BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2549.p         (89 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774284.1| 50S ribosomal protein (type B) L31 [Herbaspi...   158   3e-37
ref|ZP_08275991.1| LSU ribosomal protein L31p [Oxalobacteraceae ...   139   1e-31
ref|YP_001352310.1| 50S ribosomal protein L31 type B [Janthinoba...   139   1e-31
ref|ZP_04579187.1| 50S ribosomal protein L31 type B [Oxalobacter...   136   8e-31
ref|YP_004751526.1| 50S ribosomal protein L31p [Collimonas fungi...   135   1e-30

>ref|YP_003774284.1| 50S ribosomal protein (type B) L31 [Herbaspirillum seropedicae
          SmR1]
 gb|ADJ62376.1| 50S ribosomal subunit (type B) protein L31 [Herbaspirillum
          seropedicae SmR1]
          Length = 89

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 88/89 (98%), Positives = 88/89 (98%)

Query: 1  MKEGIHPDYREVLFHDMSNDFKFITRSTIGTRETGEFEGKQYPLVKIEVSSESHPFYTGK 60
          MKEGIHPDYREVLFHDMSNDFKFITRSTIGTRET EFEGKQYPLVKIEVSSESHPFYTGK
Sbjct: 1  MKEGIHPDYREVLFHDMSNDFKFITRSTIGTRETAEFEGKQYPLVKIEVSSESHPFYTGK 60

Query: 61 HKIVDTAGRVEKFRQKFGSVGSKTAVSKA 89
          HKIVDTAGRVEKFRQKFGSVGSKTAVSKA
Sbjct: 61 HKIVDTAGRVEKFRQKFGSVGSKTAVSKA 89


>ref|ZP_08275991.1| LSU ribosomal protein L31p [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF30542.1| LSU ribosomal protein L31p [Oxalobacteraceae bacterium IMCC9480]
          Length = 89

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 71/88 (80%), Positives = 80/88 (90%)

Query: 1  MKEGIHPDYREVLFHDMSNDFKFITRSTIGTRETGEFEGKQYPLVKIEVSSESHPFYTGK 60
          MK GIHP+YREVL HD+S DFKFITRST+ TRE  EFEGKQYPLVKIEVSSESHPFYTGK
Sbjct: 1  MKAGIHPNYREVLVHDLSCDFKFITRSTVQTREMAEFEGKQYPLVKIEVSSESHPFYTGK 60

Query: 61 HKIVDTAGRVEKFRQKFGSVGSKTAVSK 88
          HKIVDTAGRV+KFR+KFG VGS+T +++
Sbjct: 61 HKIVDTAGRVDKFRKKFGVVGSRTQIAQ 88


>ref|YP_001352310.1| 50S ribosomal protein L31 type B [Janthinobacterium sp.
          Marseille]
 sp|A6SVL3|RL31B_JANMA RecName: Full=50S ribosomal protein L31 type B
 gb|ABR91650.1| 50S ribosomal protein L31 [Janthinobacterium sp. Marseille]
          Length = 88

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 75/88 (85%), Positives = 83/88 (94%)

Query: 1  MKEGIHPDYREVLFHDMSNDFKFITRSTIGTRETGEFEGKQYPLVKIEVSSESHPFYTGK 60
          MKEGIHPDYR+V+F DMSNDFKFITRSTI TRET EFEG  YPLVKIEVSSESHPFYTGK
Sbjct: 1  MKEGIHPDYRDVVFQDMSNDFKFITRSTIQTRETIEFEGASYPLVKIEVSSESHPFYTGK 60

Query: 61 HKIVDTAGRVEKFRQKFGSVGSKTAVSK 88
          HKIVDTAGRV+KFR+KFG+VGSKT+V++
Sbjct: 61 HKIVDTAGRVDKFRKKFGTVGSKTSVAE 88


>ref|ZP_04579187.1| 50S ribosomal protein L31 type B [Oxalobacter formigenes OXCC13]
 gb|EEO30160.1| 50S ribosomal protein L31 type B [Oxalobacter formigenes OXCC13]
          Length = 86

 Score =  136 bits (343), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 72/85 (84%), Positives = 79/85 (92%)

Query: 1  MKEGIHPDYREVLFHDMSNDFKFITRSTIGTRETGEFEGKQYPLVKIEVSSESHPFYTGK 60
          MKEGIHPDYREV+F D+S DFKFITRSTI TRET  FEGK+YPLVK+EVS+ESHPFYTGK
Sbjct: 1  MKEGIHPDYREVVFQDVSCDFKFITRSTIATRETIMFEGKEYPLVKVEVSAESHPFYTGK 60

Query: 61 HKIVDTAGRVEKFRQKFGSVGSKTA 85
          +KIVDTAGRVEKFRQKFG+VGSK A
Sbjct: 61 YKIVDTAGRVEKFRQKFGNVGSKVA 85


>ref|YP_004751526.1| 50S ribosomal protein L31p [Collimonas fungivorans Ter331]
 gb|AEK60703.1| LSU ribosomal protein L31p [Collimonas fungivorans Ter331]
          Length = 89

 Score =  135 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 70/87 (80%), Positives = 82/87 (94%)

Query: 1  MKEGIHPDYREVLFHDMSNDFKFITRSTIGTRETGEFEGKQYPLVKIEVSSESHPFYTGK 60
          MK+GIHP+YREVLFHD+SNDFKF+TRSTI TRE    EGK+YPLVKIEVSSESHPFYTG+
Sbjct: 1  MKDGIHPNYREVLFHDVSNDFKFVTRSTIQTRENITHEGKEYPLVKIEVSSESHPFYTGQ 60

Query: 61 HKIVDTAGRVEKFRQKFGSVGSKTAVS 87
          HKIVDTAGRV+KFR+KFG+VGSKT+++
Sbjct: 61 HKIVDTAGRVDKFRKKFGAVGSKTSIA 87