon... 242 2e-62 ref|YP_004613586.1| TetR family transcriptional regulator [Mesor... 242 3e-62 ref|NP_353309.1| TetR family transcriptional regulator [Agrobact... 235 2e-60 >ref|YP_004676989.1| TetR family transcriptional regulator [Hyphomicrobium sp. MC1] emb|CCB66423.1| Transcriptional regulator, TetR family [Hyphomicrobium sp. MC1] Length = 194 Score = 268 bits (685), Expect = 3e-70, Method: Composition-based stats. Identities = 125/193 (64%), Positives = 157/193 (81%) Query: 1 MNKSTSTADDILACARSLIIAGGYNGFSYADIADVVGIRKPSIHHHFPSKAELVKKLVET 60 M+ ++TADDILACAR+LII GGYNGFSYADIADVVGIRKPSIHHHFPSK +LV+ LV Sbjct: 1 MSNVSTTADDILACARTLIIVGGYNGFSYADIADVVGIRKPSIHHHFPSKVDLVRTLVSR 60 Query: 61 HRAQTELGVENLARVITAPRDQLRAYVDHWKACIEDASAPFCVAALLASEMPILPEEVAE 120 +R + E+G+ L R ++ P + L+AY +WKACI DASAPFCV ALLA E+P+LPEE+A Sbjct: 61 YRQEAEVGIAELERNVSDPVELLQAYTGYWKACITDASAPFCVCALLAGELPVLPEEIAL 120 Query: 121 QVRGYFRFLSGWLTAVLERGLANKSLKLAHAPRVEAEVLMATVHGAMLSARAYGDAEIFG 180 +VRG+FR LS WLT+V ERG+ SL+L+ +PRVEAEV +AT+HGAMLSARAYGD ++FG Sbjct: 121 EVRGHFRVLSTWLTSVFERGMQLGSLRLSSSPRVEAEVFIATIHGAMLSARAYGDPQVFG 180 Query: 181 TIMDPQLARLSAK 193 I +P L R+S + Sbjct: 181 QITNPLLDRVSVR 193 >ref|ZP_08284186.1| transcriptional regulator, TetR family [Paenibacillus sp. HGF5] gb|EGG31194.1| transcriptional regulator, TetR family [Paenibacillus sp. HGF5] Length = 194 Score = 243 bits (621), Expect = 8e-63, Method: Composition-based stats. Identities = 121/191 (63%), Positives = 144/191 (75%) Query: 1 MNKSTSTADDILACARSLIIAGGYNGFSYADIADVVGIRKPSIHHHFPSKAELVKKLVET 60 M S +T+DDIL CARSLII GGYNGFSYADIADVVGIRK SIHHHFPSK +LV+ LV Sbjct: 1 MKNSPTTSDDILTCARSLIIDGGYNGFSYADIADVVGIRKASIHHHFPSKVDLVRTLVAR 60 Query: 61 HRAQTELGVENLARVITAPRDQLRAYVDHWKACIEDASAPFCVAALLASEMPILPEEVAE 120 +R + E G+EN+ + +QLR YV +WKACI DASAP CV ALLAS++P+LPEEVA Sbjct: 61 YREEAEAGMENIELHVPDALEQLRFYVSYWKACIADASAPICVCALLASQLPVLPEEVAM 120 Query: 121 QVRGYFRFLSGWLTAVLERGLANKSLKLAHAPRVEAEVLMATVHGAMLSARAYGDAEIFG 180 +VR +FR+LS WLT+VL+RG L+L P EAE MATVHGAMLSARAYGD +F Sbjct: 121 EVREHFRYLSTWLTSVLDRGSRLGQLQLRSTPHAEAEAFMATVHGAMLSARAYGDPNMFS 180 Query: 181 TIMDPQLARLS 191 + DP L RL+ Sbjct: 181 FVTDPLLDRLA 191 >ref|NP_770646.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC49271.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 194 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 122/194 (62%), Positives = 151/194 (77%) Query: 1 MNKSTSTADDILACARSLIIAGGYNGFSYADIADVVGIRKPSIHHHFPSKAELVKKLVET 60 M +STAD+ILACAR+LIIAGGYNGFSYADIAD+VGIRKPSIHHHF SK +LV+ LV Sbjct: 1 MTNVSSTADEILACARTLIIAGGYNGFSYADIADIVGIRKPSIHHHFASKVDLVRTLVSR 60 Query: 61 HRAQTELGVENLARVITAPRDQLRAYVDHWKACIEDASAPFCVAALLASEMPILPEEVAE 120 +R + G+ + R I P QL++Y+ +W+ACI+DA+APFCV ALLASE+P+LPEEVA Sbjct: 61 YREEAAAGLSAIERNIPDPGAQLKSYLAYWEACIKDATAPFCVCALLASELPLLPEEVAL 120 Query: 121 QVRGYFRFLSGWLTAVLERGLANKSLKLAHAPRVEAEVLMATVHGAMLSARAYGDAEIFG 180 +VR +FR L+ WLT+V+ERG L+L+ RVEAE MATVHGAMLSARAYGD ++FG Sbjct: 121 EVRAHFRALASWLTSVIERGKRQGRLQLSGTARVEAEGFMATVHGAMLSARAYGDPKMFG 180 Query: 181 TIMDPQLARLSAKK 194 I P L RLSA + Sbjct: 181 VITRPLLERLSATR 194 >ref|YP_004613586.1| TetR family transcriptional regulator [Mesorhizobium opportunistum WSM2075] gb|AEH89492.1| transcriptional regulator, TetR family [Mesorhizobium opportunistum WSM2075] Length = 195 Score = 242 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 119/192 (61%), Positives = 147/192 (76%) Query: 1 MNKSTSTADDILACARSLIIAGGYNGFSYADIADVVGIRKPSIHHHFPSKAELVKKLVET 60 M+ ++T+DDILACARSLI+AGGYNGFSYADIADVVGIRK SIHHHFPSK +LV+ LV Sbjct: 1 MSNLSTTSDDILACARSLIVAGGYNGFSYADIADVVGIRKASIHHHFPSKVDLVRTLVAR 60 Query: 61 HRAQTELGVENLARVITAPRDQLRAYVDHWKACIEDASAPFCVAALLASEMPILPEEVAE 120 +R + E G+ NL ++ P +QLR YV +W+ACI DASAPFCV ALLA ++P+LP EV Sbjct: 61 YREEAEAGMANLELQVSDPLEQLRLYVGYWEACIADASAPFCVCALLAGQLPVLPGEVGL 120 Query: 121 QVRGYFRFLSGWLTAVLERGLANKSLKLAHAPRVEAEVLMATVHGAMLSARAYGDAEIFG 180 +VR +FR LS WL +VLERG + L L PR EAE MATVHGAMLSARAYGD ++FG Sbjct: 121 EVRAHFRSLSAWLASVLERGARHGQLHLMTTPRAEAEAFMATVHGAMLSARAYGDPKVFG 180 Query: 181 TIMDPQLARLSA 192 + P L R+++ Sbjct: 181 AVTGPLLERIAS 192 >ref|NP_353309.1| TetR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gb|AAK86094.1| transcriptional regulator, TetR family [Agrobacterium tumefaciens str. C58] Length = 192 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 117/192 (60%), Positives = 140/192 (72%) Query: 1 MNKSTSTADDILACARSLIIAGGYNGFSYADIADVVGIRKPSIHHHFPSKAELVKKLVET 60 M S ADDIL CAR+LII GGYN FSYADI+ VVGIR SIHHHFPSK++LV KLV Sbjct: 1 MKNPQSKADDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQ 60 Query: 61 HRAQTELGVENLARVITAPRDQLRAYVDHWKACIEDASAPFCVAALLASEMPILPEEVAE 120 +R + E G+ L + I+ P +QLRAY+ +W+ CI DA+ PFCV ALLASE+P+LPE V Sbjct: 61 YRQEAEAGIAELEKNISDPLEQLRAYIGYWEGCIADATHPFCVCALLASEIPVLPETVVL 120 Query: 121 QVRGYFRFLSGWLTAVLERGLANKSLKLAHAPRVEAEVLMATVHGAMLSARAYGDAEIFG 180 +VR +FR LS WLTAVLERG+A L L R AE+ MATVHGAMLSARA+GDA FG Sbjct: 121 EVRAHFRSLSDWLTAVLERGIAQGRLVLTGTARANAEIFMATVHGAMLSARAHGDAATFG 180 Query: 181 TIMDPQLARLSA 192 I P L R++A Sbjct: 181 AITRPMLERITA 192