BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2544.p         (151 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004125155.1| hypothetical protein Alide_0496 [Alicycliphi...   144   3e-33
ref|YP_002799608.1| hypothetical protein Avin_24460 [Azotobacter...   135   2e-30
ref|ZP_08483721.1| hypothetical protein MetalDRAFT_0446 [Methylo...   134   5e-30
ref|ZP_08406872.1| hypothetical protein HGR_13399 [Hylemonella g...   130   6e-29
ref|YP_004233102.1| hypothetical protein Acav_0612 [Acidovorax a...   129   1e-28

>ref|YP_004125155.1| hypothetical protein Alide_0496 [Alicycliphilus denitrificans BC]
 ref|YP_004386388.1| hypothetical protein Alide2_0453 [Alicycliphilus denitrificans
           K601]
 gb|ADU98267.1| hypothetical protein Alide_0496 [Alicycliphilus denitrificans BC]
 gb|AEB82872.1| hypothetical protein Alide2_0453 [Alicycliphilus denitrificans
           K601]
          Length = 140

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 68/123 (55%), Positives = 92/123 (74%)

Query: 1   METANQKFAKRLRAAMEKAGYEPKPAVLEREFNLRYWGKPMTLHGVRRWLLGESMPKQDK 60
           M+ A  +FA+RLR AM  AGYEPKPAVLEREFN R+WGKPMTLHGVRRWLLGE+MP   K
Sbjct: 1   MQDAKAQFAQRLRDAMAAAGYEPKPAVLEREFNTRHWGKPMTLHGVRRWLLGETMPDHRK 60

Query: 61  LETLAEWLIVTPQHLRFGEEISKRIDKRRARWEEAIGYREREAFEAFINLPAPQRKIVKE 120
           L TLA+WL V  Q L +G+E   R+ + + +W   +GY+++E F+ ++ LP P+R++ ++
Sbjct: 61  LATLADWLGVPVQELGYGDEGGHRVREHQPQWHSGLGYQDKELFDIYLRLPVPKRRLARD 120

Query: 121 VIF 123
           VI 
Sbjct: 121 VIL 123


>ref|YP_002799608.1| hypothetical protein Avin_24460 [Azotobacter vinelandii DJ]
 gb|ACO78633.1| hypothetical protein Avin_24460 [Azotobacter vinelandii DJ]
          Length = 138

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/120 (57%), Positives = 93/120 (77%)

Query: 8   FAKRLRAAMEKAGYEPKPAVLEREFNLRYWGKPMTLHGVRRWLLGESMPKQDKLETLAEW 67
           FA+RL+ AM  AGYEP+P+VLEREFNLRY G+P+T   VRRWL G+S+P+QDKL+ LA+W
Sbjct: 7   FAERLKTAMLAAGYEPRPSVLEREFNLRYLGRPLTFQAVRRWLRGDSLPEQDKLQVLADW 66

Query: 68  LIVTPQHLRFGEEISKRIDKRRARWEEAIGYREREAFEAFINLPAPQRKIVKEVIFAFSQ 127
           L V PQ LRFGE+  ++I + R RWE A+   ERE  +A+++LP  QRK+V+EVI  F++
Sbjct: 67  LGVEPQVLRFGEQAVQKIQENRGRWETALKGEEREVLQAYLSLPVEQRKVVREVILTFAK 126


>ref|ZP_08483721.1| hypothetical protein MetalDRAFT_0446 [Methylomicrobium album BG8]
 gb|EGL05693.1| hypothetical protein MetalDRAFT_0446 [Methylomicrobium album BG8]
          Length = 133

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 73/122 (59%), Positives = 94/122 (77%)

Query: 7   KFAKRLRAAMEKAGYEPKPAVLEREFNLRYWGKPMTLHGVRRWLLGESMPKQDKLETLAE 66
           +FA+RLR AM  AGYE +PAVLE+ FN RYWG+ ++   V RWL GE++P QDKL+ LAE
Sbjct: 6   EFAERLRKAMLSAGYEARPAVLEKGFNSRYWGRSVSFQAVSRWLRGEAIPSQDKLQVLAE 65

Query: 67  WLIVTPQHLRFGEEISKRIDKRRARWEEAIGYREREAFEAFINLPAPQRKIVKEVIFAFS 126
           WL V P  LR+GEE +  I ++R +WEEA+ Y EREA E +++LPAPQRKIV+EVI AF+
Sbjct: 66  WLKVEPHALRYGEEAALSIREKRKQWEEALDYGEREAIEQYLSLPAPQRKIVREVISAFA 125

Query: 127 QV 128
           QV
Sbjct: 126 QV 127


>ref|ZP_08406872.1| hypothetical protein HGR_13399 [Hylemonella gracilis ATCC 19624]
 gb|EGI76038.1| hypothetical protein HGR_13399 [Hylemonella gracilis ATCC 19624]
          Length = 138

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 68/122 (55%), Positives = 86/122 (70%)

Query: 8   FAKRLRAAMEKAGYEPKPAVLEREFNLRYWGKPMTLHGVRRWLLGESMPKQDKLETLAEW 67
           FA+RLR AME AG +P+P+VL   FN RYWG+ +T   V RWL GE++P QDKL  LAE 
Sbjct: 7   FARRLREAMEAAGLDPRPSVLLNLFNSRYWGRSVTFQAVSRWLKGEAIPAQDKLVVLAEL 66

Query: 68  LIVTPQHLRFGEEISKRIDKRRARWEEAIGYREREAFEAFINLPAPQRKIVKEVIFAFSQ 127
           L V P  LRFG +   R+  R  RWEE +GY ERE FEAF+NLP PQRK+V ++I AF+ 
Sbjct: 67  LRVEPSVLRFGVQSQARLQARERRWEEGVGYTERETFEAFLNLPPPQRKLVGDIIRAFAA 126

Query: 128 VA 129
           ++
Sbjct: 127 LS 128


>ref|YP_004233102.1| hypothetical protein Acav_0612 [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gb|ADX44535.1| hypothetical protein Acav_0612 [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 142

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 67/129 (51%), Positives = 91/129 (70%), Gaps = 3/129 (2%)

Query: 2   ETANQKFAKRLRAAMEKAGYEPKPAVLEREFNLRYWGKPMTLHGVRRWLLGESMPKQDKL 61
           + A QKFA++LR AME AGYEPKP+VLEREFN R+WGKPMTLHGVRRWLLGE+MP   KL
Sbjct: 3   DQAKQKFARKLREAMETAGYEPKPSVLEREFNTRHWGKPMTLHGVRRWLLGETMPGPRKL 62

Query: 62  ETLAEWLIVTPQ---HLRFGEEISKRIDKRRARWEEAIGYREREAFEAFINLPAPQRKIV 118
            TL++WL V  +    +  G  + +   +   +W   +GY +RE F+ ++ LP PQR++ 
Sbjct: 63  TTLSQWLRVPLEDFVDVGDGSPVLRAAGEPLHKWHAGLGYDDRELFDIYLKLPVPQRRLA 122

Query: 119 KEVIFAFSQ 127
           +EVI A ++
Sbjct: 123 REVILAIAR 131