BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2557.p (442 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774291.1| hypotehtical protein [Herbaspirillum seroped... 747 0.0 ref|YP_001352178.1| hypothetical protein mma_0488 [Janthinobacte... 656 0.0 ref|YP_001098784.1| oxidoreductase [Herminiimonas arsenicoxydans... 625 e-177 ref|YP_004751684.1| NAD(FAD)-utilizing dehydrogenase [Collimonas... 606 e-171 ref|YP_001860114.1| hypothetical protein Bphy_3945 [Burkholderia... 546 e-153 >ref|YP_003774291.1| hypotehtical protein [Herbaspirillum seropedicae SmR1] gb|ADJ62383.1| transmembrane protein (Predicted flavoprotein) [Herbaspirillum seropedicae SmR1] Length = 402 Score = 747 bits (1928), Expect = 0.0, Method: Composition-based stats. Identities = 377/402 (93%), Positives = 386/402 (96%) Query: 41 MSKNNPNQFDVAIIGAGAAGMMCAAVAGQRGRRVVLIDHAGKLAEKIRISGGGRCNFTNV 100 MSK NPN FDVAIIGAGAAGMMCAAVAGQRGRRVVLIDHAGKLAEKIRISGGGRCNFTNV Sbjct: 1 MSKTNPNHFDVAIIGAGAAGMMCAAVAGQRGRRVVLIDHAGKLAEKIRISGGGRCNFTNV 60 Query: 101 GAGPQHYLSQNPHFCRSALSRYTPQDFIGLVKRHRIGFHEKHKGQLFCDDSAEDIIAMLK 160 GAGPQHYLSQNPHFCRSALSRYTPQDFIGLVKRHRIGFHEKHKGQLFCDDSAEDIIAMLK Sbjct: 61 GAGPQHYLSQNPHFCRSALSRYTPQDFIGLVKRHRIGFHEKHKGQLFCDDSAEDIIAMLK 120 Query: 161 AECEAGNVSWRMPCSAQAVGKSGEQFRIATSAGEIQASSLVIATGGLSIPKIGATDFAYR 220 AEC+AGNVSWRMPC+ Q VGKS E FRIATSAGEIQA+SLVIATGGLSIPKIGATDFAYR Sbjct: 121 AECDAGNVSWRMPCTVQEVGKSSEHFRIATSAGEIQAASLVIATGGLSIPKIGATDFAYR 180 Query: 221 IARQFDLKLVETRPGLVPLTFDGKAWQSLTELAGIALEVSVETGEKKERGHFLEDLLFTH 280 IARQFDLKLVETRPGLVPLTFDGKAWQSLTELAGIALEV VETG KKERGHFLEDLLFTH Sbjct: 181 IARQFDLKLVETRPGLVPLTFDGKAWQSLTELAGIALEVEVETGAKKERGHFLEDLLFTH 240 Query: 281 RGLSGPAILQISSFWRPGTPLRLNLLPELDVAQLLIHGKGTLKKNLGNLLAQWLPNRLAE 340 RGLSGPAILQISS+W+PGTPL LNLLP+LDVA+ LI GKGT+KKNLGN+LAQWLPNRLAE Sbjct: 241 RGLSGPAILQISSYWKPGTPLTLNLLPQLDVAETLIDGKGTIKKNLGNILAQWLPNRLAE 300 Query: 341 GWLKINGFDANARIADMPDKSLKKLGDSLNHWVILPSGSEGYRKAEVTLGGVDTRELSQQ 400 GWLKINGFDA RIADMPDKSLKKLGDSLN WVILPSGSEGYRKAEVTLGGVDTRELSQQ Sbjct: 301 GWLKINGFDAGGRIADMPDKSLKKLGDSLNRWVILPSGSEGYRKAEVTLGGVDTRELSQQ 360 Query: 401 TMMANKVPGLHFIGEATDVTGWLGGYNFQWAWASGVAAGSAV 442 TMMANKVPGLH IGEA DVTGWLGGYNFQWAWASGVAAGSAV Sbjct: 361 TMMANKVPGLHVIGEAMDVTGWLGGYNFQWAWASGVAAGSAV 402 >ref|YP_001352178.1| hypothetical protein mma_0488 [Janthinobacterium sp. Marseille] gb|ABR89425.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 398 Score = 656 bits (1693), Expect = 0.0, Method: Composition-based stats. Identities = 309/395 (78%), Positives = 349/395 (88%) Query: 48 QFDVAIIGAGAAGMMCAAVAGQRGRRVVLIDHAGKLAEKIRISGGGRCNFTNVGAGPQHY 107 QFDVA+IGAGAAGMMCA+VAGQRG+ VVLIDHA KLAEKIRISGGGRCNFTN+ A PQ++ Sbjct: 4 QFDVAVIGAGAAGMMCASVAGQRGKSVVLIDHAAKLAEKIRISGGGRCNFTNIDATPQNF 63 Query: 108 LSQNPHFCRSALSRYTPQDFIGLVKRHRIGFHEKHKGQLFCDDSAEDIIAMLKAECEAGN 167 LSQNPHFC+SALSRYTPQDF+ L+KR+RI +HEKHKGQLFCD+SAEDII MLKAEC GN Sbjct: 64 LSQNPHFCKSALSRYTPQDFLALMKRYRIAYHEKHKGQLFCDNSAEDIINMLKAECALGN 123 Query: 168 VSWRMPCSAQAVGKSGEQFRIATSAGEIQASSLVIATGGLSIPKIGATDFAYRIARQFDL 227 VSWRMPC+ ++ KSGEQFRI T+ G+I A+SLVIATGGLSIPKIGATDFAYRIA+QFDL Sbjct: 124 VSWRMPCTVVSIAKSGEQFRIETNTGDILANSLVIATGGLSIPKIGATDFAYRIAKQFDL 183 Query: 228 KLVETRPGLVPLTFDGKAWQSLTELAGIALEVSVETGEKKERGHFLEDLLFTHRGLSGPA 287 K++E RPGLVPLTFD AWQ L+GIAL V VETG KK RG+F EDLLFTHRGLSGPA Sbjct: 184 KMIEPRPGLVPLTFDANAWQPFVPLSGIALPVEVETGAKKTRGYFKEDLLFTHRGLSGPA 243 Query: 288 ILQISSFWRPGTPLRLNLLPELDVAQLLIHGKGTLKKNLGNLLAQWLPNRLAEGWLKING 347 ILQISSFW+PGTPL +NL+PE D+A+ LI GK + KKNLGN LAQWLP+RLA+ WL +N Sbjct: 244 ILQISSFWQPGTPLTINLVPETDIAEALIEGKASSKKNLGNQLAQWLPSRLADEWLAVND 303 Query: 348 FDANARIADMPDKSLKKLGDSLNHWVILPSGSEGYRKAEVTLGGVDTRELSQQTMMANKV 407 F A+AR+ADM DK L+KLG SLN W I+P+GSEGYRKAEVTLGG+DTRELSQQTMM +KV Sbjct: 304 FKADARVADMQDKQLRKLGASLNQWSIIPNGSEGYRKAEVTLGGIDTRELSQQTMMVSKV 363 Query: 408 PGLHFIGEATDVTGWLGGYNFQWAWASGVAAGSAV 442 PGLHFIGE+ DVTGWLGGYNFQWAWASGVAAG AV Sbjct: 364 PGLHFIGESVDVTGWLGGYNFQWAWASGVAAGQAV 398 >ref|YP_001098784.1| oxidoreductase [Herminiimonas arsenicoxydans] emb|CAL60655.1| conserved hypothetical protein; putative FAD/NAD(P)-binding domain [Herminiimonas arsenicoxydans] Length = 398 Score = 625 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 304/395 (76%), Positives = 346/395 (87%) Query: 48 QFDVAIIGAGAAGMMCAAVAGQRGRRVVLIDHAGKLAEKIRISGGGRCNFTNVGAGPQHY 107 Q DV +IGAGAAGMMCAAVAGQRG+ VVLIDHA KLAEKIRISGGGRCNFTN+ A PQ++ Sbjct: 4 QVDVVVIGAGAAGMMCAAVAGQRGKSVVLIDHAAKLAEKIRISGGGRCNFTNIDATPQNF 63 Query: 108 LSQNPHFCRSALSRYTPQDFIGLVKRHRIGFHEKHKGQLFCDDSAEDIIAMLKAECEAGN 167 LSQNPHFC+SALSRYTPQDF+ L+KR+RI +HEKHKGQLFCDD+AEDII MLKAEC GN Sbjct: 64 LSQNPHFCKSALSRYTPQDFLALMKRYRIAYHEKHKGQLFCDDTAEDIINMLKAECALGN 123 Query: 168 VSWRMPCSAQAVGKSGEQFRIATSAGEIQASSLVIATGGLSIPKIGATDFAYRIARQFDL 227 V+WRMPC+ +A+ K GE FRI T AG+I A+S+VIATGGLSIPKIGATDFAYRIA+QFDL Sbjct: 124 VAWRMPCNVKAINKDGELFRIETDAGDILANSVVIATGGLSIPKIGATDFAYRIAKQFDL 183 Query: 228 KLVETRPGLVPLTFDGKAWQSLTELAGIALEVSVETGEKKERGHFLEDLLFTHRGLSGPA 287 K+VE RP LVPLTFD ++WQ LAGIAL V VETG KK RG+F EDLLFTHRGLSGPA Sbjct: 184 KMVEPRPALVPLTFDAESWQPFVALAGIALPVEVETGSKKARGYFKEDLLFTHRGLSGPA 243 Query: 288 ILQISSFWRPGTPLRLNLLPELDVAQLLIHGKGTLKKNLGNLLAQWLPNRLAEGWLKING 347 ILQISSFW+PG PL +NL+PE+D+A+ LI GK + KKNLGN LAQWLP+RLA+ WL +NG Sbjct: 244 ILQISSFWQPGAPLIINLVPEVDIAEALIEGKSSSKKNLGNQLAQWLPSRLADEWLIVNG 303 Query: 348 FDANARIADMPDKSLKKLGDSLNHWVILPSGSEGYRKAEVTLGGVDTRELSQQTMMANKV 407 F +AR+ADM DK L++LG S+N W I+P+GSEGYRKAEVTLGG+DTRELSQQTMM NKV Sbjct: 304 FKGDARVADMQDKQLRQLGASINRWSIIPNGSEGYRKAEVTLGGIDTRELSQQTMMVNKV 363 Query: 408 PGLHFIGEATDVTGWLGGYNFQWAWASGVAAGSAV 442 PGLHFIGE+ DVTGWLGGYNFQWAWASGVAAG AV Sbjct: 364 PGLHFIGESVDVTGWLGGYNFQWAWASGVAAGQAV 398 >ref|YP_004751684.1| NAD(FAD)-utilizing dehydrogenase [Collimonas fungivorans Ter331] gb|AEK60861.1| NAD(FAD)-utilizing dehydrogenase [Collimonas fungivorans Ter331] Length = 398 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 297/395 (75%), Positives = 342/395 (86%) Query: 48 QFDVAIIGAGAAGMMCAAVAGQRGRRVVLIDHAGKLAEKIRISGGGRCNFTNVGAGPQHY 107 QFDVA+IGAGAAGMMCAAVAGQRG++VVLIDHA KLAEKIRISGGGRCNFTN+ AGPQ++ Sbjct: 4 QFDVAVIGAGAAGMMCAAVAGQRGKKVVLIDHATKLAEKIRISGGGRCNFTNINAGPQNF 63 Query: 108 LSQNPHFCRSALSRYTPQDFIGLVKRHRIGFHEKHKGQLFCDDSAEDIIAMLKAECEAGN 167 LSQNPHFC+SALSRYTPQDF+ LVKR+RI +HEKHKGQLFCDDS+E IIAMLKAECE GN Sbjct: 64 LSQNPHFCKSALSRYTPQDFLSLVKRYRIAYHEKHKGQLFCDDSSEQIIAMLKAECELGN 123 Query: 168 VSWRMPCSAQAVGKSGEQFRIATSAGEIQASSLVIATGGLSIPKIGATDFAYRIARQFDL 227 VSWRMPCS +GKSG+ FRI +SAGEI AS++VIATGGLSIPKIGATDFAYRIARQF + Sbjct: 124 VSWRMPCSVADIGKSGDLFRIDSSAGEILASNVVIATGGLSIPKIGATDFAYRIARQFGM 183 Query: 228 KLVETRPGLVPLTFDGKAWQSLTELAGIALEVSVETGEKKERGHFLEDLLFTHRGLSGPA 287 +++E +PGLVPLTFD AWQ LAGIAL V VETG+KK RG F EDLLFTHRGLSGPA Sbjct: 184 RMIEPQPGLVPLTFDAAAWQPFLPLAGIALPVEVETGDKKNRGEFKEDLLFTHRGLSGPA 243 Query: 288 ILQISSFWRPGTPLRLNLLPELDVAQLLIHGKGTLKKNLGNLLAQWLPNRLAEGWLKING 347 ILQISSFW+ G L+LNLLP++DV Q L+ GK ++KKNLGNL AQWLP RLA G ++ N Sbjct: 244 ILQISSFWKSGASLQLNLLPDIDVTQTLLDGKTSIKKNLGNLFAQWLPARLAHGIIEANR 303 Query: 348 FDANARIADMPDKSLKKLGDSLNHWVILPSGSEGYRKAEVTLGGVDTRELSQQTMMANKV 407 D AR+AD PD+ L++LG+++N W I P+GSEGYRKAEVTLGG+DTRELSQQ+MM+N+ Sbjct: 304 LDPAARLADTPDRVLRELGNAVNRWAIQPNGSEGYRKAEVTLGGIDTRELSQQSMMSNRT 363 Query: 408 PGLHFIGEATDVTGWLGGYNFQWAWASGVAAGSAV 442 GL+FIGEA DVTGWLGGYNFQWAWAS A G A+ Sbjct: 364 TGLYFIGEAVDVTGWLGGYNFQWAWASATATGFAI 398 >ref|YP_001860114.1| hypothetical protein Bphy_3945 [Burkholderia phymatum STM815] gb|ACC73068.1| HI0933 family protein [Burkholderia phymatum STM815] Length = 405 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 257/394 (65%), Positives = 325/394 (82%), Gaps = 1/394 (0%) Query: 49 FDVAIIGAGAAGMMCAAVAGQRGRRVVLIDHAGKLAEKIRISGGGRCNFTNVGAGPQHYL 108 FD+A+IGAGAAGMMCA+VAGQ GRRVVLIDHA +LAEKIRISGGGRCNFTN+ AGP +YL Sbjct: 4 FDIAVIGAGAAGMMCASVAGQLGRRVVLIDHAARLAEKIRISGGGRCNFTNLYAGPANYL 63 Query: 109 SQNPHFCRSALSRYTPQDFIGLVKRHRIGFHEKHKGQLFCDDSAEDIIAMLKAECEAGNV 168 S NPHFCRSAL+RYTP+DF+ L+K++R+ +HEKHKGQLFCD S++ +I +LK+EC+AGN+ Sbjct: 64 SANPHFCRSALARYTPRDFMALLKQYRVTWHEKHKGQLFCDQSSDAVIDVLKSECDAGNI 123 Query: 169 SWRMPCSAQAVGKS-GEQFRIATSAGEIQASSLVIATGGLSIPKIGATDFAYRIARQFDL 227 +WR P + + V +S + F + T AG I+A +LVIATGGLSIPKIGATDFAYR+A+QF Sbjct: 124 AWRRPLAVEQVRRSESDGFVLDTQAGPIRAHALVIATGGLSIPKIGATDFAYRVAKQFGH 183 Query: 228 KLVETRPGLVPLTFDGKAWQSLTELAGIALEVSVETGEKKERGHFLEDLLFTHRGLSGPA 287 KL++TRP LVPLTF WQ +EL+G++LEV + TG KK G F+EDLL THRGLSGP Sbjct: 184 KLIDTRPALVPLTFASADWQPFSELSGVSLEVHLATGAKKTGGEFVEDLLLTHRGLSGPG 243 Query: 288 ILQISSFWRPGTPLRLNLLPELDVAQLLIHGKGTLKKNLGNLLAQWLPNRLAEGWLKING 347 +LQISS+W+PG P+ +NLLPE L+ K K+ +G+LLA+W+P RLA WL+ +G Sbjct: 244 VLQISSYWQPGEPVHINLLPEQHAVAALLEAKSATKRQIGSLLAEWVPTRLAHVWLQTHG 303 Query: 348 FDANARIADMPDKSLKKLGDSLNHWVILPSGSEGYRKAEVTLGGVDTRELSQQTMMANKV 407 A+AR+AD+PDK+L+++G++L+ W + P+G+EGYRKAEVT GGVDTRELS TMM+ +V Sbjct: 304 VSADARLADLPDKALRRVGEALSRWTLTPNGTEGYRKAEVTRGGVDTRELSSATMMSARV 363 Query: 408 PGLHFIGEATDVTGWLGGYNFQWAWASGVAAGSA 441 PGL+FIGEA DVTGWLGGYNFQWAWASGVAAG A Sbjct: 364 PGLYFIGEAVDVTGWLGGYNFQWAWASGVAAGQA 397