BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2566.p         (128 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002542797.1| hypothetical protein Arad_4982 [Agrobacteriu...    62   3e-08
ref|ZP_07329687.1| hypothetical protein AceceDRAFT_5037 [Acetivi...    57   1e-06

>ref|YP_002542797.1| hypothetical protein Arad_4982 [Agrobacterium radiobacter K84]
 gb|ACM28539.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 125

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 5/116 (4%)

Query: 1   MKIRNSIAEDRYRQSLIEGRRYFLESENGRKVLKRIEEIYGKVESIYVLSHVPEQGGEDS 60
           M++  S  E +YR  LI            R++L  I   +  +ES +VL  VPEQ GED 
Sbjct: 1   MRLIGSDIEAKYRSELIHSSHLLFSGRGNRRLLASINRAFSDMESAFVLDWVPEQ-GEDI 59

Query: 61  YSVLVDGDKVISCDLQCDGAELS-VCNIERRSVKEYEHGLKGKMQRIQLLVAFDLL 115
           ++VLV+ +KV   +L     EL+  C++  R+V+ Y  GL+ K + I+L VA DLL
Sbjct: 60  FTVLVNDNKVAVFELARSSNELADACDV--RTVEAYRRGLR-KHRAIKLAVALDLL 112


>ref|ZP_07329687.1| hypothetical protein AceceDRAFT_5037 [Acetivibrio cellulolyticus
           CD2]
 gb|EFL59017.1| hypothetical protein AceceDRAFT_5037 [Acetivibrio cellulolyticus
           CD2]
          Length = 124

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 69/118 (58%), Gaps = 5/118 (4%)

Query: 1   MKIRNSIAEDRYRQSLIEGRRYFLESENGRKVLKRIEEIYGKVESIYVLSHVPEQGGEDS 60
           M++  S+ ED  R+ +I+            K+LK + E++  +++ Y L H  EQ  ED 
Sbjct: 1   MRLIGSLREDEIRKQMIKAHNDLFYERKNEKLLKILTELFPDIKTAYFLGHTIEQC-EDI 59

Query: 61  YSVLVDGDKVISCDLQCDGAELSVCNI-ERRSVKEYEHGLKGKMQRIQLLVAFDLLKK 117
           Y++LV+ + ++S  ++ D   +SV  I E  SV++Y +G+ GK + I+ LVA DL+KK
Sbjct: 60  YTLLVNDNIIVS--IEIDKYNISVDPIVEIESVEDYLNGI-GKQRHIEFLVAMDLVKK 114