BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2561.p (565 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774294.1| DNA primase [Herbaspirillum seropedicae SmR1... 1041 0.0 ref|YP_004751681.1| DNA primase [Collimonas fungivorans Ter331] ... 822 0.0 ref|YP_001352182.1| DNA primase [Janthinobacterium sp. Marseille... 805 0.0 ref|YP_001098787.1| DNA primase [Herminiimonas arsenicoxydans] >... 796 0.0 ref|ZP_08274383.1| DNA primase [Oxalobacteraceae bacterium IMCC9... 785 0.0 >ref|YP_003774294.1| DNA primase [Herbaspirillum seropedicae SmR1] gb|ADJ62386.1| DNA primase protein [Herbaspirillum seropedicae SmR1] Length = 598 Score = 1041 bits (2693), Expect = 0.0, Method: Composition-based stats. Identities = 541/565 (95%), Positives = 554/565 (98%) Query: 1 MGLCPFHNEKSPSFTVSPTKQFYHCFGCGAHGTAISFLIEYSGMGFVEAVKDLAQNVGMV 60 MGLCPFHNEKSPSFTVSPTKQFYHCFGCGAHGTAISFLIEYSGMGFVEAVKDLAQNVGMV Sbjct: 34 MGLCPFHNEKSPSFTVSPTKQFYHCFGCGAHGTAISFLIEYSGMGFVEAVKDLAQNVGMV 93 Query: 61 VPEREDNIPLAQRQEKQAKSMALSDVMTRANDFYRHQLRSAQPAIAYLKGRGLTGEVAAR 120 VPERED+IPLAQRQEKQAKSMALSDVMTRANDFYRHQLRSAQPAIAYLKGRGLTGE+AAR Sbjct: 94 VPEREDSIPLAQRQEKQAKSMALSDVMTRANDFYRHQLRSAQPAIAYLKGRGLTGEIAAR 153 Query: 121 FGLGYSPDEWDSLRQVFPDYENEVLVESGLVIDKSEEGGGHRKRYDRFRGRIMFPIRNTK 180 FGLGYSPDEWDSLRQVFPDY+NE LVESGLVIDKSEEGG HRKRYDRFRGRIMFPIRNTK Sbjct: 154 FGLGYSPDEWDSLRQVFPDYDNEALVESGLVIDKSEEGGAHRKRYDRFRGRIMFPIRNTK 213 Query: 181 GQVIGFGGRVMDGGEPKYLNSPETPLFQKGSELYGLFEARQAIREAGYVLVTEGYMDVVA 240 GQVIGFGGRVMDGGEPKYLNSPETPLFQKGSELYGLFEARQAIREAGY LVTEGYMDVVA Sbjct: 214 GQVIGFGGRVMDGGEPKYLNSPETPLFQKGSELYGLFEARQAIREAGYALVTEGYMDVVA 273 Query: 241 LAQLGFPQAVATLGTACTPIHVQKLVRQTDEVIFSFDGDNAGRRAARRALEACLPHASDN 300 LAQLGFPQAVATLGTACTPIHVQKLVRQTD+VIFSFDGDNAGRRAARRALEACLPHASDN Sbjct: 274 LAQLGFPQAVATLGTACTPIHVQKLVRQTDQVIFSFDGDNAGRRAARRALEACLPHASDN 333 Query: 301 KTIKFLFLPKEHDPDSYVREMGAPAFEEQIREAMPLSQFLLKEIIGENDLRTPEGRAHAQ 360 KTIKFLFLPKEHDPDSYVREMGAPAFEEQIREA+PLSQFLL+EIIGENDLRTPEGRAHAQ Sbjct: 334 KTIKFLFLPKEHDPDSYVREMGAPAFEEQIREALPLSQFLLREIIGENDLRTPEGRAHAQ 393 Query: 361 FAAKPLLQALPASGLRLQIVRSVAQATQTTPAELEVLFELEKPVARVRSAPPRTKRTAPV 420 FAAKPLLQALPAS LRLQIVRSVAQATQ+TPAELEVLFELEKPVARVR+AP R+KRTAPV Sbjct: 394 FAAKPLLQALPASALRLQIVRSVAQATQSTPAELEVLFELEKPVARVRAAPARSKRTAPV 453 Query: 421 GLERQIMRLLVAHPQLSADLDAAALEAIARIAPDQAELLAHLVGVAQGMGEQANFAALVE 480 GLERQIMRLLVAHPQL+ADLDA ALEAIARIAPDQAE+L HLVGVAQGMGEQANFAALVE Sbjct: 454 GLERQIMRLLVAHPQLAADLDAGALEAIARIAPDQAEMLTHLVGVAQGMGEQANFAALVE 513 Query: 481 HLREGGPEFDSMIAEIAAESESEFDVVRAEMAGAIRQARIRALDDEMQMLVASNLRTEEE 540 HLREGGPEFDSMIAEIAAESESEFDVVRAEM GAIRQARIRALD+EMQMLV SNLRTEE+ Sbjct: 514 HLREGGPEFDSMIAEIAAESESEFDVVRAEMGGAIRQARIRALDEEMQMLVTSNLRTEED 573 Query: 541 RNRYRELMQRKEWLKRQTGGAVAAG 565 RNRYRELMQRKEWLKRQ G AVAAG Sbjct: 574 RNRYRELMQRKEWLKRQAGAAVAAG 598 >ref|YP_004751681.1| DNA primase [Collimonas fungivorans Ter331] gb|AEK60858.1| DNA primase [Collimonas fungivorans Ter331] Length = 598 Score = 822 bits (2123), Expect = 0.0, Method: Composition-based stats. Identities = 418/557 (75%), Positives = 474/557 (85%) Query: 1 MGLCPFHNEKSPSFTVSPTKQFYHCFGCGAHGTAISFLIEYSGMGFVEAVKDLAQNVGMV 60 MGLCPFHNEKSPSFTVSPTKQFYHCFGCGAHGTAI FLIEYSG+GFVEAVKDLAQ VGM Sbjct: 34 MGLCPFHNEKSPSFTVSPTKQFYHCFGCGAHGTAIGFLIEYSGLGFVEAVKDLAQGVGMT 93 Query: 61 VPEREDNIPLAQRQEKQAKSMALSDVMTRANDFYRHQLRSAQPAIAYLKGRGLTGEVAAR 120 VP+ +D IP AQR E QAKSMALSD M+ A DFYR LRSA A+ YLK RGLTGEVAA+ Sbjct: 94 VPDNDDKIPPAQRAEYQAKSMALSDAMSAACDFYRQHLRSAPNAVDYLKRRGLTGEVAAK 153 Query: 121 FGLGYSPDEWDSLRQVFPDYENEVLVESGLVIDKSEEGGGHRKRYDRFRGRIMFPIRNTK 180 FGLGYSPD WDSLRQVFPDYE LVESGLVID+++E G +RKRYDRFR RIMFPIRNTK Sbjct: 154 FGLGYSPDNWDSLRQVFPDYEATALVESGLVIDRTDEEGNNRKRYDRFRDRIMFPIRNTK 213 Query: 181 GQVIGFGGRVMDGGEPKYLNSPETPLFQKGSELYGLFEARQAIREAGYVLVTEGYMDVVA 240 GQVIGFGGRV+D GEPKYLNSPETPLFQKGSELYGLFEARQAIR+AGYVLVTEGYMDVVA Sbjct: 214 GQVIGFGGRVLDSGEPKYLNSPETPLFQKGSELYGLFEARQAIRDAGYVLVTEGYMDVVA 273 Query: 241 LAQLGFPQAVATLGTACTPIHVQKLVRQTDEVIFSFDGDNAGRRAARRALEACLPHASDN 300 LAQLGFPQAVATLGTACTP HV KL+RQTD V+FSFDGD AGR+AARRAL+ACLPHA+DN Sbjct: 274 LAQLGFPQAVATLGTACTPTHVHKLLRQTDHVVFSFDGDRAGRKAARRALDACLPHATDN 333 Query: 301 KTIKFLFLPKEHDPDSYVREMGAPAFEEQIREAMPLSQFLLKEIIGENDLRTPEGRAHAQ 360 K IKFLFLP+EHDPDS+VREMGA AFE QI +AMPLSQFLL E+ E DL T EGRA AQ Sbjct: 334 KVIKFLFLPQEHDPDSFVREMGAEAFERQIHDAMPLSQFLLNEVTAEADLSTSEGRARAQ 393 Query: 361 FAAKPLLQALPASGLRLQIVRSVAQATQTTPAELEVLFELEKPVARVRSAPPRTKRTAPV 420 + AKPL+Q +P S LRLQIVR +AQ TQ+TP E+E LFEL KP+A R APPR+ R PV Sbjct: 394 YDAKPLMQLMPPSSLRLQIVRGLAQLTQSTPNEIESLFELAKPIASARRAPPRSNRPPPV 453 Query: 421 GLERQIMRLLVAHPQLSADLDAAALEAIARIAPDQAELLAHLVGVAQGMGEQANFAALVE 480 GLERQI+RLLVAHP +++LD AAL+A+A APD+AE+LA L+ + MGEQANFA L E Sbjct: 454 GLERQIIRLLVAHPAFASELDDAALDAVAHFAPDRAEMLARLITASHAMGEQANFATLAE 513 Query: 481 HLREGGPEFDSMIAEIAAESESEFDVVRAEMAGAIRQARIRALDDEMQMLVASNLRTEEE 540 HLREGG +F+S+IAEIAAESESE + R E+AGAIRQ +++ L +E+ L A+ L ++ Sbjct: 514 HLREGGEDFESLIAEIAAESESETEAARLELAGAIRQTKMKTLKEELDQLAATGLGNDDA 573 Query: 541 RNRYRELMQRKEWLKRQ 557 RNRYRELMQ++E L+R+ Sbjct: 574 RNRYRELMQKQEQLRRE 590 >ref|YP_001352182.1| DNA primase [Janthinobacterium sp. Marseille] gb|ABR88395.1| DNA primase [Janthinobacterium sp. Marseille] Length = 599 Score = 805 bits (2078), Expect = 0.0, Method: Composition-based stats. Identities = 420/557 (75%), Positives = 480/557 (86%) Query: 1 MGLCPFHNEKSPSFTVSPTKQFYHCFGCGAHGTAISFLIEYSGMGFVEAVKDLAQNVGMV 60 MGLCPFHNEKSPSFTVSPTKQFYHCFGCGAHGTAI FLIEYSGMGFVEAVKDLAQNVGM+ Sbjct: 34 MGLCPFHNEKSPSFTVSPTKQFYHCFGCGAHGTAIGFLIEYSGMGFVEAVKDLAQNVGMI 93 Query: 61 VPEREDNIPLAQRQEKQAKSMALSDVMTRANDFYRHQLRSAQPAIAYLKGRGLTGEVAAR 120 VPE ED +P AQR E QAKSMALS+ MT+A D+YR QLR A+ A YL GRGLTGE+AAR Sbjct: 94 VPEAEDRLPPAQRAEHQAKSMALSEAMTQACDYYRQQLRHAERAKNYLIGRGLTGEIAAR 153 Query: 121 FGLGYSPDEWDSLRQVFPDYENEVLVESGLVIDKSEEGGGHRKRYDRFRGRIMFPIRNTK 180 +G+GY+PD WD LR VFPDYE E LVESGLVIDK+EE G +RKRYDRFR RIMFPIRNTK Sbjct: 154 YGMGYAPDGWDGLRSVFPDYEVEALVESGLVIDKAEEEGANRKRYDRFRDRIMFPIRNTK 213 Query: 181 GQVIGFGGRVMDGGEPKYLNSPETPLFQKGSELYGLFEARQAIREAGYVLVTEGYMDVVA 240 GQVIGFGGRV+D GEPKYLNSPETPLFQKGSELYGLFEARQAIREAGY LVTEGYMDVVA Sbjct: 214 GQVIGFGGRVLDNGEPKYLNSPETPLFQKGSELYGLFEARQAIREAGYALVTEGYMDVVA 273 Query: 241 LAQLGFPQAVATLGTACTPIHVQKLVRQTDEVIFSFDGDNAGRRAARRALEACLPHASDN 300 LAQLGFPQAVATLGTACTPIHVQKL+RQTD+VIFSFDGD AGRRAARRALEA LPHA DN Sbjct: 274 LAQLGFPQAVATLGTACTPIHVQKLLRQTDQVIFSFDGDKAGRRAARRALEASLPHAGDN 333 Query: 301 KTIKFLFLPKEHDPDSYVREMGAPAFEEQIREAMPLSQFLLKEIIGENDLRTPEGRAHAQ 360 K IKFLFLP EHDPDSY+RE+G AFE+Q+++AMPLSQFLLKE +G+NDL TPEGRA AQ Sbjct: 334 KVIKFLFLPSEHDPDSYIRELGTEAFEKQVQDAMPLSQFLLKEAVGDNDLGTPEGRARAQ 393 Query: 361 FAAKPLLQALPASGLRLQIVRSVAQATQTTPAELEVLFELEKPVARVRSAPPRTKRTAPV 420 F AKPLLQALP S LRLQIVRS+AQ T++TPAE+E LFEL +P++RVR+APPRTKR AP Sbjct: 394 FDAKPLLQALPPSSLRLQIVRSLAQITESTPAEIEALFELAQPISRVRAAPPRTKRAAPQ 453 Query: 421 GLERQIMRLLVAHPQLSADLDAAALEAIARIAPDQAELLAHLVGVAQGMGEQANFAALVE 480 GLERQIMRLLV+HP L+A++D AAL+ A AP++AE+L LV +++ MG QANFA L E Sbjct: 454 GLERQIMRLLVSHPILAAEMDQAALDIAAHFAPERAEMLVQLVTLSREMGPQANFAILAE 513 Query: 481 HLREGGPEFDSMIAEIAAESESEFDVVRAEMAGAIRQARIRALDDEMQMLVASNLRTEEE 540 LR G +F+ +IAEIAAE ES+ + R E+AGAIRQ +++AL DE+ LVA+ L E+ Sbjct: 514 LLRSSGSDFEPLIAEIAAEPESDVALARLELAGAIRQTKMQALRDELDQLVAAGLVGEQA 573 Query: 541 RNRYRELMQRKEWLKRQ 557 + R+REL +++ L+RQ Sbjct: 574 QARFRELTLQQDQLRRQ 590 >ref|YP_001098787.1| DNA primase [Herminiimonas arsenicoxydans] emb|CAL60658.1| DNA primase [Herminiimonas arsenicoxydans] Length = 602 Score = 796 bits (2057), Expect = 0.0, Method: Composition-based stats. Identities = 418/566 (73%), Positives = 476/566 (84%), Gaps = 3/566 (0%) Query: 1 MGLCPFHNEKSPSFTVSPTKQFYHCFGCGAHGTAISFLIEYSGMGFVEAVKDLAQNVGMV 60 MGLCPFHNEKSPSFTVSPTKQFYHCFGCGAHGTAI FLIEYSGMGFVEAVKDLAQNVGM+ Sbjct: 34 MGLCPFHNEKSPSFTVSPTKQFYHCFGCGAHGTAIGFLIEYSGMGFVEAVKDLAQNVGML 93 Query: 61 VPEREDNIPLAQRQEKQAKSMALSDVMTRANDFYRHQLRSAQPAIAYLKGRGLTGEVAAR 120 VPE ED +P AQR E+QAKSMALS+ M RA DFYR QLR A+ A YL GRGLTGEVAAR Sbjct: 94 VPEAEDRLPPAQRAEQQAKSMALSEAMNRACDFYRQQLRHAEGAKNYLIGRGLTGEVAAR 153 Query: 121 FGLGYSPDEWDSLRQVFPDYENEVLVESGLVIDKSEEGGG---HRKRYDRFRGRIMFPIR 177 +G+GY+PD WD LR VFPDYE + LVE GLVIDK+EE G RKRYDRFR RIMFPIR Sbjct: 154 YGMGYAPDGWDGLRAVFPDYELDALVECGLVIDKAEEEGADHRQRKRYDRFRDRIMFPIR 213 Query: 178 NTKGQVIGFGGRVMDGGEPKYLNSPETPLFQKGSELYGLFEARQAIREAGYVLVTEGYMD 237 N+KGQVIGFGGRVM GEPKYLNSPETPLFQKGSELYGLFEARQAIREAGY LVTEGYMD Sbjct: 214 NSKGQVIGFGGRVMGDGEPKYLNSPETPLFQKGSELYGLFEARQAIREAGYALVTEGYMD 273 Query: 238 VVALAQLGFPQAVATLGTACTPIHVQKLVRQTDEVIFSFDGDNAGRRAARRALEACLPHA 297 VVALAQLGFPQAVATLGTACT IHVQKL+RQTD+VIFSFDGD AGRRAARRALEA LP+A Sbjct: 274 VVALAQLGFPQAVATLGTACTSIHVQKLLRQTDQVIFSFDGDKAGRRAARRALEASLPYA 333 Query: 298 SDNKTIKFLFLPKEHDPDSYVREMGAPAFEEQIREAMPLSQFLLKEIIGENDLRTPEGRA 357 DNK IKFLFLP EHDPDSY+R MGA +FE+Q+++AMPLSQFLLKE +G+NDL TPEGRA Sbjct: 334 GDNKVIKFLFLPSEHDPDSYIRAMGAESFEKQVQDAMPLSQFLLKEAVGDNDLGTPEGRA 393 Query: 358 HAQFAAKPLLQALPASGLRLQIVRSVAQATQTTPAELEVLFELEKPVARVRSAPPRTKRT 417 QF AKPLLQALP S LRLQIVR +AQ T++TPAE+E LFEL +P++RVR+APP+ KRT Sbjct: 394 RTQFDAKPLLQALPPSSLRLQIVRGLAQITESTPAEIEALFELVQPISRVRAAPPKGKRT 453 Query: 418 APVGLERQIMRLLVAHPQLSADLDAAALEAIARIAPDQAELLAHLVGVAQGMGEQANFAA 477 APVGLERQIMRLLV HP L+A+LD AAL+ A AP++A++L LV +++ MG ANFA Sbjct: 454 APVGLERQIMRLLVEHPVLAAELDQAALDVAAHFAPERADMLVQLVTMSREMGVHANFAT 513 Query: 478 LVEHLREGGPEFDSMIAEIAAESESEFDVVRAEMAGAIRQARIRALDDEMQMLVASNLRT 537 L E LR G +FD+++AEIAAESES+ D R E+AGAIRQ +++ L EM+ L+AS L Sbjct: 514 LAELLRSSGSDFDTLVAEIAAESESDVDAARLELAGAIRQTKMKMLATEMETLIASGLSG 573 Query: 538 EEERNRYRELMQRKEWLKRQTGGAVA 563 E+ + RYREL ++E L+RQ +A Sbjct: 574 EQAQARYRELTLQQEQLRRQAQAEMA 599 >ref|ZP_08274383.1| DNA primase [Oxalobacteraceae bacterium IMCC9480] gb|EGF32146.1| DNA primase [Oxalobacteraceae bacterium IMCC9480] Length = 598 Score = 785 bits (2027), Expect = 0.0, Method: Composition-based stats. Identities = 409/563 (72%), Positives = 466/563 (82%) Query: 1 MGLCPFHNEKSPSFTVSPTKQFYHCFGCGAHGTAISFLIEYSGMGFVEAVKDLAQNVGMV 60 MGLCPFHNEKSPSFTVSPTKQFYHCFGCGAHGTAI FLIEYSGMGFV+AVKDLAQNVGM+ Sbjct: 34 MGLCPFHNEKSPSFTVSPTKQFYHCFGCGAHGTAIGFLIEYSGMGFVDAVKDLAQNVGMM 93 Query: 61 VPEREDNIPLAQRQEKQAKSMALSDVMTRANDFYRHQLRSAQPAIAYLKGRGLTGEVAAR 120 VPE +D +P AQR E QAKS+ALS+ MT+A D YR QLR+A+ A YL GRGLTGE+AAR Sbjct: 94 VPESDDKMPPAQRAEYQAKSLALSEAMTQACDHYRLQLRTAERAKGYLIGRGLTGEIAAR 153 Query: 121 FGLGYSPDEWDSLRQVFPDYENEVLVESGLVIDKSEEGGGHRKRYDRFRGRIMFPIRNTK 180 FG+GY+P+ WDSLR VFPDYE LVE+GLVID+++E GG+RKRYDRFR RIMFPIRNTK Sbjct: 154 FGIGYAPEGWDSLRSVFPDYELTALVEAGLVIDRTDEEGGNRKRYDRFRDRIMFPIRNTK 213 Query: 181 GQVIGFGGRVMDGGEPKYLNSPETPLFQKGSELYGLFEARQAIREAGYVLVTEGYMDVVA 240 GQVIGFGGR++D GEPKYLNSPETPLFQKGSELYGLFEARQAIR+AGYVLVTEGYMDVVA Sbjct: 214 GQVIGFGGRILDSGEPKYLNSPETPLFQKGSELYGLFEARQAIRDAGYVLVTEGYMDVVA 273 Query: 241 LAQLGFPQAVATLGTACTPIHVQKLVRQTDEVIFSFDGDNAGRRAARRALEACLPHASDN 300 LAQLGFPQ VATLGTACT +HVQKL RQTD VIFSFDGD AGRRAARRALEA LP+A+DN Sbjct: 274 LAQLGFPQVVATLGTACTAVHVQKLSRQTDHVIFSFDGDGAGRRAARRALEASLPYAADN 333 Query: 301 KTIKFLFLPKEHDPDSYVREMGAPAFEEQIREAMPLSQFLLKEIIGENDLRTPEGRAHAQ 360 KTIKFLFLP EHDPDSYVRE G FE+Q+R+AMPLSQFLLK + +NDL T EGRA Q Sbjct: 334 KTIKFLFLPSEHDPDSYVREHGTAGFEQQVRDAMPLSQFLLKVVTDDNDLTTSEGRAKVQ 393 Query: 361 FAAKPLLQALPASGLRLQIVRSVAQATQTTPAELEVLFELEKPVARVRSAPPRTKRTAPV 420 F AKPLLQA+PAS LRLQIVR +AQ T+TTP E+E LFEL P ARVR+APPR KRTAPV Sbjct: 394 FDAKPLLQAMPASSLRLQIVRELAQLTRTTPTEIETLFELASPAARVRAAPPRGKRTAPV 453 Query: 421 GLERQIMRLLVAHPQLSADLDAAALEAIARIAPDQAELLAHLVGVAQGMGEQANFAALVE 480 GLE Q+MRLLVAHP L+++LD AL+A+ PD A +L LV Q MG QA+FA L E Sbjct: 454 GLELQVMRLLVAHPVLASELDQDALDAMLHFVPDSAVMLMQLVVAGQEMGAQASFAMLSE 513 Query: 481 HLREGGPEFDSMIAEIAAESESEFDVVRAEMAGAIRQARIRALDDEMQMLVASNLRTEEE 540 HLR GGPEFD MIAE+AAE ES+ D R E+AGA+RQ +++ L E+ L A + +E Sbjct: 514 HLRAGGPEFDGMIAEVAAEPESDRDAARLELAGAVRQTKMKVLKAELDQLAAGGMGHDEA 573 Query: 541 RNRYRELMQRKEWLKRQTGGAVA 563 R RYREL ++E L+R ++ Sbjct: 574 RTRYRELTLKQEQLRRDAEAEIS 596