BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2540.p         (184 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774276.1| hypothetical protein Hsero_0850 [Herbaspiril...   316   9e-85
ref|YP_001098770.1| putative Ala-tRNA(Pro) deacylase [Herminiimo...   281   3e-74
ref|YP_001352166.1| hypothetical protein mma_0476 [Janthinobacte...   268   3e-70
ref|YP_001896826.1| ybaK/ebsC protein [Burkholderia phytofirmans...   256   1e-66
ref|YP_003908040.1| ybaK/ebsC protein [Burkholderia sp. CCGE1003...   254   3e-66

>ref|YP_003774276.1| hypothetical protein Hsero_0850 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62368.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 166

 Score =  316 bits (810), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 159/166 (95%), Positives = 161/166 (96%)

Query: 19  MSAKKEHISETPATQFLRKQGVAFTEHPYAYEEHGGTSVSSRELGVDEHAVIKTLVMQDE 78
           MSAKKEHISETPATQFLRKQGVAFTEHPY YEEHGGTSVSSRELGVDEHAVIKTLVMQDE
Sbjct: 1   MSAKKEHISETPATQFLRKQGVAFTEHPYDYEEHGGTSVSSRELGVDEHAVIKTLVMQDE 60

Query: 79  AAKPLLVLMHGDCKVSTKNLARQIGCKSVEPCKPEVANRHSGFLIGGTSPFGTRKTMPVY 138
           AAKPLLVLMHGDCKVSTKNLARQIGCKSVEPCKPEVANRHSGFLIGGTSPFGTRK MPVY
Sbjct: 61  AAKPLLVLMHGDCKVSTKNLARQIGCKSVEPCKPEVANRHSGFLIGGTSPFGTRKAMPVY 120

Query: 139 VESTILELDKIYINGGRRGFLIGIDPAVILKVLPAKAVQCALADAA 184
           VES+ILEL KIYINGGRRGFL+GIDPAVILKVLPAK VQCALAD A
Sbjct: 121 VESSILELGKIYINGGRRGFLVGIDPAVILKVLPAKPVQCALADPA 166


>ref|YP_001098770.1| putative Ala-tRNA(Pro) deacylase [Herminiimonas arsenicoxydans]
 emb|CAL60641.1| putative prolyl-tRNA synthetase associated [Herminiimonas
           arsenicoxydans]
          Length = 163

 Score =  281 bits (719), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 135/162 (83%), Positives = 151/162 (93%)

Query: 21  AKKEHISETPATQFLRKQGVAFTEHPYAYEEHGGTSVSSRELGVDEHAVIKTLVMQDEAA 80
           AKKEHISETPAT FLR++ +AF+EHPY YEEHGGT+VS+R+LGVDEHAV+KTLVMQDEAA
Sbjct: 2   AKKEHISETPATHFLRRKEIAFSEHPYDYEEHGGTTVSARKLGVDEHAVVKTLVMQDEAA 61

Query: 81  KPLLVLMHGDCKVSTKNLARQIGCKSVEPCKPEVANRHSGFLIGGTSPFGTRKTMPVYVE 140
           KPL+VLMHGDCKVSTKNLARQIGCKSVEPCKPEVANRHSGFLIGGTSPFGTRKTMPVYVE
Sbjct: 62  KPLIVLMHGDCKVSTKNLARQIGCKSVEPCKPEVANRHSGFLIGGTSPFGTRKTMPVYVE 121

Query: 141 STILELDKIYINGGRRGFLIGIDPAVILKVLPAKAVQCALAD 182
            +IL+L+KIYINGGRRG+LIGI P V+ +VL A  VQCAL +
Sbjct: 122 QSILDLEKIYINGGRRGYLIGIAPQVLTQVLSATTVQCALEE 163


>ref|YP_001352166.1| hypothetical protein mma_0476 [Janthinobacterium sp. Marseille]
 gb|ABR90097.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 168

 Score =  268 bits (684), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 128/162 (79%), Positives = 147/162 (90%)

Query: 21  AKKEHISETPATQFLRKQGVAFTEHPYAYEEHGGTSVSSRELGVDEHAVIKTLVMQDEAA 80
           AKKEHISETPATQ+LR+QG+ F+EHPY YEEHGGT+VS+++LGVDEH V+KTLVMQDEAA
Sbjct: 7   AKKEHISETPATQWLRRQGIGFSEHPYDYEEHGGTTVSAQKLGVDEHHVVKTLVMQDEAA 66

Query: 81  KPLLVLMHGDCKVSTKNLARQIGCKSVEPCKPEVANRHSGFLIGGTSPFGTRKTMPVYVE 140
           KPL+VLMHGD KVSTKNLARQIGCKSVEPCKP+VANRHSG+LIGGTSPFGTRK MPVYVE
Sbjct: 67  KPLIVLMHGDRKVSTKNLARQIGCKSVEPCKPDVANRHSGYLIGGTSPFGTRKQMPVYVE 126

Query: 141 STILELDKIYINGGRRGFLIGIDPAVILKVLPAKAVQCALAD 182
            +IL L+ IYINGGRRG+LIGI P V++  L A+ VQCAL +
Sbjct: 127 QSILALEHIYINGGRRGYLIGIAPQVLIDKLAAQPVQCALEE 168


>ref|YP_001896826.1| ybaK/ebsC protein [Burkholderia phytofirmans PsJN]
 gb|ACD17602.1| ybaK/ebsC protein [Burkholderia phytofirmans PsJN]
          Length = 163

 Score =  256 bits (654), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 122/162 (75%), Positives = 139/162 (85%)

Query: 21  AKKEHISETPATQFLRKQGVAFTEHPYAYEEHGGTSVSSRELGVDEHAVIKTLVMQDEAA 80
           +K  H+SETPATQFLR+ GVAF EHPY Y EHGGT  S+R+LGVDEH V+KTLVM+DE A
Sbjct: 2   SKSRHVSETPATQFLRRHGVAFGEHPYDYVEHGGTGESARQLGVDEHHVVKTLVMEDEHA 61

Query: 81  KPLLVLMHGDCKVSTKNLARQIGCKSVEPCKPEVANRHSGFLIGGTSPFGTRKTMPVYVE 140
           KPL VLMHGD  VSTKNLARQIG K VEPCKPEVANRHSG+LIGGTSPFGT+K MPVYVE
Sbjct: 62  KPLTVLMHGDRTVSTKNLARQIGAKRVEPCKPEVANRHSGYLIGGTSPFGTKKQMPVYVE 121

Query: 141 STILELDKIYINGGRRGFLIGIDPAVILKVLPAKAVQCALAD 182
           S+ILE+DKI++NGGRRGFL+ IDP V+ ++L  KAVQCA  D
Sbjct: 122 SSILEMDKIWLNGGRRGFLVSIDPKVLTQLLAVKAVQCASVD 163


>ref|YP_003908040.1| ybaK/ebsC protein [Burkholderia sp. CCGE1003]
 gb|ADN58749.1| ybaK/ebsC protein [Burkholderia sp. CCGE1003]
          Length = 186

 Score =  254 bits (650), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 124/165 (75%), Positives = 141/165 (85%), Gaps = 1/165 (0%)

Query: 18  PMSAKKEHISETPATQFLRKQGVAFTEHPYAYEEHGGTSVSSRELGVDEHAVIKTLVMQD 77
           PMS K  H+SETPATQFLR+ GV F EHPY Y EHGGT  S+R+LGVDEH V+KTLVM+D
Sbjct: 23  PMS-KSRHVSETPATQFLRRHGVTFGEHPYDYVEHGGTGESARQLGVDEHHVVKTLVMED 81

Query: 78  EAAKPLLVLMHGDCKVSTKNLARQIGCKSVEPCKPEVANRHSGFLIGGTSPFGTRKTMPV 137
           E AKPL+VLMHGD  VSTKNLARQIG K VEPCKPEVANRHSG+LIGGTSPFGTRK MPV
Sbjct: 82  EHAKPLIVLMHGDRTVSTKNLARQIGAKRVEPCKPEVANRHSGYLIGGTSPFGTRKQMPV 141

Query: 138 YVESTILELDKIYINGGRRGFLIGIDPAVILKVLPAKAVQCALAD 182
           YVES+ILELD+I++NGGRRGFL+ I+P+V+  +L AK VQCA  D
Sbjct: 142 YVESSILELDRIWLNGGRRGFLVSIEPSVLTGLLAAKPVQCASVD 186