BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2550.p (420 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774285.1| transcription termination factor Rho protein... 799 0.0 ref|YP_001099026.1| transcription termination factor Rho [Hermin... 779 0.0 ref|YP_004751529.1| transcription termination factor Rho [Collim... 778 0.0 ref|YP_001352312.1| transcription termination factor Rho [Janthi... 778 0.0 ref|ZP_04575933.1| transcription termination factor Rho [Oxaloba... 750 0.0 >ref|YP_003774285.1| transcription termination factor Rho protein [Herbaspirillum seropedicae SmR1] gb|ADJ62377.1| transcription termination factor Rho protein [Herbaspirillum seropedicae SmR1] Length = 420 Score = 799 bits (2064), Expect = 0.0, Method: Composition-based stats. Identities = 420/420 (100%), Positives = 420/420 (100%) Query: 1 MHLSELKAMHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60 MHLSELKAMHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD Sbjct: 1 MHLSELKAMHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60 Query: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN Sbjct: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 Query: 121 GEPPEASKHRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASP 180 GEPPEASKHRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASP Sbjct: 121 GEPPEASKHRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASP 180 Query: 181 KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240 KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV Sbjct: 181 KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240 Query: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF Sbjct: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 Query: 301 FGAARNVEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360 FGAARNVEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL Sbjct: 301 FGAARNVEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360 Query: 361 SKSGTRREELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRGN 420 SKSGTRREELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRGN Sbjct: 361 SKSGTRREELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRGN 420 >ref|YP_001099026.1| transcription termination factor Rho [Herminiimonas arsenicoxydans] emb|CAL60899.1| transcription termination factor (ATP-dependent helicase rho) [Herminiimonas arsenicoxydans] Length = 421 Score = 779 bits (2011), Expect = 0.0, Method: Composition-based stats. Identities = 405/420 (96%), Positives = 415/420 (98%) Query: 1 MHLSELKAMHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60 MHLSELKA+HVSALLEMAISLDI+NAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD Sbjct: 1 MHLSELKALHVSALLEMAISLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60 Query: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN Sbjct: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 Query: 121 GEPPEASKHRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASP 180 GE PEASKHRILFENLTPLHPNK L LERDMRGEENITGR+IDLIAP+G+GQRGLLVASP Sbjct: 121 GEAPEASKHRILFENLTPLHPNKPLLLERDMRGEENITGRVIDLIAPIGKGQRGLLVASP 180 Query: 181 KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240 KSGKSV+LQHIAHAITTNHPD VMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV Sbjct: 181 KSGKSVILQHIAHAITTNHPDVVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240 Query: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF Sbjct: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 Query: 301 FGAARNVEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360 FGAARN+EEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL Sbjct: 301 FGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360 Query: 361 SKSGTRREELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRGN 420 +KSGTRREELLIKPDQLQKIWVLRKL+Y MDEIEAMEFILDKMK+TKNNAEFFDMMRRGN Sbjct: 361 NKSGTRREELLIKPDQLQKIWVLRKLLYGMDEIEAMEFILDKMKATKNNAEFFDMMRRGN 420 >ref|YP_004751529.1| transcription termination factor Rho [Collimonas fungivorans Ter331] gb|AEK60706.1| Transcription termination factor Rho [Collimonas fungivorans Ter331] Length = 420 Score = 778 bits (2010), Expect = 0.0, Method: Composition-based stats. Identities = 405/419 (96%), Positives = 414/419 (98%) Query: 1 MHLSELKAMHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60 MHLSELKA+HVSALLEMAI LDI+NAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD Sbjct: 1 MHLSELKALHVSALLEMAIGLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60 Query: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN Sbjct: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 Query: 121 GEPPEASKHRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASP 180 GE PEASKHRILFENLTPLHPNK L LERDMRGEENITGRIID+IAP+G+GQRGLLVASP Sbjct: 121 GESPEASKHRILFENLTPLHPNKPLPLERDMRGEENITGRIIDMIAPIGKGQRGLLVASP 180 Query: 181 KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240 KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV Sbjct: 181 KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240 Query: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF Sbjct: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 Query: 301 FGAARNVEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360 FGAARN+EEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYP+INL Sbjct: 301 FGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL 360 Query: 361 SKSGTRREELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRG 419 +KSGTRREELLIKPDQLQKIWVLRKL+Y MDEIEAMEFILDKMKSTKNNAEFFDMMRRG Sbjct: 361 NKSGTRREELLIKPDQLQKIWVLRKLLYSMDEIEAMEFILDKMKSTKNNAEFFDMMRRG 419 >ref|YP_001352312.1| transcription termination factor Rho [Janthinobacterium sp. Marseille] gb|ABR88881.1| Rho transcription termination factor [Janthinobacterium sp. Marseille] Length = 421 Score = 778 bits (2008), Expect = 0.0, Method: Composition-based stats. Identities = 406/420 (96%), Positives = 415/420 (98%) Query: 1 MHLSELKAMHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60 MHLSELKA+HVSALLEMAISLDI+NAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD Sbjct: 1 MHLSELKALHVSALLEMAISLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60 Query: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN Sbjct: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 Query: 121 GEPPEASKHRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASP 180 GE PEASKHRILFENLTPLHPNK L LERDMRGEENITGRIIDLIAP+G+GQRGLLVASP Sbjct: 121 GESPEASKHRILFENLTPLHPNKPLLLERDMRGEENITGRIIDLIAPIGKGQRGLLVASP 180 Query: 181 KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240 KSGKSVMLQHIAHAITTNHP+ VMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV Sbjct: 181 KSGKSVMLQHIAHAITTNHPEAVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240 Query: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF Sbjct: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 Query: 301 FGAARNVEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360 FGAARN+EEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL Sbjct: 301 FGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360 Query: 361 SKSGTRREELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRGN 420 +KSGTRREELLIKPDQLQKIWVLRKL+Y MDEIEAMEFILDKMK+TKNNAEFFDMMRRGN Sbjct: 361 NKSGTRREELLIKPDQLQKIWVLRKLLYGMDEIEAMEFILDKMKATKNNAEFFDMMRRGN 420 >ref|ZP_04575933.1| transcription termination factor Rho [Oxalobacter formigenes HOxBLS] gb|EEO26895.1| transcription termination factor Rho [Oxalobacter formigenes HOxBLS] Length = 420 Score = 750 bits (1937), Expect = 0.0, Method: Composition-based stats. Identities = 380/419 (90%), Positives = 410/419 (97%) Query: 1 MHLSELKAMHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60 MHLSELK++HVSALLEMA+SLDI+NAAR+RKQELMFAILKKRAK+GEQ++GDGALE+LPD Sbjct: 1 MHLSELKSLHVSALLEMALSLDIDNAARMRKQELMFAILKKRAKAGEQVYGDGALEILPD 60 Query: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN Sbjct: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 Query: 121 GEPPEASKHRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASP 180 G PPEASKHR+LFENLTPLHP++ L+LERD+ +ENITGRIID+IAP+G+GQRGLLVASP Sbjct: 121 GAPPEASKHRMLFENLTPLHPDEPLKLERDISSQENITGRIIDMIAPIGKGQRGLLVASP 180 Query: 181 KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240 KSGK+V+LQH+AHAIT NHPD + VLLIDERPEEVTEMQRSVRGEV+ASTFDEPATRHV Sbjct: 181 KSGKTVILQHMAHAITANHPDVTLFVLLIDERPEEVTEMQRSVRGEVIASTFDEPATRHV 240 Query: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF Sbjct: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 Query: 301 FGAARNVEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360 FGAARNVEEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL Sbjct: 301 FGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360 Query: 361 SKSGTRREELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRG 419 +KSGTRREELLIKPDQLQKIW+LRKL+Y MDEIEAMEFILDKMK+TKNNA+FFD+MRRG Sbjct: 361 NKSGTRREELLIKPDQLQKIWILRKLLYGMDEIEAMEFILDKMKATKNNADFFDLMRRG 419