BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2534.p (186 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774271.1| TRAP-type C4-dicarboxylate transport system ... 363 6e-99 ref|ZP_08274274.1| TRAP-type C4-dicarboxylate transport system, ... 303 6e-81 gb|EGD04876.1| putative TrapT family C4-dicarboxylate transporte... 265 2e-69 ref|ZP_03582498.1| trap-type c4-dicarboxylate transport system, ... 264 4e-69 ref|YP_001583656.1| tripartite ATP-independent periplasmic trans... 264 5e-69 >ref|YP_003774271.1| TRAP-type C4-dicarboxylate transport system small permease [Herbaspirillum seropedicae SmR1] gb|ADJ62363.1| TRAP-type C4-dicarboxylate transport system, small permease component [Herbaspirillum seropedicae SmR1] Length = 186 Score = 363 bits (932), Expect = 6e-99, Method: Composition-based stats. Identities = 183/186 (98%), Positives = 186/186 (100%) Query: 1 MKLLDHLEEWLIAFLMAAATFIIFVAVVHRYASGLDIPWLQDQLIQINMSWAQELCIFMF 60 MKLLDHLEEWLIAFLMAAATFIIFVAVVHRYASGLDIPWLQDQLIQINMSWAQELCIFMF Sbjct: 1 MKLLDHLEEWLIAFLMAAATFIIFVAVVHRYASGLDIPWLQDQLIQINMSWAQELCIFMF 60 Query: 61 VWMAKFGAAYGVRTGIHVGVDVLINRMNTPWRNKFVLFGLFAGALFTGIVGTFGAEFVYD 120 VWMAKFGAAYGVRTGIHVGVDVLINR+NTPWRNKFVLFGLFAGALFTGIVGTFGAEFVYD Sbjct: 61 VWMAKFGAAYGVRTGIHVGVDVLINRLNTPWRNKFVLFGLFAGALFTGIVGTFGAEFVYD 120 Query: 121 IAQHDSTSEVLELPMWIVYLAVPLGSYLMCFRFLQVAWNFHRTGELPKHDHAHVEGLDEE 180 IAQHDSTSEV+E+PMWIVYLAVPLGSYLMCFRFLQVAWNFHRTGELPKHDHAHVEGLDEE Sbjct: 121 IAQHDSTSEVMEVPMWIVYLAVPLGSYLMCFRFLQVAWNFHRTGELPKHDHAHVEGLDEE 180 Query: 181 TSGGKA 186 TSGGKA Sbjct: 181 TSGGKA 186 >ref|ZP_08274274.1| TRAP-type C4-dicarboxylate transport system, small permease component [Oxalobacteraceae bacterium IMCC9480] gb|EGF32247.1| TRAP-type C4-dicarboxylate transport system, small permease component [Oxalobacteraceae bacterium IMCC9480] Length = 186 Score = 303 bits (777), Expect = 6e-81, Method: Composition-based stats. Identities = 152/186 (81%), Positives = 166/186 (89%) Query: 1 MKLLDHLEEWLIAFLMAAATFIIFVAVVHRYASGLDIPWLQDQLIQINMSWAQELCIFMF 60 MKLLDHLEEWLIA LMA+AT IIFVAVVHRY SGL IP++QD LI +N SWAQELCI++F Sbjct: 1 MKLLDHLEEWLIAALMASATVIIFVAVVHRYLSGLPIPYMQDYLISLNTSWAQELCIYLF 60 Query: 61 VWMAKFGAAYGVRTGIHVGVDVLINRMNTPWRNKFVLFGLFAGALFTGIVGTFGAEFVYD 120 VWMAKFGAAYGVRTGIHVGVDVLIN++NTPWRNKFV+FGL AGA FT IVGT GA FVY Sbjct: 61 VWMAKFGAAYGVRTGIHVGVDVLINQLNTPWRNKFVVFGLLAGATFTAIVGTLGASFVYQ 120 Query: 121 IAQHDSTSEVLELPMWIVYLAVPLGSYLMCFRFLQVAWNFHRTGELPKHDHAHVEGLDEE 180 IAQH STSEV+E+PMWIVYLAVPLGSYLM FRFLQV W F +TGELPKHDH+ VEGLDEE Sbjct: 121 IAQHSSTSEVMEVPMWIVYLAVPLGSYLMSFRFLQVTWAFIKTGELPKHDHSFVEGLDEE 180 Query: 181 TSGGKA 186 +GGKA Sbjct: 181 VAGGKA 186 >gb|EGD04876.1| putative TrapT family C4-dicarboxylate transporter DctQ [Burkholderia sp. TJI49] Length = 192 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 129/178 (72%), Positives = 150/178 (84%) Query: 1 MKLLDHLEEWLIAFLMAAATFIIFVAVVHRYASGLDIPWLQDQLIQINMSWAQELCIFMF 60 MKLLD LEEWLIA LM AAT +IFVAV+HRYASG+ IP+LQD L+ +++SWAQELCI++F Sbjct: 1 MKLLDRLEEWLIATLMGAATLVIFVAVMHRYASGVAIPYLQDWLLALDLSWAQELCIYLF 60 Query: 61 VWMAKFGAAYGVRTGIHVGVDVLINRMNTPWRNKFVLFGLFAGALFTGIVGTFGAEFVYD 120 VWMAKFGAAYGVRTGIHVGVDV+INR+ P R ++FGL AGALFTG+VGT GA FV+ Sbjct: 61 VWMAKFGAAYGVRTGIHVGVDVMINRLQPPARRVCIVFGLLAGALFTGVVGTLGARFVWA 120 Query: 121 IAQHDSTSEVLELPMWIVYLAVPLGSYLMCFRFLQVAWNFHRTGELPKHDHAHVEGLD 178 +AQ D S LELP WIV+L VPLGSYLMCFRFLQ+A F R+GELPKHDHA V+GLD Sbjct: 121 LAQTDQVSPDLELPRWIVFLCVPLGSYLMCFRFLQIALRFLRSGELPKHDHAQVDGLD 178 >ref|ZP_03582498.1| trap-type c4-dicarboxylate transport system, small permease component [Burkholderia multivorans CGD1] gb|EEE02671.1| trap-type c4-dicarboxylate transport system, small permease component [Burkholderia multivorans CGD1] Length = 192 Score = 264 bits (675), Expect = 4e-69, Method: Composition-based stats. Identities = 129/178 (72%), Positives = 150/178 (84%) Query: 1 MKLLDHLEEWLIAFLMAAATFIIFVAVVHRYASGLDIPWLQDQLIQINMSWAQELCIFMF 60 MKLLD LEEWLIA LM AT +IFVAV+HRYASG+ IP+LQD L+ +++SWAQELCI++F Sbjct: 1 MKLLDRLEEWLIATLMGVATLVIFVAVMHRYASGIAIPYLQDWLLALDLSWAQELCIYLF 60 Query: 61 VWMAKFGAAYGVRTGIHVGVDVLINRMNTPWRNKFVLFGLFAGALFTGIVGTFGAEFVYD 120 VWMAKFGAAYGVRTGIHVGVDV+INR+ P R ++FGL AGALFTG+VGT GA FV+ Sbjct: 61 VWMAKFGAAYGVRTGIHVGVDVMINRLQPPARRVCIVFGLLAGALFTGVVGTLGARFVWA 120 Query: 121 IAQHDSTSEVLELPMWIVYLAVPLGSYLMCFRFLQVAWNFHRTGELPKHDHAHVEGLD 178 +AQ D S LELP WIV+L VPLGSYLMCFRFLQVA +F R+GELPKHDHA V+GLD Sbjct: 121 LAQTDQVSPDLELPRWIVFLCVPLGSYLMCFRFLQVALHFLRSGELPKHDHAQVDGLD 178 >ref|YP_001583656.1| tripartite ATP-independent periplasmic transporter DctQ [Burkholderia multivorans ATCC 17616] ref|YP_001949220.1| putative TrapT family C4-dicarboxylate transporter DctQ [Burkholderia multivorans ATCC 17616] gb|ABX17364.1| Tripartite ATP-independent periplasmic transporter DctQ component [Burkholderia multivorans ATCC 17616] dbj|BAG46684.1| putative TrapT family C4-dicarboxylate transporter DctQ [Burkholderia multivorans ATCC 17616] Length = 192 Score = 264 bits (674), Expect = 5e-69, Method: Composition-based stats. Identities = 129/178 (72%), Positives = 150/178 (84%) Query: 1 MKLLDHLEEWLIAFLMAAATFIIFVAVVHRYASGLDIPWLQDQLIQINMSWAQELCIFMF 60 MKLLD LEEWLIA LM AT +IFVAV+HRYASG+ IP+LQD L+ +++SWAQELCI++F Sbjct: 1 MKLLDRLEEWLIATLMGVATLVIFVAVMHRYASGIAIPYLQDWLLALDLSWAQELCIYLF 60 Query: 61 VWMAKFGAAYGVRTGIHVGVDVLINRMNTPWRNKFVLFGLFAGALFTGIVGTFGAEFVYD 120 VWMAKFGAAYGVRTGIHVGVDV+INR+ P R ++FGL AGALFTG+VGT GA FV+ Sbjct: 61 VWMAKFGAAYGVRTGIHVGVDVMINRLQPPARRVCIVFGLLAGALFTGVVGTLGARFVWA 120 Query: 121 IAQHDSTSEVLELPMWIVYLAVPLGSYLMCFRFLQVAWNFHRTGELPKHDHAHVEGLD 178 +AQ D S LELP WIV+L VPLGSYLMCFRFLQVA +F R+GELPKHDHA V+GLD Sbjct: 121 LAQTDQVSPDLELPRWIVFLCVPLGSYLMCFRFLQVALHFLRSGELPKHDHAQVDGLD 178