BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2539.p (307 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774275.1| site specific integrase/recombinase [Herbasp... 568 e-160 ref|YP_001352164.1| integrase/recombinase [Janthinobacterium sp.... 451 e-125 ref|YP_004754211.1| site-specific tyrosine recombinase [Collimon... 451 e-125 ref|YP_001098767.1| site-specific tyrosine recombinase [Herminii... 448 e-124 ref|ZP_08274277.1| site-specific tyrosine recombinase [Oxalobact... 442 e-122 >ref|YP_003774275.1| site specific integrase/recombinase [Herbaspirillum seropedicae SmR1] gb|ADJ62367.1| site specific integrase/recombinase protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 292/307 (95%), Positives = 301/307 (98%) Query: 1 MGRTTPKIEAPSVSREAIDEFCDSLWLEDGLSKNTLDAYRRDMTLYAHWLYQERAKALYE 60 MGRTTPKIEAP+VSREAIDEFCDSLWLEDGLSKNTL+AYRRDMT YAHWLYQERAKALYE Sbjct: 1 MGRTTPKIEAPAVSREAIDEFCDSLWLEDGLSKNTLEAYRRDMTRYAHWLYQERAKALYE 60 Query: 61 TQAEDLNAYFAARHDETKPSSSNRRLAVLKRFFQLALRQHHVTADPCLKLRSARQPQRLP 120 TQAEDLNAYFAARHD+TKPSSSNRRLAVLKRFFQLALRQHHV ADPCLKLRSARQPQR P Sbjct: 61 TQAEDLNAYFAARHDQTKPSSSNRRLAVLKRFFQLALRQHHVAADPCLKLRSARQPQRFP 120 Query: 121 KTMSEGQVEALLAAPDVSTPLGLRDRAMIELMYASGLRVSELVTLKSIEVGMNEGVLRVT 180 KT+SEGQVEALLAAPDVSTPLGLRDRAMIELMYASGLRVSELV LKSIEVGMNEGVLRVT Sbjct: 121 KTLSEGQVEALLAAPDVSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVT 180 Query: 181 GKGSKTRLVPFGEEAGAWMARYLAEARSQILQGQIDDALFVTARGGPMTRQMFWTLIKKY 240 GKGSKTRLVPFGEEAG+W+ RYLAEAR+QILQGQ+DDALFVTARGGPMTRQMFWTLIKKY Sbjct: 181 GKGSKTRLVPFGEEAGSWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKY 240 Query: 241 ALQAGITVRLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLH 300 ALQAG+T RLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLH Sbjct: 241 ALQAGVTARLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLH 300 Query: 301 AAHHPRG 307 AAHHPRG Sbjct: 301 AAHHPRG 307 >ref|YP_001352164.1| integrase/recombinase [Janthinobacterium sp. Marseille] gb|ABR89571.1| integrase/recombinase [Janthinobacterium sp. Marseille] Length = 301 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 228/295 (77%), Positives = 256/295 (86%) Query: 13 VSREAIDEFCDSLWLEDGLSKNTLDAYRRDMTLYAHWLYQERAKALYETQAEDLNAYFAA 72 +S+ IDEFCD+LWLEDGL+KN+L+AYRRD+ L+A WL QER K+L EDLN YF A Sbjct: 7 LSQSEIDEFCDTLWLEDGLAKNSLEAYRRDLRLFATWLQQERGKSLLAAHTEDLNGYFFA 66 Query: 73 RHDETKPSSSNRRLAVLKRFFQLALRQHHVTADPCLKLRSARQPQRLPKTMSEGQVEALL 132 +H TK +SSNRRLAVLKRF+QLALRQ+ + DPCL+LRSA+QP R+PKT+SE QVEALL Sbjct: 67 KHATTKATSSNRRLAVLKRFYQLALRQNKIKDDPCLRLRSAKQPPRMPKTLSEAQVEALL 126 Query: 133 AAPDVSTPLGLRDRAMIELMYASGLRVSELVTLKSIEVGMNEGVLRVTGKGSKTRLVPFG 192 AAPDV+TPLGLRDR M+ELMYASGLRV+ELV LKS+EVGMNEGVLRVTGKG KTRL+PFG Sbjct: 127 AAPDVNTPLGLRDRTMLELMYASGLRVTELVLLKSVEVGMNEGVLRVTGKGGKTRLIPFG 186 Query: 193 EEAGAWMARYLAEARSQILQGQIDDALFVTARGGPMTRQMFWTLIKKYALQAGITVRLSP 252 EEA AW+ RYL EAR IL GQ+DDALFVTARGG MTRQMFWTLIKK+A A I LSP Sbjct: 187 EEARAWIERYLKEARGAILNGQMDDALFVTARGGAMTRQMFWTLIKKHAAAADINAPLSP 246 Query: 253 HTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 307 HTLRHAFATHLLNHGADLRVVQLLLGH+DISTTQIYTHVARERLK+LH HHPRG Sbjct: 247 HTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKRLHQMHHPRG 301 >ref|YP_004754211.1| site-specific tyrosine recombinase [Collimonas fungivorans Ter331] gb|AEK63388.1| site-specific tyrosine recombinase [Collimonas fungivorans Ter331] Length = 312 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 237/312 (75%), Positives = 267/312 (85%), Gaps = 5/312 (1%) Query: 1 MGRTTPKIEA-PSVSRE---AIDEFCDSLWLEDGLSKNTLDAYRRDMTLYAHWLY-QERA 55 M R+ + EA P++S E AIDEFCD+LWLEDGL+KN+L+AYRRDMTL+A WL Q Sbjct: 1 MRRSKAQSEAKPALSAEHQTAIDEFCDNLWLEDGLAKNSLEAYRRDMTLFALWLQEQPDG 60 Query: 56 KALYETQAEDLNAYFAARHDETKPSSSNRRLAVLKRFFQLALRQHHVTADPCLKLRSARQ 115 K+L+ A DLNAYF ARHD +K +SSNRRLAVLKRF+ LALRQ+ ++ADPCL LRSA+Q Sbjct: 61 KSLFAVHAGDLNAYFLARHDSSKATSSNRRLAVLKRFYLLALRQNRISADPCLHLRSAKQ 120 Query: 116 PQRLPKTMSEGQVEALLAAPDVSTPLGLRDRAMIELMYASGLRVSELVTLKSIEVGMNEG 175 R PK +SE QVEALLAAPDV+TPLGLRDR M+ELMYASGLRVSELV LKS+EVGMNEG Sbjct: 121 APRFPKILSEIQVEALLAAPDVATPLGLRDRTMLELMYASGLRVSELVLLKSLEVGMNEG 180 Query: 176 VLRVTGKGSKTRLVPFGEEAGAWMARYLAEARSQILQGQIDDALFVTARGGPMTRQMFWT 235 VLR+TGKG+KTRL+PFGEEA W+ RYL +AR QI+ GQ+DDALFVTARGG MTRQMFWT Sbjct: 181 VLRITGKGNKTRLLPFGEEARNWIVRYLKDARGQIMNGQMDDALFVTARGGAMTRQMFWT 240 Query: 236 LIKKYALQAGITVRLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER 295 LIKKYA +A I LSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER Sbjct: 241 LIKKYAAKAAINAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER 300 Query: 296 LKQLHAAHHPRG 307 LK LHAAHHPRG Sbjct: 301 LKALHAAHHPRG 312 >ref|YP_001098767.1| site-specific tyrosine recombinase [Herminiimonas arsenicoxydans] emb|CAL60638.1| tyrosine recombinase XerD [Herminiimonas arsenicoxydans] Length = 309 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 227/294 (77%), Positives = 254/294 (86%) Query: 14 SREAIDEFCDSLWLEDGLSKNTLDAYRRDMTLYAHWLYQERAKALYETQAEDLNAYFAAR 73 S+ IDEFCD+LWLEDGL+KN+L+AYRRD+ L+A WL ER K L A+D+NAYF AR Sbjct: 16 SQAQIDEFCDTLWLEDGLAKNSLEAYRRDLRLFAVWLQAERGKTLLAAHADDVNAYFFAR 75 Query: 74 HDETKPSSSNRRLAVLKRFFQLALRQHHVTADPCLKLRSARQPQRLPKTMSEGQVEALLA 133 H+ TK +SSNRRLAVLKRF+QLALRQ+ ++ DPCLK+RSA+QP R+PKT+SE QVEALLA Sbjct: 76 HEVTKATSSNRRLAVLKRFYQLALRQNRISDDPCLKMRSAKQPLRIPKTLSEAQVEALLA 135 Query: 134 APDVSTPLGLRDRAMIELMYASGLRVSELVTLKSIEVGMNEGVLRVTGKGSKTRLVPFGE 193 APDV+TPLGLRDR M+ELMYASGLRV+ELV LKSIEVGMNEGVLR+TGKG KTRLVPFGE Sbjct: 136 APDVTTPLGLRDRTMLELMYASGLRVTELVLLKSIEVGMNEGVLRITGKGGKTRLVPFGE 195 Query: 194 EAGAWMARYLAEARSQILQGQIDDALFVTARGGPMTRQMFWTLIKKYALQAGITVRLSPH 253 EA W+ RYL EAR IL GQIDDALFVTARG MTRQMFWTLIKK+A A I LSPH Sbjct: 196 EARVWIERYLKEARPLILDGQIDDALFVTARGAAMTRQMFWTLIKKHAAAAEINAPLSPH 255 Query: 254 TLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 307 TLRHAFATHLLNHGADLRVVQ+LLGH+DISTTQIYTHVARERLK LH HHPRG Sbjct: 256 TLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKHLHQIHHPRG 309 >ref|ZP_08274277.1| site-specific tyrosine recombinase [Oxalobacteraceae bacterium IMCC9480] gb|EGF32250.1| site-specific tyrosine recombinase [Oxalobacteraceae bacterium IMCC9480] Length = 304 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 221/294 (75%), Positives = 253/294 (86%) Query: 14 SREAIDEFCDSLWLEDGLSKNTLDAYRRDMTLYAHWLYQERAKALYETQAEDLNAYFAAR 73 SR+ ID FCD+LWLEDGL+KN+L+AYRRD+T +A WL Q L D+NAYFAAR Sbjct: 11 SRQHIDTFCDTLWLEDGLAKNSLEAYRRDLTAFALWLAQASQTGLLAVTGADINAYFAAR 70 Query: 74 HDETKPSSSNRRLAVLKRFFQLALRQHHVTADPCLKLRSARQPQRLPKTMSEGQVEALLA 133 HD +K +++NRRLAVLKRF+QLALR ++ DPCLKL SA+QP R PKT+SE VEALLA Sbjct: 71 HDASKATTANRRLAVLKRFYQLALRNKQISDDPCLKLHSAKQPPRFPKTLSEANVEALLA 130 Query: 134 APDVSTPLGLRDRAMIELMYASGLRVSELVTLKSIEVGMNEGVLRVTGKGSKTRLVPFGE 193 APDVSTPLGLRDR M+ELMYASGLRV+ELV LKSIE+ +N+GV+RVTGKG+KTRLVPFGE Sbjct: 131 APDVSTPLGLRDRTMLELMYASGLRVTELVLLKSIELSLNDGVVRVTGKGNKTRLVPFGE 190 Query: 194 EAGAWMARYLAEARSQILQGQIDDALFVTARGGPMTRQMFWTLIKKYALQAGITVRLSPH 253 EA +W+ RYL EAR+QIL GQ+DDALFVTARGGPMTRQMFW ++KK A++A I LSPH Sbjct: 191 EARSWIERYLLEARAQILDGQMDDALFVTARGGPMTRQMFWVVVKKCAVRADIHAPLSPH 250 Query: 254 TLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 307 TLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLK LHAAHHPRG Sbjct: 251 TLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKVLHAAHHPRG 304