BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2533.p (338 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774270.1| TRAP-type C4-dicarboxylate transport system ... 608 e-172 ref|ZP_08274273.1| TRAP-type C4-dicarboxylate transport system, ... 536 e-150 ref|YP_003776197.1| TRAP-type C4-dicarboxylate-binding periplasm... 488 e-136 ref|YP_420258.1| TRAP-type C4-dicarboxylate transport system [Ma... 471 e-131 ref|ZP_00056052.2| COG1638: TRAP-type C4-dicarboxylate transport... 469 e-130 >ref|YP_003774270.1| TRAP-type C4-dicarboxylate transport system periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ62362.1| TRAP-type C4-dicarboxylate transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 334 Score = 608 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 318/338 (94%), Positives = 329/338 (97%), Gaps = 4/338 (1%) Query: 1 MKLKSIVFALAAATVVNAGLVASAFAQQPIIIKFSHVVANDTPKGKAAERFKELAEKATK 60 MKLKSI+ A+ AA +V+ +AFAQQPI+IKFSHVVANDTPKGKAAERFKELAEKATK Sbjct: 1 MKLKSILLAMTAAAIVST----NAFAQQPIVIKFSHVVANDTPKGKAAERFKELAEKATK 56 Query: 61 GRVKVEVYPNSTLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPSKDV 120 GRVK+EVYPNSTLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFP+K+V Sbjct: 57 GRVKIEVYPNSTLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPTKEV 116 Query: 121 LYRVTEGPIGKDLFKKLEPKGITGLAYWDNGFKVMSANKPLHQPSDFRGLKMRIQSSKVL 180 LYRVTEGPIGKDLFKKLEPKGITGLAYWDNGFKVMSANKPLH P+DFRGLKMRIQSSKVL Sbjct: 117 LYRVTEGPIGKDLFKKLEPKGITGLAYWDNGFKVMSANKPLHHPADFRGLKMRIQSSKVL 176 Query: 181 DAQMRALGANPQVLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQKHVTVSNHGYLGY 240 DAQMRALGANPQVLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQKHVTVSNHGYLGY Sbjct: 177 DAQMRALGANPQVLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQKHVTVSNHGYLGY 236 Query: 241 AVIVNKKFWDGLPSDVRTQLEGAMKDATKYANAIAQQENDAALAAVEKTGKTTVYRLTDA 300 AVIVNKKFWDGLPSD+RTQLEGAMKDATKYANAIAQQENDAALAAVEKTGKTTVYRLTDA Sbjct: 237 AVIVNKKFWDGLPSDIRTQLEGAMKDATKYANAIAQQENDAALAAVEKTGKTTVYRLTDA 296 Query: 301 EKAEWRKALLPVQQQMASRIGKDLIDAVNKESAALGQK 338 EKAEWRKALLPVQQQMASRIGKDLIDAVNKESAALGQK Sbjct: 297 EKAEWRKALLPVQQQMASRIGKDLIDAVNKESAALGQK 334 >ref|ZP_08274273.1| TRAP-type C4-dicarboxylate transport system, periplasmic component [Oxalobacteraceae bacterium IMCC9480] gb|EGF32246.1| TRAP-type C4-dicarboxylate transport system, periplasmic component [Oxalobacteraceae bacterium IMCC9480] Length = 337 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 279/331 (84%), Positives = 298/331 (90%), Gaps = 4/331 (1%) Query: 8 FALAAATVVNAGLVASAFAQQPIIIKFSHVVANDTPKGKAAERFKELAEKATKGRVKVEV 67 A++AA +++ +A AQ PI+IKFSHVVANDTPKGKAAERFKEL EK KGRVKVE+ Sbjct: 11 LAMSAALLMSG----NAMAQTPIVIKFSHVVANDTPKGKAAERFKELVEKNLKGRVKVEL 66 Query: 68 YPNSTLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPSKDVLYRVTEG 127 YPNSTLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFE+FDLPYIFP KDVLYRVTEG Sbjct: 67 YPNSTLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFELFDLPYIFPGKDVLYRVTEG 126 Query: 128 PIGKDLFKKLEPKGITGLAYWDNGFKVMSANKPLHQPSDFRGLKMRIQSSKVLDAQMRAL 187 PIGKDLFKKLE KGITGLAYWDNGFKVMSANKPL P+DF+GLKMRIQSSKVLDA+MRAL Sbjct: 127 PIGKDLFKKLESKGITGLAYWDNGFKVMSANKPLKTPADFKGLKMRIQSSKVLDAEMRAL 186 Query: 188 GANPQVLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQKHVTVSNHGYLGYAVIVNKK 247 GANPQVLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQ +VTVSNHGYLGYAVIVNKK Sbjct: 187 GANPQVLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQSNVTVSNHGYLGYAVIVNKK 246 Query: 248 FWDGLPSDVRTQLEGAMKDATKYANAIAQQENDAALAAVEKTGKTTVYRLTDAEKAEWRK 307 FWDGLP+D+RT LE AMKDATKYANAIAQQEND A+ AV K+GKT VY L D EKAEWRK Sbjct: 247 FWDGLPADIRTGLEAAMKDATKYANAIAQQENDKAMEAVRKSGKTEVYVLNDKEKAEWRK 306 Query: 308 ALLPVQQQMASRIGKDLIDAVNKESAALGQK 338 ALLPVQ+ M SRIGKDLI AV KE+ LG K Sbjct: 307 ALLPVQKDMESRIGKDLITAVGKEATTLGYK 337 >ref|YP_003776197.1| TRAP-type C4-dicarboxylate-binding periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ64289.1| TRAP-type C4-dicarboxylate-binding periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 344 Score = 488 bits (1255), Expect = e-136, Method: Composition-based stats. Identities = 255/334 (76%), Positives = 287/334 (85%), Gaps = 4/334 (1%) Query: 9 ALAAATVVNAGLVASAF----AQQPIIIKFSHVVANDTPKGKAAERFKELAEKATKGRVK 64 ALAA V GL A QQPIIIKFSHVVANDTPKGK AERFKELAEKAT+GRVK Sbjct: 9 ALAACAFVTLGLPQPAALAQQPQQPIIIKFSHVVANDTPKGKGAERFKELAEKATQGRVK 68 Query: 65 VEVYPNSTLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPSKDVLYRV 124 VEVYPNSTLYKDKEELEALQLG+VQMLAPSLAKFGPLG +EFEVFDLPYIFP K VL RV Sbjct: 69 VEVYPNSTLYKDKEELEALQLGSVQMLAPSLAKFGPLGAREFEVFDLPYIFPDKAVLKRV 128 Query: 125 TEGPIGKDLFKKLEPKGITGLAYWDNGFKVMSANKPLHQPSDFRGLKMRIQSSKVLDAQM 184 TEGPIG+ LF+KLE KGI GLAYWDNG KVM+AN+PLH+ +DFR LKMRIQSSKVLD Q Sbjct: 129 TEGPIGQGLFQKLEGKGIKGLAYWDNGMKVMTANRPLHKVADFRALKMRIQSSKVLDEQF 188 Query: 185 RALGANPQVLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQKHVTVSNHGYLGYAVIV 244 RAL ANPQVLAFSEVYQA+QTGVVDG+EN PSN+YTQKMHEVQ ++TVS+HGY+GYAVIV Sbjct: 189 RALKANPQVLAFSEVYQAMQTGVVDGSENTPSNVYTQKMHEVQSNLTVSDHGYIGYAVIV 248 Query: 245 NKKFWDGLPSDVRTQLEGAMKDATKYANAIAQQENDAALAAVEKTGKTTVYRLTDAEKAE 304 NKKFW+ LP+D+R+QLE AMK AT YAN IAQ+END ALAA++ +GKT VY L++ EKAE Sbjct: 249 NKKFWEALPADIRSQLEAAMKQATLYANTIAQKENDDALAAIKASGKTRVYTLSEQEKAE 308 Query: 305 WRKALLPVQQQMASRIGKDLIDAVNKESAALGQK 338 WR+ALLPV + MA+R+G DLI+A+ KES A G K Sbjct: 309 WRRALLPVHKSMAARVGADLIEAIYKESEAAGVK 342 >ref|YP_420258.1| TRAP-type C4-dicarboxylate transport system [Magnetospirillum magneticum AMB-1] dbj|BAE49699.1| TRAP-type C4-dicarboxylate transport system [Magnetospirillum magneticum AMB-1] Length = 337 Score = 471 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 248/340 (72%), Positives = 282/340 (82%), Gaps = 6/340 (1%) Query: 1 MKLKSIVFALAAATVVNAGLVASAFAQQ--PIIIKFSHVVANDTPKGKAAERFKELAEKA 58 MKL +++ AA V L SA AQQ PI+IKFSHVVA DTPKGK AE FK+LAE+ Sbjct: 1 MKLGTLIAGAIAACV----LAGSAMAQQAQPIVIKFSHVVAPDTPKGKGAEYFKKLAEER 56 Query: 59 TKGRVKVEVYPNSTLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPSK 118 TKGRVKVEVYPNS LYKDKEE+EALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPSK Sbjct: 57 TKGRVKVEVYPNSQLYKDKEEMEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPSK 116 Query: 119 DVLYRVTEGPIGKDLFKKLEPKGITGLAYWDNGFKVMSANKPLHQPSDFRGLKMRIQSSK 178 DVL VT GP+G L KKLE KGI GLAYWDNGFK+MSANKP+ PSD +G+KMRIQSSK Sbjct: 117 DVLRSVTGGPVGASLLKKLEGKGIIGLAYWDNGFKIMSANKPIKAPSDLKGVKMRIQSSK 176 Query: 179 VLDAQMRALGANPQVLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQKHVTVSNHGYL 238 VLDA+MRALGA PQV+AFSEVYQALQTGVVDGTENPPSN+YTQKMHEVQKH T++NHGYL Sbjct: 177 VLDAEMRALGALPQVMAFSEVYQALQTGVVDGTENPPSNMYTQKMHEVQKHATMTNHGYL 236 Query: 239 GYAVIVNKKFWDGLPSDVRTQLEGAMKDATKYANAIAQQENDAALAAVEKTGKTTVYRLT 298 GYAVIVNKKFW+GLP+D+R LEGAM +A+ +ANAIAQ END A+ A++ +GKT + + Sbjct: 237 GYAVIVNKKFWEGLPADIRATLEGAMSEASVFANAIAQTENDDAVKAMKASGKTEFHDPS 296 Query: 299 DAEKAEWRKALLPVQQQMASRIGKDLIDAVNKESAALGQK 338 AE WRKALLPV + M R+GKDLI++ KE+A G K Sbjct: 297 AAEIEAWRKALLPVHKDMEGRVGKDLIESFYKEAAKFGFK 336 >ref|ZP_00056052.2| COG1638: TRAP-type C4-dicarboxylate transport system, periplasmic component [Magnetospirillum magnetotacticum MS-1] Length = 337 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 241/336 (71%), Positives = 275/336 (81%), Gaps = 2/336 (0%) Query: 1 MKLKSIVFALAAATVVNAGLVASAFAQQPIIIKFSHVVANDTPKGKAAERFKELAEKATK 60 MK ++V + A V++ G A A QPI+IKFSHVVA DTPKGKAAE FK+LAE+ TK Sbjct: 1 MKFGTLVAGIVAVCVLSCG--AMAQQAQPIVIKFSHVVAPDTPKGKAAEYFKKLAEERTK 58 Query: 61 GRVKVEVYPNSTLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPSKDV 120 GRVKVEV+PNS LYKDKEELEALQLGA QMLAPSLAKFGPLG+KEFEVFDLPYIFPSKDV Sbjct: 59 GRVKVEVFPNSMLYKDKEELEALQLGAAQMLAPSLAKFGPLGIKEFEVFDLPYIFPSKDV 118 Query: 121 LYRVTEGPIGKDLFKKLEPKGITGLAYWDNGFKVMSANKPLHQPSDFRGLKMRIQSSKVL 180 L VT GP+G L KKLE KGI GLAYWDNGFK++SANKPL P+D +GLKMRIQSSKVL Sbjct: 119 LRAVTGGPVGASLLKKLETKGIIGLAYWDNGFKILSANKPLISPADLKGLKMRIQSSKVL 178 Query: 181 DAQMRALGANPQVLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQKHVTVSNHGYLGY 240 DA+MRAL A PQ +AFSEVYQAL TGVV+GTENPPSN+YTQKMHEVQKH T++NHGYLGY Sbjct: 179 DAEMRALNAQPQPIAFSEVYQALLTGVVNGTENPPSNMYTQKMHEVQKHATLTNHGYLGY 238 Query: 241 AVIVNKKFWDGLPSDVRTQLEGAMKDATKYANAIAQQENDAALAAVEKTGKTTVYRLTDA 300 AVIVNKKFWD LPSD+R LEGAM +AT YANAIAQ END AL A++ +GKT + T A Sbjct: 239 AVIVNKKFWDSLPSDIRAILEGAMSEATVYANAIAQAENDDALKAMKASGKTEFHDPTPA 298 Query: 301 EKAEWRKALLPVQQQMASRIGKDLIDAVNKESAALG 336 E WRK LLPV + M +R+GKDLI++ +E+ G Sbjct: 299 ELEVWRKTLLPVHRDMENRVGKDLIESFYREAIKFG 334