BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2565.p         (82 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776975.1| hypothetical protein Hsero_3589 [Herbaspiril...    79   2e-13
ref|XP_002537507.1| conserved hypothetical protein [Ricinus comm...    65   3e-09
ref|YP_001100373.1| transposase (partial) [Herminiimonas arsenic...    60   7e-08
ref|YP_001098982.1| transposase (partial) [Herminiimonas arsenic...    60   9e-08
ref|YP_004754358.1| transposase [Collimonas fungivorans Ter331] ...    58   4e-07

>ref|YP_003776975.1| hypothetical protein Hsero_3589 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65067.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 201

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/51 (74%), Positives = 45/51 (88%)

Query: 1   MFLDLRELGYEGSYDRVAAFGRQWKVGQMERVNSASKSTVFHLSNAVLNAK 51
           MFLDL+ELGY+GSYDRVAAFGR+WKVGQMERVNSASKST++   + + N K
Sbjct: 85  MFLDLKELGYKGSYDRVAAFGRRWKVGQMERVNSASKSTIWDAVDDIRNGK 135


>ref|XP_002537507.1| conserved hypothetical protein [Ricinus communis]
 gb|EEF24876.1| conserved hypothetical protein [Ricinus communis]
          Length = 228

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/39 (82%), Positives = 34/39 (87%)

Query: 1   MFLDLRELGYEGSYDRVAAFGRQWKVGQMERVNSASKST 39
           + LDL+ELGYEGSYDRVAAF RQWKVGQ E VNSASK T
Sbjct: 88  LHLDLKELGYEGSYDRVAAFARQWKVGQSEWVNSASKRT 126


>ref|YP_001100373.1| transposase (partial) [Herminiimonas arsenicoxydans]
          Length = 122

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/39 (79%), Positives = 34/39 (87%)

Query: 1   MFLDLRELGYEGSYDRVAAFGRQWKVGQMERVNSASKST 39
           M +DL  LG+EGSYDRVAAF RQWKV Q+ERVNSASKST
Sbjct: 82  MHIDLCALGFEGSYDRVAAFARQWKVDQLERVNSASKST 120


>ref|YP_001098982.1| transposase (partial) [Herminiimonas arsenicoxydans]
 emb|CAL60855.1| transposase IS21 family (partial) [Herminiimonas arsenicoxydans]
          Length = 40

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/39 (82%), Positives = 33/39 (84%)

Query: 1  MFLDLRELGYEGSYDRVAAFGRQWKVGQMERVNSASKST 39
          M LDLRELGYE SYDRV AF RQWKV Q+ERVNSASK T
Sbjct: 1  MHLDLRELGYERSYDRVTAFARQWKVDQLERVNSASKLT 39


>ref|YP_004754358.1| transposase [Collimonas fungivorans Ter331]
 gb|AEK63535.1| transposase [Collimonas fungivorans Ter331]
          Length = 144

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/37 (72%), Positives = 32/37 (86%)

Query: 4   DLRELGYEGSYDRVAAFGRQWKVGQMERVNSASKSTV 40
           DL  LG+EGSYDRVAAF RQW++ Q++RVNSASK TV
Sbjct: 88  DLCALGFEGSYDRVAAFARQWRLDQLDRVNSASKGTV 124