BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2520.p (534 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774159.1| diguanylate cyclase GGDEF family protein [He... 560 e-157 emb|CBA30840.1| hypothetical protein Csp_C25570 [Curvibacter put... 217 5e-54 ref|YP_004380321.1| GGDEF [Pseudomonas mendocina NK-01] >gi|3289... 206 6e-51 ref|YP_004067739.1| diguanylate cyclase [Pseudoalteromonas sp. S... 203 8e-50 ref|YP_003675040.1| diguanylate cyclase [Methylotenera versatili... 199 1e-48 >ref|YP_003774159.1| diguanylate cyclase GGDEF family protein [Herbaspirillum seropedicae SmR1] gb|ADJ62251.1| diguanylate cyclase GGDEF family protein [Herbaspirillum seropedicae SmR1] Length = 369 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 275/368 (74%), Positives = 315/368 (85%), Gaps = 3/368 (0%) Query: 158 MALGNIIEQDGSHIHVDSDGARSALQPGFFNAATSHRFPILYRDEHGVTHDIGAWTVYSS 217 MALGNII+ G+ +H++ DG++SA++PGF NAATSHRFPILYRDEHGV HDIG+WTVYSS Sbjct: 1 MALGNIIDSSGAQVHIEEDGSQSAVRPGFLNAATSHRFPILYRDEHGVMHDIGSWTVYSS 60 Query: 218 RHVVIRKVAYGFTLILINSVIKTLVLWFIFLYVFHRWLGRPITRLSDFVRGQDLNQPDHP 277 RHVVI KVAYGFTLILINSVIKTLVLWFIFLYVF RWLG+PITRL+DFVR DLNQ + Sbjct: 61 RHVVIGKVAYGFTLILINSVIKTLVLWFIFLYVFRRWLGQPITRLADFVRELDLNQME-- 118 Query: 278 DNPQRIRLRGRTRHELHFLADAINAMLSSLRKQSRQNRALYAQLEQEKESLRALNKSLEL 337 P+ I L GR RHELHFLADAIN ML+ L + + N ALY +LEQEK+SL ALN+SLEL Sbjct: 119 -TPRSIHLPGRRRHELHFLADAINLMLAKLHRHTIHNHALYKELEQEKQSLSALNRSLEL 177 Query: 338 RIAERTRDLAQANERLRSLSLTDGLTGIANRRSFDETLDHEWRRSLRHAKPLTVAFIDVD 397 RIAERTRDLAQANE+LRSLSLTDGLTGIANRRSFDETL+ EWRRS+RH PL +AFIDVD Sbjct: 178 RIAERTRDLAQANEQLRSLSLTDGLTGIANRRSFDETLEQEWRRSMRHGTPLMLAFIDVD 237 Query: 398 WFKPYNDHYGHVAGDAVLRQVAQTLQHTIGRAGETVARYGGEEFAVILAETDGLQGQHIV 457 WFKPYNDHYGH+AGDAVLRQVAQTL+ +I R G+TVARYGGEEFA+I A+TDG G ++ Sbjct: 238 WFKPYNDHYGHLAGDAVLRQVAQTLRQSIARVGDTVARYGGEEFAIIAADTDGQAGADML 297 Query: 458 QRMCDAIHALNLPHAGSALGRITISAGVAWCVPAHPDARLESLLQAADRALYQAKTDGRN 517 +RMCDA+HAL + HAGSA+GRITISAGVA C P P A L+ LLQAAD ALY+AK +GRN Sbjct: 298 RRMCDAVHALAIAHAGSAMGRITISAGVASCNPGQPGAGLDGLLQAADAALYRAKMEGRN 357 Query: 518 RVLLAAAL 525 RV+LA L Sbjct: 358 RVVLATEL 365 >emb|CBA30840.1| hypothetical protein Csp_C25570 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 600 Score = 217 bits (552), Expect = 5e-54, Method: Composition-based stats. Identities = 119/230 (51%), Positives = 146/230 (63%), Gaps = 5/230 (2%) Query: 296 LADAINAMLSSLRKQSRQNRALYAQLEQEKESLRALNKSLELRIAERTRDLAQANERLRS 355 LAD N M R++ R L + +Q E+LRA + L R+ ERTR L ANERL + Sbjct: 374 LADRFNQMR---REKHMAQRELVSTQQQLVETLRASEQELAQRVEERTRQLQVANERLEA 430 Query: 356 LSLTDGLTGIANRRSFDETLDHEWRRSLRHAKPLTVAFIDVDWFKPYNDHYGHVAGDAVL 415 LS+ DGLTGIANRR FD+ L EW R R +PL + +DVDWFK YNDH+GH AGD L Sbjct: 431 LSMVDGLTGIANRRHFDQVLHKEWTRLERAGQPLALVMLDVDWFKRYNDHFGHQAGDECL 490 Query: 416 RQVAQTLQHTIGRAGETVARYGGEEFAVILAETDGLQGQHIVQRMCDAIHALNLPHAGSA 475 R VAQ + + RA + VARYGGEEF +I TDG Q + QR CDA+ AL +PH + Sbjct: 491 RAVAQAIS-GVSRASDLVARYGGEEFVIIAPGTDGPQALQMAQRACDAVRALGMPHPLAY 549 Query: 476 LGRITISAGVAWCVPAHPDARLESLLQAADRALYQAKTDGRNRVLLAAAL 525 +T+S GVA VP PD LE+LL AD ALY+AK GRNRV+LA L Sbjct: 550 EAVVTVSCGVAVTVPG-PDDSLENLLGQADDALYEAKAQGRNRVVLAEPL 598 >ref|YP_004380321.1| GGDEF [Pseudomonas mendocina NK-01] gb|AEB58569.1| GGDEF precursor [Pseudomonas mendocina NK-01] Length = 618 Score = 206 bits (525), Expect = 6e-51, Method: Composition-based stats. Identities = 120/225 (53%), Positives = 150/225 (66%), Gaps = 6/225 (2%) Query: 296 LADAINAMLSSLRKQSRQNRALYAQLEQEKESLRALNKSLELRIAERTRDLAQANERLRS 355 LAD IN M K Q R L AQ EQ E+L+ + LE R+A RT +L N RL Sbjct: 393 LADRINVMRQ--EKLQAQARLLEAQ-EQLVETLQHSERELEQRVAVRTEELQVLNSRLEM 449 Query: 356 LSLTDGLTGIANRRSFDETLDHEWRRSLRHAKPLTVAFIDVDWFKPYNDHYGHVAGDAVL 415 LSLTD LTGIANRR FDE L E +R+LR +PL +A +DVDWFK YNDHYGH AGD+ L Sbjct: 450 LSLTDALTGIANRRHFDEVLAKECKRALRVGEPLALAVLDVDWFKTYNDHYGHPAGDSCL 509 Query: 416 RQVAQTLQHTIGRAGETVARYGGEEFAVILAETDGLQG-QHIVQRMCDAIHALNLPHAGS 474 +Q+A TL TI R+ + VARYGGEEF V LA + GL G Q + +++ A+ AL LPH S Sbjct: 510 QQIAHTLAATISRSTDLVARYGGEEF-VFLAPSTGLAGAQSMAEKLVRAVEALALPHERS 568 Query: 475 ALGRITISAGVAWCVPAHPDARLESLLQAADRALYQAKTDGRNRV 519 LG +TIS G+A +P D+ ++LLQ AD ALY+AK+ GRNR+ Sbjct: 569 PLGYVTISVGIA-LMPRDADSPAQALLQRADAALYRAKSQGRNRL 612 >ref|YP_004067739.1| diguanylate cyclase [Pseudoalteromonas sp. SM9913] gb|ADT67588.1| diguanylate cyclase [Pseudoalteromonas sp. SM9913] Length = 426 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 143/456 (31%), Positives = 218/456 (47%), Gaps = 39/456 (8%) Query: 65 SKNSLAVHLLRIIFGSYFLVTLIVTCLQLGAEYEHTQSGVDNELRAMDLTFGASLASSTW 124 S NSL+ ++R+IF Y VT ++T +Q EY TQ + EL+ + T +++S W Sbjct: 7 SPNSLSKKMMRVIFSIYLFVTCLITSMQFLTEYLKTQDSISYELKQLQETVQGPVSTSLW 66 Query: 125 RFQGDVQKATLRGISNLPVVTGVKIEDPQGRLVMALGNIIEQDGSHIHVDSDGARSALQP 184 ++ + G+ +PV+ GV + D G +++ +++L Sbjct: 67 QYDQTQLGVLVDGLVKMPVIEGVDVFDKHGNSMIS--------------KRSYTQASLPL 112 Query: 185 GFFNAATSHRFPILYRDEHGVTHDIGAWTVYSSRHVVIRKVAYGFTLILINSVIKTLVLW 244 F + LY +G +G +YSS VV+ +V +GF LI I ++IK +L+ Sbjct: 113 SIFETKSE-----LYWTLNGTRVFLGTLVLYSSSEVVLDRVLFGFFLIAITAMIKLSILF 167 Query: 245 FIFLYVFHRWLGRPITRLSDFVRGQDLNQPDHPDNP-QRIRLRGRTRHELHFLADAINAM 303 +F++ F R+L RP+ L Q +N+ N +RI L +EL L D +N M Sbjct: 168 GLFIWAFDRYLARPLKELM-----QQVNEVQSSKNTRKRINLSHIENNELSQLQDHMNTM 222 Query: 304 LSSLRKQSRQNRALYAQLEQEKESLRALNKSLELRIAERTRDLAQANERLRSLSLTDGLT 363 L S+ + + LE EK LE + +RT+DL NE+L++L+ D LT Sbjct: 223 LFSMERDRER------LLEDEKSK----RDWLEEAVTKRTKDLQVLNEKLKTLATRDSLT 272 Query: 364 GIANRRSFDETLDHEWRRSLRHAKPLTVAFIDVDWFKPYNDHYGHVAGDAVLRQVAQTLQ 423 G NR SF +T +H S R P + ID+D+FK ND YGH GD VL T+Q Sbjct: 273 GTLNRGSFFDTANHLLELSQRQKLPASFILIDLDYFKNINDTYGHFVGDKVLIHFTDTVQ 332 Query: 424 HTIGRAGETVARYGGEEFAVILAETDGLQGQHIVQRMCDAIHALNLPHAGSALGRITISA 483 I R + + R GGEEFA+ L T + ++ A+ L G + T+S Sbjct: 333 SMI-RESDLIGRVGGEEFALFLPNTGLDNSFKLANKIRKAVVDSTLEVDGETV-IYTVSI 390 Query: 484 GVAWCVPAHPDARLESLLQAADRALYQAKTDGRNRV 519 GVA D + L + AD LY AK GR+RV Sbjct: 391 GVA--SSELKDCSVTELFKVADLKLYCAKDKGRDRV 424 >ref|YP_003675040.1| diguanylate cyclase [Methylotenera versatilis 301] gb|ADI30463.1| diguanylate cyclase [Methylotenera versatilis 301] Length = 485 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 98/195 (50%), Positives = 128/195 (65%), Gaps = 1/195 (0%) Query: 328 LRALNKSLELRIAERTRDLAQANERLRSLSLTDGLTGIANRRSFDETLDHEWRRSLRHAK 387 +R + LE R+++RT +L N +L LS TDGLTGIANRRSFD+ L+ EW R+ R + Sbjct: 292 IRDNERELEDRVSKRTDELQLLNHKLEGLSKTDGLTGIANRRSFDDVLEIEWMRAKRANQ 351 Query: 388 PLTVAFIDVDWFKPYNDHYGHVAGDAVLRQVAQTLQHTIGRAGETVARYGGEEFAVILAE 447 PL +A +D+DWFK YNDHYGH AGD LR+V+ L + R G+ VARYGGEEF I Sbjct: 352 PLALAMLDIDWFKRYNDHYGHQAGDECLRRVSNILASNLCRTGDLVARYGGEEFVFIAPA 411 Query: 448 TDGLQGQHIVQRMCDAIHALNLPHAGSALGRITISAGVAWCVPAHPDARLESLLQAADRA 507 G Q I +++C+A+H+L LPH S G +T+S GVA P + + L++ AD A Sbjct: 412 ISGDQALEISRKICEALHSLALPHELSTFGYVTVSVGVASITP-QGSQKSDVLVKMADDA 470 Query: 508 LYQAKTDGRNRVLLA 522 LYQAK GRNR LLA Sbjct: 471 LYQAKEQGRNRALLA 485