BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2564.p (850 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774296.1| RNA polymerase sigma-70 factor transcription... 1248 0.0 ref|YP_004751680.1| RNA polymerase sigma factor [Collimonas fung... 1120 0.0 ref|YP_001098788.1| putative sigma 70 factor of RNA polymerase [... 1098 0.0 emb|CAL60659.2| putative RNA polymerase sigma factor rpoD (Sigma... 1088 0.0 ref|YP_001352183.1| RNA polymerase primary sigma factor [Janthin... 1075 0.0 >ref|YP_003774296.1| RNA polymerase sigma-70 factor transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62388.1| RNA polymerase sigma-70 factor transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 850 Score = 1248 bits (3228), Expect = 0.0, Method: Composition-based stats. Identities = 830/850 (97%), Positives = 840/850 (98%) Query: 1 MANAMKKPAKTPAASAKSSKTAAAVKSTAAAKTTQAVAAKSPVKGTAKAAVTVKPTAKTA 60 MANAMKKPAKTPAAS KSSKT A K TAAA+ T+AVAAKSPVKGTAKAA TVK TAKTA Sbjct: 1 MANAMKKPAKTPAASTKSSKTVTAAKPTAAARPTKAVAAKSPVKGTAKAADTVKTTAKTA 60 Query: 61 AAATPKKTAAQTTAAKPARAASPKATATPANKLPQAAEQAVSVKATKTSVTTKKPETKTA 120 AAATPKKTA +TTAAKPARAA+PKATATPANKLPQAAEQAVSVKATKTSVTTKKPETKTA Sbjct: 61 AAATPKKTAVKTTAAKPARAAAPKATATPANKLPQAAEQAVSVKATKTSVTTKKPETKTA 120 Query: 121 KTTKAAQVEGKDVSATAASSVSQTTDAAALAAIDTSGYVLPSVKVPGRRGRKPKEFQPES 180 KTTKAA+VEGKDVSATAASSVSQTTDAAALAAIDTSGYVLPSVKVPGRRGRKPKEFQPES Sbjct: 121 KTTKAAKVEGKDVSATAASSVSQTTDAAALAAIDTSGYVLPSVKVPGRRGRKPKEFQPES 180 Query: 181 DEVAALNTIERTELKAADKAKAKDRKAKEKALLKDAFSSDTEASEEELERRRQKLKTLIK 240 DEVAALNTIERTELKAADKAKAKDRKAKEKALLKDAFSSDTEASEEELERRRQKLKTLIK Sbjct: 181 DEVAALNTIERTELKAADKAKAKDRKAKEKALLKDAFSSDTEASEEELERRRQKLKTLIK 240 Query: 241 LGKERGFLTFSEINDHLPENIVDPEAIEGIIGTFSDMGISVYEHAPDAETLLLSDNVANV 300 LGKERGFLTFSEINDHLPENIVDPEAIEGIIGTFSDMGISVYEHAPDAETLLLSDNVANV Sbjct: 241 LGKERGFLTFSEINDHLPENIVDPEAIEGIIGTFSDMGISVYEHAPDAETLLLSDNVANV 300 Query: 301 ASDDDAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKDM 360 ASDDDAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKDM Sbjct: 301 ASDDDAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKDM 360 Query: 361 IQAISACPTTIAEILAAADRISKDEIKVDEIVDGLVDPNESEQQVEAAASDSDEDDEEEE 420 IQAISACPTTIAEILAAA+RISKDEIKVDEIVDGLVDPNESEQQVEAA+SDSDEDDE+EE Sbjct: 361 IQAISACPTTIAEILAAAERISKDEIKVDEIVDGLVDPNESEQQVEAASSDSDEDDEDEE 420 Query: 421 EEEEDEEEEENESSGSGAAGFSAEQLEQLKRDALGKFAVIGTQFENMRKAFEKEGYNSKP 480 EEEEDEEEEE+ES+GSGAAGFSAEQLEQLKRDALGKFAVIGTQFENMRKAFEKEGYNSKP Sbjct: 421 EEEEDEEEEESESTGSGAAGFSAEQLEQLKRDALGKFAVIGTQFENMRKAFEKEGYNSKP 480 Query: 481 YVKAQEIISNELLGIRFTAKIVEKLCDTLRAQVDEVRTVERQILDVAVNKCNMPRAHFIK 540 YVKAQEIISNELLGIRFTAKIVEKLCDTLRAQVDEVRTVERQILDVAVNKCNMPRAHFIK Sbjct: 481 YVKAQEIISNELLGIRFTAKIVEKLCDTLRAQVDEVRTVERQILDVAVNKCNMPRAHFIK 540 Query: 541 VFPGNEVNLDWVDGEVAANHDYSAVLSRNVPAIKELQQKLIDLQARVVLPLPDLRAINKK 600 VFPGNEVNLDWVDGEVAANHDYSAVLSRNVPAIKELQQKLIDLQARVVLPL DLRAINKK Sbjct: 541 VFPGNEVNLDWVDGEVAANHDYSAVLSRNVPAIKELQQKLIDLQARVVLPLQDLRAINKK 600 Query: 601 MGAGEKKARMAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRG 660 MGAGEKKARMAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRG Sbjct: 601 MGAGEKKARMAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRG 660 Query: 661 YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPDPATLA 720 YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPDPATLA Sbjct: 661 YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPDPATLA 720 Query: 721 IKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPADAALHASMRNVV 780 IKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPADAALHASMRNVV Sbjct: 721 IKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPADAALHASMRNVV 780 Query: 781 KDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS 840 KDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS Sbjct: 781 KDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS 840 Query: 841 DKLKSFLEGN 850 DKLKSFLEGN Sbjct: 841 DKLKSFLEGN 850 >ref|YP_004751680.1| RNA polymerase sigma factor [Collimonas fungivorans Ter331] gb|AEK60857.1| RNA polymerase sigma factor [Collimonas fungivorans Ter331] Length = 831 Score = 1120 bits (2897), Expect = 0.0, Method: Composition-based stats. Identities = 693/859 (80%), Positives = 735/859 (85%), Gaps = 42/859 (4%) Query: 1 MANAMKKPAKTPAASAKSSKTAAA-----VKSTAAAKTTQAVAAKSPVKGTAKAAVTVKP 55 MANAMK+PAK+ S K A A S+ + A ++K+P K +K Sbjct: 6 MANAMKRPAKSLTLSVKKPAAAKANVSTSSSSSKSPVKKTAASSKAPAKPVSK------- 58 Query: 56 TAKTAAAATPKKTAAQTTAAKPARAASPKATATPANKLPQAAEQAVSVKATKTSVTTKKP 115 K + AT T A T AKP VSVK +K VT KKP Sbjct: 59 --KVVSKATATTTKASRTVAKP-----------------------VSVK-SKAPVTIKKP 92 Query: 116 ETKTAKTTKAAQVE--GKDVSATAASSVSQTTDAAALAAIDTSGYVLPSVKVPGRRGRKP 173 + K K++K A DVS S VSQTTDAA LAAIDTSGY+LPSVKVPGRRGRKP Sbjct: 93 QLKVVKSSKNAAPAPVKADVSVMIGSGVSQTTDAATLAAIDTSGYILPSVKVPGRRGRKP 152 Query: 174 KEFQPESDEVAALNTIERTELKAADKAKAKDRKAKEKALLKDAFSSDTEASEEELERRRQ 233 KEFQPE+DEVAALN +ER ELKA DKAKAKDRKAKEKALLKDAFSSDTEASEEELE RRQ Sbjct: 153 KEFQPENDEVAALNAVERAELKAVDKAKAKDRKAKEKALLKDAFSSDTEASEEELEARRQ 212 Query: 234 KLKTLIKLGKERGFLTFSEINDHLPENIVDPEAIEGIIGTFSDMGISVYEHAPDAETLLL 293 KLKTLIK+GKERGFLTFSEINDHLPENI+DPEAIEGIIGTFSDMGI+VYE APDAETLLL Sbjct: 213 KLKTLIKMGKERGFLTFSEINDHLPENIIDPEAIEGIIGTFSDMGIAVYEQAPDAETLLL 272 Query: 294 SDNVANVASDDDAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRI 353 SDNVA VASDDDAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRI Sbjct: 273 SDNVATVASDDDAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRI 332 Query: 354 EDGLKDMIQAISACPTTIAEILAAADRISKDEIKVDEIVDGLVDPNESEQQVEAAASDSD 413 EDGLKDMIQAISACPTTIAEIL AAD+I KDEIK+DEIVDGLVDPN++++ A+A+ + Sbjct: 333 EDGLKDMIQAISACPTTIAEILLAADKIGKDEIKIDEIVDGLVDPNQTDEAATASAAATA 392 Query: 414 EDDEEEEEEEEDEEEEENESSG--SGAAGFSAEQLEQLKRDALGKFAVIGTQFENMRKAF 471 D++ ++EEEE+EE+ E + + SGAAGFSAEQLEQLKRDALGKF I TQF+ MRKAF Sbjct: 393 ADEDSDDEEEEEEEDAEEDDASSTSGAAGFSAEQLEQLKRDALGKFETISTQFDKMRKAF 452 Query: 472 EKEGYNSKPYVKAQEIISNELLGIRFTAKIVEKLCDTLRAQVDEVRTVERQILDVAVNKC 531 EKEGYNSKPYVKAQEIISNELLGIRFTAK+VEKLCDTLR QVDEVR +ERQILDVAVNKC Sbjct: 453 EKEGYNSKPYVKAQEIISNELLGIRFTAKVVEKLCDTLRGQVDEVRQIERQILDVAVNKC 512 Query: 532 NMPRAHFIKVFPGNEVNLDWVDGEVAANHDYSAVLSRNVPAIKELQQKLIDLQARVVLPL 591 MPR HFIKVFPGNE NLDWVDGEV+ NH YS VLSRNVPA+KELQQ+LIDLQARVVLPL Sbjct: 513 GMPRPHFIKVFPGNETNLDWVDGEVSGNHAYSTVLSRNVPAVKELQQRLIDLQARVVLPL 572 Query: 592 PDLRAINKKMGAGEKKARMAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA 651 PDLR INKKMGAGEKKARMAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA Sbjct: 573 PDLRGINKKMGAGEKKARMAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA 632 Query: 652 VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETG 711 VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETG Sbjct: 633 VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETG 692 Query: 712 AEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPADAA 771 AEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPADAA Sbjct: 693 AEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPADAA 752 Query: 772 LHASMRNVVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKAL 831 LHASMR VVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKAL Sbjct: 753 LHASMRGVVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKAL 812 Query: 832 RKLRHPSRSDKLKSFLEGN 850 RKLRHPSRSDKLKSFLEGN Sbjct: 813 RKLRHPSRSDKLKSFLEGN 831 >ref|YP_001098788.1| putative sigma 70 factor of RNA polymerase [Herminiimonas arsenicoxydans] Length = 858 Score = 1098 bits (2840), Expect = 0.0, Method: Composition-based stats. Identities = 686/858 (79%), Positives = 738/858 (86%), Gaps = 33/858 (3%) Query: 1 MANAMKKPAKTPAASAKSSKTAAAVKSTAAAKTTQAVAAKSPVKGTAKAAVTVKPTAKTA 60 MANAMKKPAK + AA+ TAAAK+T+ VA K + KA + A + Sbjct: 26 MANAMKKPAK-------NQILAASKAETAAAKSTKPVAKKVASQSAGKAVSSSNVKAVKS 78 Query: 61 AAATPKKTA---AQTTAAKPARAASPKATATPANKLPQAAEQAVSVKATKTSVTTKKPET 117 P KTA A++ AAKP S K A P VSV+ +K VT KK E Sbjct: 79 PTKAPTKTATLVAKSAAAKP----SSKVAAKP-----------VSVQ-SKAPVTNKKSEV 122 Query: 118 KTAKTTKAAQVEGK-----DVSATAASSVSQTTDAAALAAIDTSGYVLPSVKVPGRRGRK 172 K+ T+K+A+VE K V+ +VSQTTDAA LAAIDTSGY+LPS+KVPGRRGRK Sbjct: 123 KS--TSKSAKVEPKVESRPGVNVMITPTVSQTTDAATLAAIDTSGYILPSIKVPGRRGRK 180 Query: 173 PKEFQPESDEVAALNTIERTELKAADKAKAKDRKAKEKALLKDAFSSDTEASEEELERRR 232 PKEFQPE+DEVAALN +ER ELKA DKAKAKDRKAKEKALLKDAFS+DTEASEEELE RR Sbjct: 181 PKEFQPENDEVAALNAVERAELKAVDKAKAKDRKAKEKALLKDAFSNDTEASEEELEARR 240 Query: 233 QKLKTLIKLGKERGFLTFSEINDHLPENIVDPEAIEGIIGTFSDMGISVYEHAPDAETLL 292 QKLKTLIK GKERGFLT++EINDHLPENI+DPEAIEGIIGTF+DMGI+VYE APDAETLL Sbjct: 241 QKLKTLIKFGKERGFLTYAEINDHLPENIIDPEAIEGIIGTFNDMGIAVYEQAPDAETLL 300 Query: 293 LSDNVANVASDDDAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKR 352 LSDNVA VASDD+AEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEI+IAKR Sbjct: 301 LSDNVATVASDDEAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIDIAKR 360 Query: 353 IEDGLKDMIQAISACPTTIAEILAAADRISKDEIKVDEIVDGLVDPNESEQQVEAAASDS 412 IEDGL+DMIQAISACPTTIAEI+AAA+RISKDE K+DEIVDGLVD N SE + A + Sbjct: 361 IEDGLRDMIQAISACPTTIAEIMAAAERISKDEAKIDEIVDGLVDMNASEPVIAPPAPAA 420 Query: 413 DEDDEEEEEEEEDEEEEENESSGSGAAGFSAEQLEQLKRDALGKFAVIGTQFENMRKAFE 472 D+EEEEEEEE+ EEEE + SGAAGFS+EQLEQLKRD+L KF+ I QF+ MRKAFE Sbjct: 421 ASDEEEEEEEEEEAEEEEETPAASGAAGFSSEQLEQLKRDSLAKFSTIAMQFDKMRKAFE 480 Query: 473 KEGYNSKPYVKAQEIISNELLGIRFTAKIVEKLCDTLRAQVDEVRTVERQILDVAVNKCN 532 KEGYNSKPYVKAQEIISNELLGIRFTAK+VEKLCDTLR QVDEVR +E+QILD+AVN+C Sbjct: 481 KEGYNSKPYVKAQEIISNELLGIRFTAKVVEKLCDTLRGQVDEVRQIEKQILDIAVNRCE 540 Query: 533 MPRAHFIKVFPGNEVNLDWVDGEVAANHDYSAVLSRNVPAIKELQQKLIDLQARVVLPLP 592 MPR HFIKVFPGNE NLDWVDGEV NH YS VL+RNVPA+KELQQKLIDLQARVVLPLP Sbjct: 541 MPRNHFIKVFPGNETNLDWVDGEVEGNHPYSIVLARNVPAVKELQQKLIDLQARVVLPLP 600 Query: 593 DLRAINKKMGAGEKKARMAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV 652 DLRAIN+KM AGE KAR AKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV Sbjct: 601 DLRAINRKMAAGEMKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV 660 Query: 653 DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGA 712 DKFEYRRG+KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGA Sbjct: 661 DKFEYRRGFKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGA 720 Query: 713 EPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPADAAL 772 EPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPADAAL Sbjct: 721 EPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPADAAL 780 Query: 773 HASMRNVVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALR 832 HASMR VVKD+LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALR Sbjct: 781 HASMRGVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALR 840 Query: 833 KLRHPSRSDKLKSFLEGN 850 KLRHPSRSDKLKSFLEGN Sbjct: 841 KLRHPSRSDKLKSFLEGN 858 >emb|CAL60659.2| putative RNA polymerase sigma factor rpoD (Sigma-70) [Herminiimonas arsenicoxydans] Length = 800 Score = 1088 bits (2814), Expect = 0.0, Method: Composition-based stats. Identities = 656/795 (82%), Positives = 708/795 (89%), Gaps = 8/795 (1%) Query: 61 AAATPKKTAAQTTAAKPARAASPKATATPANKLPQAAEQAVSVKATKTSVTTKKPETKTA 120 A ++ A ++ P + A+ A + A + A + VSV+ +K VT KK E K+ Sbjct: 9 AVSSSNVKAVKSPTKAPTKTATLVAKSAAAKPSSKVAAKPVSVQ-SKAPVTNKKSEVKS- 66 Query: 121 KTTKAAQVEGK-----DVSATAASSVSQTTDAAALAAIDTSGYVLPSVKVPGRRGRKPKE 175 T+K+A+VE K V+ +VSQTTDAA LAAIDTSGY+LPS+KVPGRRGRKPKE Sbjct: 67 -TSKSAKVEPKVESRPGVNVMITPTVSQTTDAATLAAIDTSGYILPSIKVPGRRGRKPKE 125 Query: 176 FQPESDEVAALNTIERTELKAADKAKAKDRKAKEKALLKDAFSSDTEASEEELERRRQKL 235 FQPE+DEVAALN +ER ELKA DKAKAKDRKAKEKALLKDAFS+DTEASEEELE RRQKL Sbjct: 126 FQPENDEVAALNAVERAELKAVDKAKAKDRKAKEKALLKDAFSNDTEASEEELEARRQKL 185 Query: 236 KTLIKLGKERGFLTFSEINDHLPENIVDPEAIEGIIGTFSDMGISVYEHAPDAETLLLSD 295 KTLIK GKERGFLT++EINDHLPENI+DPEAIEGIIGTF+DMGI+VYE APDAETLLLSD Sbjct: 186 KTLIKFGKERGFLTYAEINDHLPENIIDPEAIEGIIGTFNDMGIAVYEQAPDAETLLLSD 245 Query: 296 NVANVASDDDAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIED 355 NVA VASDD+AEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEI+IAKRIED Sbjct: 246 NVATVASDDEAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIDIAKRIED 305 Query: 356 GLKDMIQAISACPTTIAEILAAADRISKDEIKVDEIVDGLVDPNESEQQVEAAASDSDED 415 GL+DMIQAISACPTTIAEI+AAA+RISKDE K+DEIVDGLVD N SE + A + D Sbjct: 306 GLRDMIQAISACPTTIAEIMAAAERISKDEAKIDEIVDGLVDMNASEPVIAPPAPAAASD 365 Query: 416 DEEEEEEEEDEEEEENESSGSGAAGFSAEQLEQLKRDALGKFAVIGTQFENMRKAFEKEG 475 +EEEEEEEE+ EEEE + SGAAGFS+EQLEQLKRD+L KF+ I QF+ MRKAFEKEG Sbjct: 366 EEEEEEEEEEAEEEEETPAASGAAGFSSEQLEQLKRDSLAKFSTIAMQFDKMRKAFEKEG 425 Query: 476 YNSKPYVKAQEIISNELLGIRFTAKIVEKLCDTLRAQVDEVRTVERQILDVAVNKCNMPR 535 YNSKPYVKAQEIISNELLGIRFTAK+VEKLCDTLR QVDEVR +E+QILD+AVN+C MPR Sbjct: 426 YNSKPYVKAQEIISNELLGIRFTAKVVEKLCDTLRGQVDEVRQIEKQILDIAVNRCEMPR 485 Query: 536 AHFIKVFPGNEVNLDWVDGEVAANHDYSAVLSRNVPAIKELQQKLIDLQARVVLPLPDLR 595 HFIKVFPGNE NLDWVDGEV NH YS VL+RNVPA+KELQQKLIDLQARVVLPLPDLR Sbjct: 486 NHFIKVFPGNETNLDWVDGEVEGNHPYSIVLARNVPAVKELQQKLIDLQARVVLPLPDLR 545 Query: 596 AINKKMGAGEKKARMAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF 655 AIN+KM AGE KAR AKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF Sbjct: 546 AINRKMAAGEMKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF 605 Query: 656 EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPD 715 EYRRG+KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPD Sbjct: 606 EYRRGFKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPD 665 Query: 716 PATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPADAALHAS 775 PATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPADAALHAS Sbjct: 666 PATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPADAALHAS 725 Query: 776 MRNVVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 835 MR VVKD+LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLR Sbjct: 726 MRGVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 785 Query: 836 HPSRSDKLKSFLEGN 850 HPSRSDKLKSFLEGN Sbjct: 786 HPSRSDKLKSFLEGN 800 >ref|YP_001352183.1| RNA polymerase primary sigma factor [Janthinobacterium sp. Marseille] gb|ABR89248.1| RNA polymerase primary sigma factor [Janthinobacterium sp. Marseille] Length = 826 Score = 1075 bits (2781), Expect = 0.0, Method: Composition-based stats. Identities = 659/800 (82%), Positives = 710/800 (88%), Gaps = 18/800 (2%) Query: 66 KKTAAQTTAAKPARAASPKATATPANKL---------PQAAEQAVSVKATKTSVTTKKPE 116 K AA++ A AA K T++P+ P+ A + VSV+ +K VT KK E Sbjct: 30 KVVAAKSAGQAKAVAAKTKVTSSPSKAAAKTPAAKLSPKVAAKPVSVQ-SKAPVTNKKSE 88 Query: 117 TKTAKTTKAAQVEGK-----DVSATAASSVSQTTDAAALAAIDTSGYVLPSVKVPGRRGR 171 K A +K+A+VE K V+ ++VSQTTDAA LAAIDTSGY+LPS+KVPGRRGR Sbjct: 89 VKPA--SKSAKVEPKVESRPGVNVMITATVSQTTDAATLAAIDTSGYILPSIKVPGRRGR 146 Query: 172 KPKEFQPESDEVAALNTIERTELKAADKAKAKDRKAKEKALLKDAFSSDTEASEEELERR 231 KPKEFQPE+DE+AALN +ER ELKA DKAKAKDRKAKEKALLKDAFSSDTEASEEELE R Sbjct: 147 KPKEFQPENDEIAALNAVERAELKAVDKAKAKDRKAKEKALLKDAFSSDTEASEEELEAR 206 Query: 232 RQKLKTLIKLGKERGFLTFSEINDHLPENIVDPEAIEGIIGTFSDMGISVYEHAPDAETL 291 RQKLKTLIK GKERGFLT++EINDHLPENI+DPEAIEGIIGTF+DMGI+VYE APDAETL Sbjct: 207 RQKLKTLIKFGKERGFLTYAEINDHLPENIIDPEAIEGIIGTFNDMGIAVYEQAPDAETL 266 Query: 292 LLSDNVANVASDDDAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAK 351 LLSDNVA VASDD+AEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEI+IAK Sbjct: 267 LLSDNVATVASDDEAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIDIAK 326 Query: 352 RIEDGLKDMIQAISACPTTIAEILAAADRISKDEIKVDEIVDGLVDPNESEQQVEAAASD 411 RIEDGL+DMIQAISACPTTIAEI+AAA+RISKDE K+DEIVDGLVD + +E V A Sbjct: 327 RIEDGLRDMIQAISACPTTIAEIIAAAERISKDEAKIDEIVDGLVDMDAAEPVVAPPAPA 386 Query: 412 -SDEDDEEEEEEEEDEEEEENESSGSGAAGFSAEQLEQLKRDALGKFAVIGTQFENMRKA 470 S +D+E+EEEEEE+EEEEE ++ SGAAGFS+EQLEQLKRD+L KF+ I QF+ MRKA Sbjct: 387 ASSDDEEDEEEEEEEEEEEEETTAASGAAGFSSEQLEQLKRDSLAKFSTIAQQFDKMRKA 446 Query: 471 FEKEGYNSKPYVKAQEIISNELLGIRFTAKIVEKLCDTLRAQVDEVRTVERQILDVAVNK 530 FEKEGYNSKPYVKAQEIISNELL IRFTAK+VEKLCDTLR QVDEVR +E+QILDVAVN+ Sbjct: 447 FEKEGYNSKPYVKAQEIISNELLSIRFTAKVVEKLCDTLRGQVDEVRHIEKQILDVAVNR 506 Query: 531 CNMPRAHFIKVFPGNEVNLDWVDGEVAANHDYSAVLSRNVPAIKELQQKLIDLQARVVLP 590 C MPR HFIKVFPGNE NLDWVDGEV H YS VL+RNVP +KELQQKLIDLQARVVLP Sbjct: 507 CGMPRGHFIKVFPGNETNLDWVDGEVNGKHAYSVVLARNVPTVKELQQKLIDLQARVVLP 566 Query: 591 LPDLRAINKKMGAGEKKARMAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK 650 LPDLRAINKKM AGE KAR AKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK Sbjct: 567 LPDLRAINKKMAAGEMKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK 626 Query: 651 AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQET 710 AVDKFEYRRG+KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQET Sbjct: 627 AVDKFEYRRGFKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQET 686 Query: 711 GAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPADA 770 GAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPADA Sbjct: 687 GAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPADA 746 Query: 771 ALHASMRNVVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKA 830 ALHASMR VVKD+LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKA Sbjct: 747 ALHASMRGVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKA 806 Query: 831 LRKLRHPSRSDKLKSFLEGN 850 LRKLRHPSRSDKLKSFLEGN Sbjct: 807 LRKLRHPSRSDKLKSFLEGN 826