BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2531.p (196 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774268.1| C4-dicarboxylate transport transcription reg... 340 5e-92 ref|YP_001098760.1| putative C4-dicarboxylate transport transcri... 272 2e-71 ref|YP_001352157.1| two-components system response regulator [Ja... 271 4e-71 ref|ZP_08274271.1| putative C4-dicarboxylate transport transcrip... 257 7e-67 gb|EGW61604.1| two component transcriptional regulator, LuxR fam... 217 7e-55 >ref|YP_003774268.1| C4-dicarboxylate transport transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62360.1| C4-dicarboxylate transport transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 196 Score = 340 bits (873), Expect = 5e-92, Method: Composition-based stats. Identities = 182/196 (92%), Positives = 186/196 (94%) Query: 1 MLHIVDDEEIIRDSLTWLARSRNIAAIGYESGAAVLGALAHASGIDAEGECLLLDVRMPG 60 MLHIVDDEEIIRDSL WLARSRNIAA Y+SG +L ALA + GIDAEGECLLLDVRMPG Sbjct: 1 MLHIVDDEEIIRDSLAWLARSRNIAATAYDSGPTLLAALAASPGIDAEGECLLLDVRMPG 60 Query: 61 TSGVALFNELKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLE 120 TSGVALFN+LKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLE Sbjct: 61 TSGVALFNDLKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLE 120 Query: 121 ALESSRAGGAEDAVQSRLAALSAREREVLDLILAGKMNKVIADELGISMRTVEVHRAHIF 180 AL SSRAGGAEDAVQSRLAALS REREVLDLILAGKMNKVIADELGISMRTVEVHRAHIF Sbjct: 121 ALASSRAGGAEDAVQSRLAALSVREREVLDLILAGKMNKVIADELGISMRTVEVHRAHIF 180 Query: 181 DKMNVKTAVELARLLK 196 DKMNVKTAVELARLLK Sbjct: 181 DKMNVKTAVELARLLK 196 >ref|YP_001098760.1| putative C4-dicarboxylate transport transcriptional regulatory protein dctR [Herminiimonas arsenicoxydans] emb|CAL60631.1| C4-dicarboxylate transport transcriptional regulatory protein DctR [Herminiimonas arsenicoxydans] Length = 196 Score = 272 bits (695), Expect = 2e-71, Method: Composition-based stats. Identities = 141/196 (71%), Positives = 159/196 (81%) Query: 1 MLHIVDDEEIIRDSLTWLARSRNIAAIGYESGAAVLGALAHASGIDAEGECLLLDVRMPG 60 MLHI+DDEE+IRDSL WLA+SR I A+ Y+SG A L L S +G+C+LLDVRMP Sbjct: 1 MLHIIDDEEVIRDSLMWLAKSRGIPAVAYDSGKAFLATLDSISRTTPQGQCVLLDVRMPD 60 Query: 61 TSGVALFNELKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLE 120 SG+ALF+ L ++ + PVIFLTGHGDVPMAVD LK GAFDFFEKPFNDN+LMDRV E Sbjct: 61 VSGIALFDLLSSRSMTQLFPVIFLTGHGDVPMAVDTLKRGAFDFFEKPFNDNKLMDRVQE 120 Query: 121 ALESSRAGGAEDAVQSRLAALSAREREVLDLILAGKMNKVIADELGISMRTVEVHRAHIF 180 AL +S A A+ +RLAALS REREVLDLIL GKMNKVIAD+LGISMRTVEVHRAHIF Sbjct: 121 ALSASEQASASVAIHTRLAALSGREREVLDLILEGKMNKVIADKLGISMRTVEVHRAHIF 180 Query: 181 DKMNVKTAVELARLLK 196 DKMNVKTAVELARLLK Sbjct: 181 DKMNVKTAVELARLLK 196 >ref|YP_001352157.1| two-components system response regulator [Janthinobacterium sp. Marseille] gb|ABR89928.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 197 Score = 271 bits (693), Expect = 4e-71, Method: Composition-based stats. Identities = 143/197 (72%), Positives = 158/197 (80%), Gaps = 1/197 (0%) Query: 1 MLHIVDDEEIIRDSLTWLARSRNIAAIGYESGAAVLGAL-AHASGIDAEGECLLLDVRMP 59 MLHI+DDEE+IRDSL WLA+SR I A Y+SG A L L +G+C+LLDVRMP Sbjct: 1 MLHIIDDEEVIRDSLMWLAKSRGIPATAYDSGKAFLTTLDTMPRATSPQGQCILLDVRMP 60 Query: 60 GTSGVALFNELKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVL 119 SGVALF+ L ++GL PVIFLTGHGDVPMAVD LK GAFDFFEKPFNDN+LMDR+ Sbjct: 61 EVSGVALFDLLTSRGLTQTFPVIFLTGHGDVPMAVDTLKRGAFDFFEKPFNDNKLMDRIQ 120 Query: 120 EALESSRAGGAEDAVQSRLAALSAREREVLDLILAGKMNKVIADELGISMRTVEVHRAHI 179 EAL SS A A+ +RLAALS REREVLDLIL GKMNKVIAD+LGISMRTVEVHRAHI Sbjct: 121 EALASSEHASASVAIHTRLAALSGREREVLDLILEGKMNKVIADKLGISMRTVEVHRAHI 180 Query: 180 FDKMNVKTAVELARLLK 196 FDKMNVKTAVELARLLK Sbjct: 181 FDKMNVKTAVELARLLK 197 >ref|ZP_08274271.1| putative C4-dicarboxylate transport transcriptional regulatory protein dctR [Oxalobacteraceae bacterium IMCC9480] gb|EGF32244.1| putative C4-dicarboxylate transport transcriptional regulatory protein dctR [Oxalobacteraceae bacterium IMCC9480] Length = 195 Score = 257 bits (656), Expect = 7e-67, Method: Composition-based stats. Identities = 141/196 (71%), Positives = 156/196 (79%), Gaps = 1/196 (0%) Query: 1 MLHIVDDEEIIRDSLTWLARSRNIAAIGYESGAAVLGALAHASGIDAEGECLLLDVRMPG 60 MLHIVDDEE IRDSL+WLARSR IAA Y+ A L L + D G+C+LLD+RMP Sbjct: 1 MLHIVDDEEAIRDSLSWLARSRGIAAKAYDGADAFLATLDQVA-FDPAGDCVLLDIRMPD 59 Query: 61 TSGVALFNELKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLE 120 TSG LF+ + + L R PVIFLTGHGDVPMAVD LK GAFDFFEKPFNDN+L+DRV E Sbjct: 60 TSGAVLFDIMARRKLTLRLPVIFLTGHGDVPMAVDSLKRGAFDFFEKPFNDNKLIDRVEE 119 Query: 121 ALESSRAGGAEDAVQSRLAALSAREREVLDLILAGKMNKVIADELGISMRTVEVHRAHIF 180 AL +SR G + VQ RL +LSAREREVLDLIL GKMNKVIAD+LGISMRTVEVHRAHIF Sbjct: 120 ALAASREAGVQAQVQVRLDSLSAREREVLDLILIGKMNKVIADQLGISMRTVEVHRAHIF 179 Query: 181 DKMNVKTAVELARLLK 196 DKMNVKTAVELA LLK Sbjct: 180 DKMNVKTAVELAGLLK 195 >gb|EGW61604.1| two component transcriptional regulator, LuxR family [Dechlorosoma suillum PS] Length = 200 Score = 217 bits (553), Expect = 7e-55, Method: Composition-based stats. Identities = 120/198 (60%), Positives = 151/198 (76%), Gaps = 8/198 (4%) Query: 3 HIVDDEEIIRDSLTWLARSRNIAAIGYESGAAVLGALAHASGIDAEGECLLLDVRMPGTS 62 HI+DD+E IRD+L+WL +SR +A+ + S A L A +ASG +G CLLLD+RM G S Sbjct: 6 HIIDDDEAIRDALSWLLQSRGVASATWPSAEAFLEAW-NASGESLQG-CLLLDIRMDGMS 63 Query: 63 GVALFNELKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLEAL 122 G+ LF L+ KGL + PVIFLTGHGDVPMAV LK GAFDF EKPFNDN+L++RV+EA+ Sbjct: 64 GLELFEHLQGKGL--KLPVIFLTGHGDVPMAVSSLKKGAFDFVEKPFNDNELVNRVIEAM 121 Query: 123 ESSRAGGAEDA----VQSRLAALSAREREVLDLILAGKMNKVIADELGISMRTVEVHRAH 178 ++ + A VQSRL L+ RER++++LIL GK NKVIADEL ISMRTVEVHRAH Sbjct: 122 DADARNQEKQAISASVQSRLDTLTTRERQIMELILVGKFNKVIADELQISMRTVEVHRAH 181 Query: 179 IFDKMNVKTAVELARLLK 196 +F+KM V+TAVELA+LLK Sbjct: 182 LFEKMGVRTAVELAQLLK 199