BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2567.p         (218 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001901182.1| hypothetical protein Rpic_3631 [Ralstonia pi...   119   4e-25
ref|YP_003944962.1| hypothetical protein PPSC2_c0738 [Paenibacil...    74   2e-11
ref|XP_002539994.1| conserved hypothetical protein [Ricinus comm...    65   9e-09
ref|XP_002539366.1| conserved hypothetical protein [Ricinus comm...    56   3e-06

>ref|YP_001901182.1| hypothetical protein Rpic_3631 [Ralstonia pickettii 12J]
 gb|ACD28750.1| hypothetical protein Rpic_3631 [Ralstonia pickettii 12J]
          Length = 199

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 75/193 (38%), Positives = 102/193 (52%), Gaps = 5/193 (2%)

Query: 1   MIHFIRTLFGRTRVPLFKRRKEKNDALADKISWVAEVISDAPEFERRASTAAKDVGEFEL 60
           M+  I T+  R RV       E N      +  VA    +  EF+RRA+ AA  +G   +
Sbjct: 1   MLKTIWTMLPRKRVTTTAEAPENN-----HVRHVAAAFHNREEFQRRAAAAALVLGSNTI 55

Query: 61  AGMEAQIHLEFIPPKHLEEKFPGLGQWLTARQVAIFEILFFVGSPALPFLKKVAFGPYDW 120
             +   +  E  PP  L  +F GLG WLTARQ AIFE+ +  G+PA+P L  V  G YDW
Sbjct: 56  DTLVGLLRSEHTPPDALAPQFAGLGAWLTARQFAIFEVFYHFGAPAVPTLLSVIRGDYDW 115

Query: 121 SQGNAIEILCRIAAQDANHQEIISSLSMAAPTIRYEALMYALEPLKARASRDDAIQQVIN 180
           +QGNAIEILCR+ A+ A        L    P++R EAL YA  PL     +D  +  V+ 
Sbjct: 116 TQGNAIEILCRLYAKGAAPASAFELLKETIPSMREEALTYAAGPLHMLRQQDTTLSDVLE 175

Query: 181 QLITQPEFGEAYH 193
           +L+  P+F +AY 
Sbjct: 176 ELLEIPQFSDAYQ 188


>ref|YP_003944962.1| hypothetical protein PPSC2_c0738 [Paenibacillus polymyxa SC2]
 gb|ADO54721.1| hypothetical protein PPSC2_c0738 [Paenibacillus polymyxa SC2]
 emb|CCC83623.1| putative transcriptional regulator [Paenibacillus polymyxa M1]
          Length = 304

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/122 (37%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 40  DAPE-FERRASTAAKDVGEFELAGMEAQIH-LEFIPPKHLEEKFPGLGQWLTARQVAIFE 97
           D PE F   A  +A  +GE  L          E   P+ L  K+ GLG WL  +Q AIFE
Sbjct: 35  DQPEQFTAEAKNSAAMLGEEALPLFPRYFFGTELQKPESLAGKYEGLGDWLHIQQDAIFE 94

Query: 98  ILFFVGSPALPFLKKVAFGPYDWSQGNAIEILCRIAAQDANHQEIISSLSMAAPTIRYEA 157
           I++     A+P L +VAFG YDW+Q  A+ IL R+A +  +  +I+  +       RYEA
Sbjct: 95  IIYNYREKAIPMLYEVAFGVYDWTQYKAVRILTRLAREGLHTDQIVDDIISHVDDFRYEA 154

Query: 158 LM 159
            M
Sbjct: 155 QM 156


>ref|XP_002539994.1| conserved hypothetical protein [Ricinus communis]
 gb|EEF22390.1| conserved hypothetical protein [Ricinus communis]
          Length = 144

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 13/144 (9%)

Query: 65  AQIHLEFIP-PKHLEEKFPGLGQWLTARQVAIFEILFFVGSPALPFLKKVAFGPYDWSQG 123
           +++H    P P+  E    GLG WLTA Q A               L+++A+G YDW+QG
Sbjct: 4   SRLHTPSCPTPETFESGVRGLGAWLTAWQFAS------------RVLRRIAWGEYDWTQG 51

Query: 124 NAIEILCRIAAQDANHQEIISSLSMAAPTIRYEALMYALEPLKARASRDDAIQQVINQLI 183
           NA+EIL R+AA+      + +        +  EA  YA+ PL  RA  +  +  ++++L 
Sbjct: 52  NALEILVRLAAEGIGRDVMTADFHQNFEHVADEAKRYAIGPLLHRAKFELRVAAIVSELN 111

Query: 184 TQPEFGEAYHELPALGSFRPEAGP 207
           +   + E  +EL      R    P
Sbjct: 112 SVAGWCEVVYELKGRNRVRARVPP 135


>ref|XP_002539366.1| conserved hypothetical protein [Ricinus communis]
 gb|EEF23017.1| conserved hypothetical protein [Ricinus communis]
          Length = 205

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 51/98 (52%)

Query: 110 LKKVAFGPYDWSQGNAIEILCRIAAQDANHQEIISSLSMAAPTIRYEALMYALEPLKARA 169
           L+++A+G YDW+QGNA+EIL R+AA+      + +        +  EA  YA+ PL  RA
Sbjct: 99  LRRIAWGEYDWTQGNALEILVRLAAEGIGRDVMTADFHQNFEHVADEAKRYAIGPLLHRA 158

Query: 170 SRDDAIQQVINQLITQPEFGEAYHELPALGSFRPEAGP 207
             +  +  ++++L +   + E  +EL      R    P
Sbjct: 159 KFELRVAAIVSELNSVAGWCEVVYELKGRNRVRARVPP 196