BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2526.p         (453 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774264.1| N-acetylmuramoyl-l-alanine amidase [Herbaspi...   811   0.0  
ref|YP_004754216.1| N-acetylmuramoyl-L-alanine amidase AmiC [Col...   642   0.0  
ref|YP_001352154.1| N-acetylmuramoyl-L-alanine amidase [Janthino...   629   e-178
ref|YP_001098757.1| N-acetylmuramoyl-L-alanine amidase [Herminii...   617   e-174
ref|ZP_08276437.1| N-acetylmuramoyl-L-alanine amidase [Oxalobact...   598   e-169

>ref|YP_003774264.1| N-acetylmuramoyl-l-alanine amidase [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ62356.1| N-acetylmuramoyl-l-alanine amidase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 453

 Score =  811 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 440/453 (97%), Positives = 446/453 (98%)

Query: 1   MPRSTEIRSQPVKSKTRRTILKAGGALFVSVVTPLPALASQILAVRVWPSEDYTRVTLEN 60
           MPRS EIRS+PVKSK+RRTILKAGGALFVSV+TPLPALASQILAVRVWPS+DYTRVTLEN
Sbjct: 1   MPRSPEIRSKPVKSKSRRTILKAGGALFVSVITPLPALASQILAVRVWPSDDYTRVTLEN 60

Query: 61  DSDLKVTHFVVKNPERLVVDIEGIDLNSTLKDLVAKIQPNDPYIKQVRVGQNRPSVVRLV 120
           DSDLKVTHFVVKNPERLVVDIEGIDLNSTLKDLVAKIQPNDPYIKQVRVGQNRPSVVRLV
Sbjct: 61  DSDLKVTHFVVKNPERLVVDIEGIDLNSTLKDLVAKIQPNDPYIKQVRVGQNRPSVVRLV 120

Query: 121 FDLKDEIKPQVFTLAPVGEYKYRFVIDLYPAAPPDPIAALIQKGEWNKESPATPPLAQAP 180
           FDLKDEIKPQVFTLAPVGEYKYRFVIDLYPA PPDPIAALIQKG+WNKESPA PPLAQ P
Sbjct: 121 FDLKDEIKPQVFTLAPVGEYKYRFVIDLYPANPPDPIAALIQKGDWNKESPANPPLAQGP 180

Query: 181 AAPPKPDPAPLAEIKPQPEDKTERNPKVVPDEPRMQLTRMITIALDPGHGGEDPGATGAR 240
             PPKPDPAPLAEIKPQPEDK ERNPKVVPDEPRMQLTRMITIALDPGHGGEDPGATGAR
Sbjct: 181 VTPPKPDPAPLAEIKPQPEDKNERNPKVVPDEPRMQLTRMITIALDPGHGGEDPGATGAR 240

Query: 241 GNREKDVVLSIAKRLKRKIEQYPNMRVMLTRDADFFVPLGQRVVKARKVQADLFVSIHAD 300
           GNREKDVVLSIAKRLKRKIEQYPNMRVMLTRDADFFVPLGQRVVKARKVQADLFVSIHAD
Sbjct: 241 GNREKDVVLSIAKRLKRKIEQYPNMRVMLTRDADFFVPLGQRVVKARKVQADLFVSIHAD 300

Query: 301 AFVQPTARGSSVFALSEKGASSTAARWLANKENSADLIGGVNIKTHDRQLASVLLDLSTT 360
           AFVQPTARGSSVFALSEKGASSTAARWLANKENSADLIGGVNIKTHDRQLASVLLDLSTT
Sbjct: 301 AFVQPTARGSSVFALSEKGASSTAARWLANKENSADLIGGVNIKTHDRQLASVLLDLSTT 360

Query: 361 AQINDSLRVGNAVLKEIGGINKLHKGAVEQAGFAVLKAPDIPSILIETAFISNPEEEAKL 420
           AQINDSLRVGNAVLKEIGGINKLHKGAVEQAGFAVLKAPDIPSILIETAFISNPEEEAKL
Sbjct: 361 AQINDSLRVGNAVLKEIGGINKLHKGAVEQAGFAVLKAPDIPSILIETAFISNPEEEAKL 420

Query: 421 TDERYQEQMADAILTGIRNYFAKNPPLAKNRLT 453
           TDERYQEQMADAILTGIRNYFAKNPPLAKN+LT
Sbjct: 421 TDERYQEQMADAILTGIRNYFAKNPPLAKNKLT 453


>ref|YP_004754216.1| N-acetylmuramoyl-L-alanine amidase AmiC [Collimonas fungivorans
           Ter331]
 gb|AEK63393.1| N-acetylmuramoyl-L-alanine amidase AmiC precursor [Collimonas
           fungivorans Ter331]
          Length = 449

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/462 (76%), Positives = 394/462 (85%), Gaps = 22/462 (4%)

Query: 1   MPRSTEIRSQPVKSKTRRTILKAGGALFVSVVTPLPALASQILAVRVWPSEDYTRVTLEN 60
           M RSTEI ++P+KSK RRTILKAGG L +SV+ PL A A+QI+AVRVWP++DYTRVTLEN
Sbjct: 1   MSRSTEICTKPLKSKIRRTILKAGGTLLISVLAPLSARAAQIVAVRVWPADDYTRVTLEN 60

Query: 61  DSDLKVTHFVVKNPERLVVDIEGIDLNSTLKDLVAKIQPNDPYIKQVRVGQNRPSVVRLV 120
           D++LK THF+V+NP+R+VVDIEGI+LN TLK+LVAKIQPNDPYIKQVRVGQNRP+VVRLV
Sbjct: 61  DAELKTTHFLVQNPDRMVVDIEGIELNPTLKELVAKIQPNDPYIKQVRVGQNRPNVVRLV 120

Query: 121 FDLKDEIKPQVFTLAPVGEYKYRFVIDLYPAAPPDPIAALIQKGEWNKESPA--TPPLAQ 178
           FDLK+E+KPQVFTLAPVG Y++R V DLYP  PPDPI A+I+KGEW   +P    PP+AQ
Sbjct: 121 FDLKEEVKPQVFTLAPVGGYQHRLVFDLYPVNPPDPIQAMIEKGEWPSANPGEIAPPVAQ 180

Query: 179 AP-------AAPPKPDPAPLAEIKPQPEDKTERNPKVVPDEPRMQLTRMITIALDPGHGG 231
                       P+P+  P+A I P+P+  T              LTRMITIALDPGHGG
Sbjct: 181 TKPEQKPTPPLQPQPEQPPVARIDPKPDRTT-------------TLTRMITIALDPGHGG 227

Query: 232 EDPGATGARGNREKDVVLSIAKRLKRKIEQYPNMRVMLTRDADFFVPLGQRVVKARKVQA 291
           EDPGATG  GNREKDVVLSIAKRLK KIEQ PNMRVMLTRDADFFVPLG RV KARKVQA
Sbjct: 228 EDPGATGRGGNREKDVVLSIAKRLKAKIEQQPNMRVMLTRDADFFVPLGVRVQKARKVQA 287

Query: 292 DLFVSIHADAFVQPTARGSSVFALSEKGASSTAARWLANKENSADLIGGVNIKTHDRQLA 351
           DLFVSIHADAFV PTARGSSVFALSEKGASSTAARWLANKENSADLIGG+NIK+HDRQLA
Sbjct: 288 DLFVSIHADAFVTPTARGSSVFALSEKGASSTAARWLANKENSADLIGGINIKSHDRQLA 347

Query: 352 SVLLDLSTTAQINDSLRVGNAVLKEIGGINKLHKGAVEQAGFAVLKAPDIPSILIETAFI 411
           SVLLDLSTTAQINDS+++G+AVL EIGGINKLHKGAVEQAGFAVLKAPDIPSILIETAFI
Sbjct: 348 SVLLDLSTTAQINDSMKLGSAVLSEIGGINKLHKGAVEQAGFAVLKAPDIPSILIETAFI 407

Query: 412 SNPEEEAKLTDERYQEQMADAILTGIRNYFAKNPPLAKNRLT 453
           SNPEEEA+LTD  YQ+QMADA+L GI+ YFA NPPLA+NRLT
Sbjct: 408 SNPEEEARLTDNAYQDQMADAVLKGIKKYFAHNPPLARNRLT 449


>ref|YP_001352154.1| N-acetylmuramoyl-L-alanine amidase [Janthinobacterium sp.
           Marseille]
 gb|ABR89062.1| N-acetylmuramoyl-L-alanine amidase [Janthinobacterium sp.
           Marseille]
          Length = 434

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 337/453 (74%), Positives = 382/453 (84%), Gaps = 21/453 (4%)

Query: 1   MPRSTEIRSQPVKSKTRRTILKAGGALFVSVVTPLPALASQILAVRVWPSEDYTRVTLEN 60
           M  STEIRS+PVK+K RRT+LKAGG L +S+ +PLPA ASQILAVRVWPSEDYTRVTLEN
Sbjct: 1   MSESTEIRSKPVKAKVRRTVLKAGGTLLISLFSPLPAFASQILAVRVWPSEDYTRVTLEN 60

Query: 61  DSDLKVTHFVVKNPERLVVDIEGIDLNSTLKDLVAKIQPNDPYIKQVRVGQNRPSVVRLV 120
           D++LK  HF++K+PERLVVD+EGIDLN TLK L+AKIQPNDPYIKQVRVGQNRP VVRLV
Sbjct: 61  DANLKTNHFIIKDPERLVVDVEGIDLNPTLKSLIAKIQPNDPYIKQVRVGQNRPGVVRLV 120

Query: 121 FDLKDEIKPQVFTLAPVGEYKYRFVIDLYPAAPPDPIAALIQKGEWNKESPATPPLAQAP 180
           FDLK+E+ PQVFTLAPV +Y++R V DLYP  PPDPIAALI+KG+W+ + P  P +    
Sbjct: 121 FDLKEEVNPQVFTLAPVDKYQHRLVFDLYPVNPPDPIAALIEKGQWSLDKPNEPTM---- 176

Query: 181 AAPPKPDPAPLAEIKPQ-PEDKTERNPKVVPDEPRMQLTRMITIALDPGHGGEDPGATGA 239
                  P P+AE+KP   E K +R P         Q++RM+TIALDPGHGGEDPGA G 
Sbjct: 177 -------PPPVAEVKPPFAEPKNDRAP---------QVSRMLTIALDPGHGGEDPGAVGR 220

Query: 240 RGNREKDVVLSIAKRLKRKIEQYPNMRVMLTRDADFFVPLGQRVVKARKVQADLFVSIHA 299
            G+ EK +VLSIAKRLK K+EQ+PNMRVMLTRD D+FVPL  RV KARKVQADLFVSIHA
Sbjct: 221 GGSYEKHIVLSIAKRLKAKLEQHPNMRVMLTRDGDYFVPLHVRVQKARKVQADLFVSIHA 280

Query: 300 DAFVQPTARGSSVFALSEKGASSTAARWLANKENSADLIGGVNIKTHDRQLASVLLDLST 359
           DAFVQPTA GSSVFALSEKGASSTAARWLANKEN+ADLIGG NIK HD+QLASVLLDLST
Sbjct: 281 DAFVQPTANGSSVFALSEKGASSTAARWLANKENAADLIGGTNIKNHDKQLASVLLDLST 340

Query: 360 TAQINDSLRVGNAVLKEIGGINKLHKGAVEQAGFAVLKAPDIPSILIETAFISNPEEEAK 419
           TAQINDSLR+G AVL EIGG+N+LHK AVEQAGFAVLKAPDIPSILIETAFISNPEEEAK
Sbjct: 341 TAQINDSLRLGKAVLNEIGGVNRLHKNAVEQAGFAVLKAPDIPSILIETAFISNPEEEAK 400

Query: 420 LTDERYQEQMADAILTGIRNYFAKNPPLAKNRL 452
           L D+ YQ++MADA+  GIR YFAKNPPLAK+R+
Sbjct: 401 LNDDAYQDRMADAVAQGIRKYFAKNPPLAKSRM 433


>ref|YP_001098757.1| N-acetylmuramoyl-L-alanine amidase [Herminiimonas arsenicoxydans]
 emb|CAL60628.1| N-acetylmuramoyl-L-alanine amidase [Herminiimonas arsenicoxydans]
          Length = 433

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 332/453 (73%), Positives = 379/453 (83%), Gaps = 22/453 (4%)

Query: 1   MPRSTEIRSQPVKSKTRRTILKAGGALFVSVVTPLPALASQILAVRVWPSEDYTRVTLEN 60
           M   TEIRS+ VK+K RRT+LKAGG L +S+ +PL ALASQILAVRVWP+++YTRVTLEN
Sbjct: 1   MSEPTEIRSKSVKAKVRRTVLKAGGTLLISLFSPLSALASQILAVRVWPADEYTRVTLEN 60

Query: 61  DSDLKVTHFVVKNPERLVVDIEGIDLNSTLKDLVAKIQPNDPYIKQVRVGQNRPSVVRLV 120
           D++LK  HF++KNPERLVVD+EGI+L  TLK LVAKIQPNDPYIKQVRVGQNRP+VVRLV
Sbjct: 61  DANLKTNHFIIKNPERLVVDVEGIELGPTLKSLVAKIQPNDPYIKQVRVGQNRPNVVRLV 120

Query: 121 FDLKDEIKPQVFTLAPVGEYKYRFVIDLYPAAPPDPIAALIQKGEWNKESPATPPLAQAP 180
           FDLK+E+ PQVFTLAPVGEY++R V DLYP  PPDPIAALI+KG+W+ +           
Sbjct: 121 FDLKEEVNPQVFTLAPVGEYQHRLVFDLYPVNPPDPIAALIEKGQWSID----------- 169

Query: 181 AAPPKPDPAPLAEIKPQ-PEDKTERNPKVVPDEPRMQLTRMITIALDPGHGGEDPGATGA 239
            AP    P P+AEIKP   E K +R P         Q+ RM+TIALDPGHGGEDPGA G 
Sbjct: 170 -APTDTLPPPVAEIKPPYAEPKADRAP---------QVNRMLTIALDPGHGGEDPGAVGR 219

Query: 240 RGNREKDVVLSIAKRLKRKIEQYPNMRVMLTRDADFFVPLGQRVVKARKVQADLFVSIHA 299
            G+ EK++VL+IAKRLK K+EQ+PNMRVMLTRD D+FVPL  RV KARKVQADLFVSIHA
Sbjct: 220 GGSYEKNIVLAIAKRLKAKLEQHPNMRVMLTRDGDYFVPLHVRVQKARKVQADLFVSIHA 279

Query: 300 DAFVQPTARGSSVFALSEKGASSTAARWLANKENSADLIGGVNIKTHDRQLASVLLDLST 359
           DAFVQPTA GSSVFALSEKGASSTAARWLANKEN+ADLIGG NIK HD+QLASVLLDLST
Sbjct: 280 DAFVQPTANGSSVFALSEKGASSTAARWLANKENAADLIGGANIKNHDKQLASVLLDLST 339

Query: 360 TAQINDSLRVGNAVLKEIGGINKLHKGAVEQAGFAVLKAPDIPSILIETAFISNPEEEAK 419
           TAQINDSL++G AVL EIGGIN+LHKGAVEQAGFAVLKAPDIPSILIETAFISNP EEA+
Sbjct: 340 TAQINDSLKLGKAVLNEIGGINRLHKGAVEQAGFAVLKAPDIPSILIETAFISNPAEEAR 399

Query: 420 LTDERYQEQMADAILTGIRNYFAKNPPLAKNRL 452
           L D+ YQ++MADA+  GIR YFAKNPPLAK ++
Sbjct: 400 LNDDAYQDRMADAVSQGIRKYFAKNPPLAKGKM 432


>ref|ZP_08276437.1| N-acetylmuramoyl-L-alanine amidase [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF30091.1| N-acetylmuramoyl-L-alanine amidase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 436

 Score =  598 bits (1542), Expect = e-169,   Method: Composition-based stats.
 Identities = 322/441 (73%), Positives = 371/441 (84%), Gaps = 10/441 (2%)

Query: 17  RRTILKAGGALFVSVVTPLPALASQILAVRVWPSEDYTRVTLENDSDLKVTHFVVKNPER 76
           RRT+L+AGG L +SVV P  A A+QI+AVRVWP++DYTRVTLENDSDLK THFV+K+PER
Sbjct: 2   RRTVLQAGGTLLLSVVAPGLARAAQIVAVRVWPADDYTRVTLENDSDLKATHFVIKDPER 61

Query: 77  LVVDIEGIDLNSTLKDLVAKIQPNDPYIKQVRVGQNRPSVVRLVFDLKDEIKPQVFTLAP 136
           LV+DIEG++LN+T+K L+AKIQ NDPYIKQVRVGQNRP+VVRLVFDLK E+ PQVFTL P
Sbjct: 62  LVIDIEGLELNATMKGLIAKIQSNDPYIKQVRVGQNRPNVVRLVFDLKAEVTPQVFTLKP 121

Query: 137 VGEYKYRFVIDLYPAAPPDPIAALIQKGEWNKESPATPPLAQAPAAPPKPDPAPLAEIKP 196
           VG+Y+YR V DLYPA   DPIAALI+KG+W+K+    P    AP A   P+  P     P
Sbjct: 122 VGDYQYRLVFDLYPAKELDPIAALIEKGDWSKDQKFDP---SAPVAQAVPESKPSGRNDP 178

Query: 197 QPEDKTERNPKVVPDEPRMQ----LTRMITIALDPGHGGEDPGATGARGNREKDVVLSIA 252
           + +     +P +   EPR +    LTR++TIALDPGHGGEDPGA G  G+ EKDVVL+IA
Sbjct: 179 RLK---FLDPNIARFEPREEKIPPLTRLLTIALDPGHGGEDPGAVGRNGSHEKDVVLAIA 235

Query: 253 KRLKRKIEQYPNMRVMLTRDADFFVPLGQRVVKARKVQADLFVSIHADAFVQPTARGSSV 312
           KRLK KIE+ PNMRVMLTRD D+FVPL  RV KARKVQADLFVSIHADAFV+PTARGSSV
Sbjct: 236 KRLKAKIEEQPNMRVMLTRDGDYFVPLHVRVEKARKVQADLFVSIHADAFVEPTARGSSV 295

Query: 313 FALSEKGASSTAARWLANKENSADLIGGVNIKTHDRQLASVLLDLSTTAQINDSLRVGNA 372
           FALSEKGA+STAARW+ANKEN+ADLIGGVNIK HDRQLASVLLDLSTTAQI+DS+++  A
Sbjct: 296 FALSEKGATSTAARWMANKENAADLIGGVNIKDHDRQLASVLLDLSTTAQISDSMKLAKA 355

Query: 373 VLKEIGGINKLHKGAVEQAGFAVLKAPDIPSILIETAFISNPEEEAKLTDERYQEQMADA 432
           VL EIGGIN+LHKG+VEQAGFAVLKAPDIPSILIETAFISNPEEEAKL+D  YQ+QMA A
Sbjct: 356 VLGEIGGINRLHKGSVEQAGFAVLKAPDIPSILIETAFISNPEEEAKLSDNAYQDQMAIA 415

Query: 433 ILTGIRNYFAKNPPLAKNRLT 453
           IL GIR YFAKNPPL+KNR+T
Sbjct: 416 ILKGIRIYFAKNPPLSKNRMT 436