BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2535.p (426 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774272.1| TRAP-type C4-dicarboxylate transport system ... 652 0.0 ref|ZP_08274275.1| TRAP-type C4-dicarboxylate transport system, ... 604 e-170 ref|ZP_08504489.1| Large integral membrane transport protein [Me... 583 e-164 gb|EGW61597.1| TRAP dicarboxylate transporter, DctM subunit [Dec... 582 e-164 ref|YP_002795391.1| TRAP dicarboxylate transporter, DctM subunit... 580 e-163 >ref|YP_003774272.1| TRAP-type C4-dicarboxylate transport system large permease [Herbaspirillum seropedicae SmR1] gb|ADJ62364.1| TRAP-type C4-dicarboxylate transport system, large permease component protein [Herbaspirillum seropedicae SmR1] Length = 426 Score = 652 bits (1682), Expect = 0.0, Method: Composition-based stats. Identities = 420/426 (98%), Positives = 423/426 (99%) Query: 1 MNALIIFVLLFGLMLTGMPISISLGLTVLTFLFTMTDVPIQSVALKLFTGIEKFEIMAIP 60 MNALIIFVLLF LMLTGMPISISLGLTVLTFLFTMT+VPIQSVALKLFTGIEKFEIMAIP Sbjct: 1 MNALIIFVLLFALMLTGMPISISLGLTVLTFLFTMTEVPIQSVALKLFTGIEKFEIMAIP 60 Query: 61 FFILAGNFLTHGGVARRMINFATSMVGHWHGGLALAGVLACALFAAVSGSSPATVVAIGS 120 FFILAGNFLTHGGVARRMINFATSMVGHWHGGLALAGVLACALFAAVSGSSPATVVAIGS Sbjct: 61 FFILAGNFLTHGGVARRMINFATSMVGHWHGGLALAGVLACALFAAVSGSSPATVVAIGS 120 Query: 121 IILPAMVKQGFPNRFGAGVITTSGALGILIPPSIVMVMYSVSTNTSVGKLFMAGVVPGLL 180 IILPAMVKQGFPNRFGAGVITTSGALGILIPPSIVMVMYSVSTNTSVGKLFMAGVVPGLL Sbjct: 121 IILPAMVKQGFPNRFGAGVITTSGALGILIPPSIVMVMYSVSTNTSVGKLFMAGVVPGLL 180 Query: 181 LAFLLGLTTWFLARKNNYPRLKKATWAERAAAFRKSGWGLFLIVIVMGGIYTGVFTPTEA 240 LAFLLG+TTWFLARKNNYPRLKKATWAERAAAFRKSGWGLFLIVIVMGGIYTGVFTPTEA Sbjct: 181 LAFLLGVTTWFLARKNNYPRLKKATWAERAAAFRKSGWGLFLIVIVMGGIYTGVFTPTEA 240 Query: 241 AAMAAVYAFFIAVFVYKDLSLKQVPKVLLDSASMSAMLLYIITNAVLFSFLVTSENIPQT 300 AAMAAVYAFFIAVFVYKDL+LKQVPKVLLDSASMSAMLLYIITNAVLFSFLVTSENIPQ Sbjct: 241 AAMAAVYAFFIAVFVYKDLTLKQVPKVLLDSASMSAMLLYIITNAVLFSFLVTSENIPQA 300 Query: 301 MAAWITDSGLGPITFLLVVNILLLLAGNVMEPSSIVLILAPILFPVAMKLGIDPVHFGIL 360 MAAWITDSGLGPITFLLVVNILLLLAGNVMEPSSIVLILAPILFPVAMKLGIDPVHFGIL Sbjct: 301 MAAWITDSGLGPITFLLVVNILLLLAGNVMEPSSIVLILAPILFPVAMKLGIDPVHFGIL 360 Query: 361 IVVNMEVGMCHPPVGLNLYVASGITKMGITELTIAVMPWLLTMLGFLALVTYWPGLSLWL 420 IVVNMEVGMCHPPVGLNLYVASGITKMGITELTIAVMPWLLTMLGFLALVTYWP LSLWL Sbjct: 361 IVVNMEVGMCHPPVGLNLYVASGITKMGITELTIAVMPWLLTMLGFLALVTYWPALSLWL 420 Query: 421 PNLIYN 426 PNLIYN Sbjct: 421 PNLIYN 426 >ref|ZP_08274275.1| TRAP-type C4-dicarboxylate transport system, large permease component [Oxalobacteraceae bacterium IMCC9480] gb|EGF32248.1| TRAP-type C4-dicarboxylate transport system, large permease component [Oxalobacteraceae bacterium IMCC9480] Length = 426 Score = 604 bits (1557), Expect = e-170, Method: Composition-based stats. Identities = 385/426 (90%), Positives = 407/426 (95%) Query: 1 MNALIIFVLLFGLMLTGMPISISLGLTVLTFLFTMTDVPIQSVALKLFTGIEKFEIMAIP 60 MNALIIFVLLF LMLTGMPISISLGLTVLTFLFTMTDVPI+SVALKLFTGIEKFEIMAIP Sbjct: 1 MNALIIFVLLFVLMLTGMPISISLGLTVLTFLFTMTDVPIESVALKLFTGIEKFEIMAIP 60 Query: 61 FFILAGNFLTHGGVARRMINFATSMVGHWHGGLALAGVLACALFAAVSGSSPATVVAIGS 120 FFILAGNFLTHGGVARRMINFA+SMVGHWHGGLALAGV+ACALFAAVSGSSPATVVAIGS Sbjct: 61 FFILAGNFLTHGGVARRMINFASSMVGHWHGGLALAGVMACALFAAVSGSSPATVVAIGS 120 Query: 121 IILPAMVKQGFPNRFGAGVITTSGALGILIPPSIVMVMYSVSTNTSVGKLFMAGVVPGLL 180 IILPAMVKQG+P FGAGVITTSGALGILIPPSIVMVMYSVSTNTSVGKLFMAGV+PGL+ Sbjct: 121 IILPAMVKQGYPKSFGAGVITTSGALGILIPPSIVMVMYSVSTNTSVGKLFMAGVIPGLM 180 Query: 181 LAFLLGLTTWFLARKNNYPRLKKATWAERAAAFRKSGWGLFLIVIVMGGIYTGVFTPTEA 240 LAF LGLTTW+LARKNNYP+L KATWAER AFRKS WGL LIVIVMGGIY+G FTPTEA Sbjct: 181 LAFFLGLTTWYLARKNNYPKLPKATWAERGIAFRKSAWGLLLIVIVMGGIYSGKFTPTEA 240 Query: 241 AAMAAVYAFFIAVFVYKDLSLKQVPKVLLDSASMSAMLLYIITNAVLFSFLVTSENIPQT 300 AAMAAVYAF +AVFVYKD+S+KQVPKVLLDSA+MSAMLLYIITNAVLFSFL+TSENIPQ+ Sbjct: 241 AAMAAVYAFIVAVFVYKDMSMKQVPKVLLDSAAMSAMLLYIITNAVLFSFLITSENIPQS 300 Query: 301 MAAWITDSGLGPITFLLVVNILLLLAGNVMEPSSIVLILAPILFPVAMKLGIDPVHFGIL 360 MAA IT+ G+GPI FLLVVN+LLLLAGNVMEPSSIVLI+APILFPVAMKLGIDPVHFGIL Sbjct: 301 MAAVITNMGMGPIGFLLVVNVLLLLAGNVMEPSSIVLIMAPILFPVAMKLGIDPVHFGIL 360 Query: 361 IVVNMEVGMCHPPVGLNLYVASGITKMGITELTIAVMPWLLTMLGFLALVTYWPGLSLWL 420 I+VNMEVGMCHPPVGLNLYVASGITKMGITELT+AV PWLLTML FL LVTY P +SLWL Sbjct: 361 IIVNMEVGMCHPPVGLNLYVASGITKMGITELTVAVWPWLLTMLAFLGLVTYVPAISLWL 420 Query: 421 PNLIYN 426 PNLIYN Sbjct: 421 PNLIYN 426 >ref|ZP_08504489.1| Large integral membrane transport protein [Methyloversatilis universalis FAM5] gb|EGK72220.1| Large integral membrane transport protein [Methyloversatilis universalis FAM5] Length = 428 Score = 583 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 351/424 (82%), Positives = 390/424 (91%) Query: 1 MNALIIFVLLFGLMLTGMPISISLGLTVLTFLFTMTDVPIQSVALKLFTGIEKFEIMAIP 60 MNALIIF LLF LMLTGMPISISLGLTVLTFLFTMT VP++SVALKLFTGIEKFEIMAIP Sbjct: 1 MNALIIFTLLFVLMLTGMPISISLGLTVLTFLFTMTQVPLESVALKLFTGIEKFEIMAIP 60 Query: 61 FFILAGNFLTHGGVARRMINFATSMVGHWHGGLALAGVLACALFAAVSGSSPATVVAIGS 120 FFILAGNFLTHGGVA+RMINFATS+VGHW+GGL LAGVLACALFAAVSGSSPATVVAIGS Sbjct: 61 FFILAGNFLTHGGVAKRMINFATSLVGHWYGGLGLAGVLACALFAAVSGSSPATVVAIGS 120 Query: 121 IILPAMVKQGFPNRFGAGVITTSGALGILIPPSIVMVMYSVSTNTSVGKLFMAGVVPGLL 180 I+LPAMVK GFPNRFGAGVI+TSGALGILIPPSIVMVMYSV+TNTSVG LFMAGVVPGL Sbjct: 121 ILLPAMVKAGFPNRFGAGVISTSGALGILIPPSIVMVMYSVATNTSVGALFMAGVVPGLA 180 Query: 181 LAFLLGLTTWFLARKNNYPRLKKATWAERAAAFRKSGWGLFLIVIVMGGIYTGVFTPTEA 240 LA +LG TW+ AR+ +YPR KA+ A+R AFR S WGL LIV+VMGGIYTG+FTPTEA Sbjct: 181 LAGVLGFVTWYRARRFDYPRQPKASAAQRLKAFRDSVWGLLLIVVVMGGIYTGIFTPTEA 240 Query: 241 AAMAAVYAFFIAVFVYKDLSLKQVPKVLLDSASMSAMLLYIITNAVLFSFLVTSENIPQT 300 AAM+AVYAF +AVFVY+D+SL+ VP+VLL+SA+MSAMLLYIITNAVLFSF++T+ENIPQ Sbjct: 241 AAMSAVYAFIVAVFVYRDMSLRDVPRVLLNSANMSAMLLYIITNAVLFSFIMTNENIPQA 300 Query: 301 MAAWITDSGLGPITFLLVVNILLLLAGNVMEPSSIVLILAPILFPVAMKLGIDPVHFGIL 360 +A W+ GLGPI FLL VN++LLLAGNVMEPSSIVLI APILFPVA+KLGIDPVHFGI+ Sbjct: 301 LAEWMLGQGLGPIAFLLAVNVILLLAGNVMEPSSIVLIFAPILFPVAVKLGIDPVHFGIM 360 Query: 361 IVVNMEVGMCHPPVGLNLYVASGITKMGITELTIAVMPWLLTMLGFLALVTYWPGLSLWL 420 +VVNMEVGMCHPPVGLNLYVASGITKMGITELT+AV PWLL+MLGFL +VTYWP LSLWL Sbjct: 361 MVVNMEVGMCHPPVGLNLYVASGITKMGITELTVAVWPWLLSMLGFLVVVTYWPPLSLWL 420 Query: 421 PNLI 424 P ++ Sbjct: 421 PRML 424 >gb|EGW61597.1| TRAP dicarboxylate transporter, DctM subunit [Dechlorosoma suillum PS] Length = 427 Score = 582 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 360/421 (85%), Positives = 390/421 (92%) Query: 1 MNALIIFVLLFGLMLTGMPISISLGLTVLTFLFTMTDVPIQSVALKLFTGIEKFEIMAIP 60 MNA IIF LL LMLTGMPISISLGLTVLTFLFTMT VPI+SVALKLFTGIEKFEIMAIP Sbjct: 1 MNAAIIFGLLLALMLTGMPISISLGLTVLTFLFTMTQVPIESVALKLFTGIEKFEIMAIP 60 Query: 61 FFILAGNFLTHGGVARRMINFATSMVGHWHGGLALAGVLACALFAAVSGSSPATVVAIGS 120 FFILAGNFLTHGGVARRMINFA++MVGH++GGL LAGVLACALFAAVSGSSPATVVAIGS Sbjct: 61 FFILAGNFLTHGGVARRMINFASAMVGHFYGGLGLAGVLACALFAAVSGSSPATVVAIGS 120 Query: 121 IILPAMVKQGFPNRFGAGVITTSGALGILIPPSIVMVMYSVSTNTSVGKLFMAGVVPGLL 180 I+LPAMV+ GFPNRFGAGVITTSGALGILIPPSIVMVMYSV+TNTSVG LFMAGV+PGLL Sbjct: 121 ILLPAMVRAGFPNRFGAGVITTSGALGILIPPSIVMVMYSVATNTSVGALFMAGVIPGLL 180 Query: 181 LAFLLGLTTWFLARKNNYPRLKKATWAERAAAFRKSGWGLFLIVIVMGGIYTGVFTPTEA 240 LAF LG+ TW+ A+K +YPR+ KA+W ER AFRKS WGL LIVIVMGGIYTG+FTPTEA Sbjct: 181 LAFTLGMVTWYRAKKFDYPRMPKASWGERWVAFRKSVWGLMLIVIVMGGIYTGMFTPTEA 240 Query: 241 AAMAAVYAFFIAVFVYKDLSLKQVPKVLLDSASMSAMLLYIITNAVLFSFLVTSENIPQT 300 AAM+AVYAF +AVFVYKD+ LKQ+PKVLLDSA+MSAMLLYIITNAVLFSFL+T+ENIPQ Sbjct: 241 AAMSAVYAFIVAVFVYKDMGLKQIPKVLLDSANMSAMLLYIITNAVLFSFLMTNENIPQL 300 Query: 301 MAAWITDSGLGPITFLLVVNILLLLAGNVMEPSSIVLILAPILFPVAMKLGIDPVHFGIL 360 +A W+ D GLGPI FLL VN+LLL+AGN MEPSSIVLI+APILFPVA+KLGIDPVHFGIL Sbjct: 301 LAEWLLDKGLGPIAFLLAVNVLLLVAGNFMEPSSIVLIMAPILFPVAVKLGIDPVHFGIL 360 Query: 361 IVVNMEVGMCHPPVGLNLYVASGITKMGITELTIAVMPWLLTMLGFLALVTYWPGLSLWL 420 IVVNMEVGMCHPPVGLNLYVASGITKMGITELTIAV PWLL+ML FL LVTYWP LSLWL Sbjct: 361 IVVNMEVGMCHPPVGLNLYVASGITKMGITELTIAVWPWLLSMLCFLGLVTYWPTLSLWL 420 Query: 421 P 421 P Sbjct: 421 P 421 >ref|YP_002795391.1| TRAP dicarboxylate transporter, DctM subunit precursor [Laribacter hongkongensis HLHK9] gb|ACO74382.1| TRAP dicarboxylate transporter, DctM subunit precursor [Laribacter hongkongensis HLHK9] Length = 427 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 359/421 (85%), Positives = 392/421 (93%) Query: 1 MNALIIFVLLFGLMLTGMPISISLGLTVLTFLFTMTDVPIQSVALKLFTGIEKFEIMAIP 60 M+ALIIF LL LMLTGMPISISLGLTVLTFLFTMTDVPI SVALKLFTGIEKFEIMAIP Sbjct: 1 MSALIIFGLLVLLMLTGMPISISLGLTVLTFLFTMTDVPIASVALKLFTGIEKFEIMAIP 60 Query: 61 FFILAGNFLTHGGVARRMINFATSMVGHWHGGLALAGVLACALFAAVSGSSPATVVAIGS 120 FFILAGNFLTHGGVARRMINFAT+MVGHWHGGL LAGV+ACALFAAVSGSSPATVVAIGS Sbjct: 61 FFILAGNFLTHGGVARRMINFATAMVGHWHGGLGLAGVMACALFAAVSGSSPATVVAIGS 120 Query: 121 IILPAMVKQGFPNRFGAGVITTSGALGILIPPSIVMVMYSVSTNTSVGKLFMAGVVPGLL 180 I+LPAM+KQGFP+RFGAGVITTSGALGILIPPSIVMVMYSV+TNTSVG+LFMAGV+PGL+ Sbjct: 121 ILLPAMIKQGFPDRFGAGVITTSGALGILIPPSIVMVMYSVATNTSVGQLFMAGVIPGLM 180 Query: 181 LAFLLGLTTWFLARKNNYPRLKKATWAERAAAFRKSGWGLFLIVIVMGGIYTGVFTPTEA 240 LA LG TTW+ ARKNNYPR+ KA++ ER AFR+S WGL LIV+V+GGIYTG+FTPTEA Sbjct: 181 LAGFLGFTTWWRARKNNYPRMPKASFMERWKAFRESVWGLLLIVVVIGGIYTGIFTPTEA 240 Query: 241 AAMAAVYAFFIAVFVYKDLSLKQVPKVLLDSASMSAMLLYIITNAVLFSFLVTSENIPQT 300 AAM+AVYAF +AVFVYKD++L+Q+PK+LLDSA+MSAMLLYIITNAVLFSFL+TSE IPQT Sbjct: 241 AAMSAVYAFLVAVFVYKDMNLRQIPKILLDSANMSAMLLYIITNAVLFSFLMTSEQIPQT 300 Query: 301 MAAWITDSGLGPITFLLVVNILLLLAGNVMEPSSIVLILAPILFPVAMKLGIDPVHFGIL 360 MA W+ G+GPI FLL+VN+LLLLAGNVMEPSSIVLI APILFP+AM LGIDPVHFGIL Sbjct: 301 MAEWMVGQGMGPILFLLMVNVLLLLAGNVMEPSSIVLIFAPILFPMAMHLGIDPVHFGIL 360 Query: 361 IVVNMEVGMCHPPVGLNLYVASGITKMGITELTIAVMPWLLTMLGFLALVTYWPGLSLWL 420 IVVNMEVGMCHPPVGLNLYVASGITKMGITELT AV PWLLTML FLALVTY P +SLWL Sbjct: 361 IVVNMEVGMCHPPVGLNLYVASGITKMGITELTKAVWPWLLTMLVFLALVTYVPAISLWL 420 Query: 421 P 421 P Sbjct: 421 P 421