BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2519.p (282 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774158.1| hypothetical protein Hsero_0731 [Herbaspiril... 374 e-102 ref|YP_004196616.1| family 3 extracellular solute-binding protei... 157 1e-36 ref|YP_004194908.1| family 3 extracellular solute-binding protei... 156 3e-36 ref|ZP_01132973.1| hypothetical protein PTD2_13114 [Pseudoaltero... 105 6e-21 ref|YP_003158626.1| hypothetical protein Dbac_2126 [Desulfomicro... 101 2e-19 >ref|YP_003774158.1| hypothetical protein Hsero_0731 [Herbaspirillum seropedicae SmR1] gb|ADJ62250.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 281 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 179/253 (70%), Positives = 212/253 (83%) Query: 30 DQITWGKYNVPPYMIRSGEFAHQGIFDLTLNVLKKEMPGYEHVELEAPFPRINSEIRKGS 89 +QI WG+++VPPYMIR GE+A +GIFDLTL V+ +P Y+HV+L APFPR+ SEIRKGS Sbjct: 29 NQIIWGRHHVPPYMIREGEWAGRGIFDLTLGVVTSHLPQYQHVDLAAPFPRVISEIRKGS 88 Query: 90 HWCFNGMLKTPEREHYGYLSLPMSIFLPLRIIVRRDRVEEFRHRTSLTGLLQDPRLTTSV 149 HWC+ G L+T ERE Y Y SLP SIFLPLR+IVRRDR+ +F H SL LLQ+ +L TSV Sbjct: 89 HWCYIGALRTSEREAYAYFSLPTSIFLPLRVIVRRDRLAQFSHPQSLKSLLQNRQLVTSV 148 Query: 150 MRDRSYSPTVDKLLATYPPRENYSEQMEAIGMLLAGRLDYMVELPLLAFDQARAMGHAGE 209 MRDRSYSPTVD+LLA YP RENYSEQ+EAI MLLAGR+DYM+ELPLLAF QAR +GHA E Sbjct: 149 MRDRSYSPTVDRLLAEYPARENYSEQIEAISMLLAGRIDYMIELPLLAFYQARLLGHADE 208 Query: 210 LVALPMREANEVVFNRVMCPHNEWGRQVVEQVNKVLLAERAKPSYRAIVEKWHDPESVAE 269 L A+ EA+EVVFNRVMCP N WGRQV++QVN+VLLAER P+YRA+VE+WHDPES AE Sbjct: 209 LAAVRTEEADEVVFNRVMCPRNAWGRQVIDQVNQVLLAERPTPAYRAMVERWHDPESTAE 268 Query: 270 IRKIYDKVFLKIP 282 IR++YDKVFLK P Sbjct: 269 IRRLYDKVFLKTP 281 >ref|YP_004196616.1| family 3 extracellular solute-binding protein [Desulfobulbus propionicus DSM 2032] gb|ADW19325.1| extracellular solute-binding protein family 3 [Desulfobulbus propionicus DSM 2032] Length = 292 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 94/292 (32%), Positives = 154/292 (52%), Gaps = 15/292 (5%) Query: 1 MLHRH-WLKTLAHLMCCACLAAMLPIAMAADQITWGKYNVPPYMIRSGEFAHQGIFDLTL 59 M+HR L + ++ C+ + LP A D +TW + PP+ I+SG QG D+ Sbjct: 1 MVHRRPSLASRMLVLLLLCIPSPLP---AKDTVTWMEAVFPPFYIQSGANQEQGYGDIVT 57 Query: 60 NVLKKEMPGYEHVELEAPFPRINSEIRKGSHWCFNGMLKTPEREHYGYLSLPMSIFLPLR 119 ++L++ + YEH E+ R + ++G C G+ KT ER+ + Y S+P I LP Sbjct: 58 DILQEHLSDYEHEEVITNITRHFYKFKQGEKVCSAGLYKTAERDAFMYFSIPSFITLPPV 117 Query: 120 IIVRRDRVEEFRHRTS--LTGLLQDPRLTTSVMRDRSYSPTVDKLLATYPPRENYSE--- 174 +I++++ + F H+T+ L +L + L + +DRSY T+D +L + + N E Sbjct: 118 LIIKKENIANFGHQTTVPLADVLANKGLMIGLAKDRSYGKTLDAILEQHKGQGNLVEFTG 177 Query: 175 ---QMEAIGMLLAGRLDYMVELPLLAFDQARAMGHAGELVALPMREANEVV---FNRVMC 228 MLL RLD ++ LP A QA MG G+++ L + E + + V C Sbjct: 178 QELSFNLFQMLLRNRLDGIIGLPEEALYQAEQMGIRGQVLTLTLAENLQNYDGWMSSVGC 237 Query: 229 PHNEWGRQVVEQVNKVLLAERAKPSYRAIVEKWHDPESVAEIRKIYDKVFLK 280 N WG++++E++N +LL +R YRA E+W D S+ + RK Y +VFLK Sbjct: 238 SKNAWGKEMIEKINAILLEQRPTERYRAAYERWLDAGSIEQYRKAYSEVFLK 289 >ref|YP_004194908.1| family 3 extracellular solute-binding protein [Desulfobulbus propionicus DSM 2032] gb|ADW17617.1| extracellular solute-binding protein family 3 [Desulfobulbus propionicus DSM 2032] Length = 340 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 95/279 (34%), Positives = 145/279 (51%), Gaps = 12/279 (4%) Query: 14 MCCACLAAMLPI-AMAADQITWGKYNVPPYMIRSGEFAHQGIFDLTLNVLKKEMPGYEHV 72 M L LP A A D ITW + ++PP++I+ G +QG D+ +L++ +P Y+H Sbjct: 59 MTLVALVFALPFPAGARDTITWMEVDMPPFLIQEGIDRNQGYGDVVSAILRQRLPEYDHQ 118 Query: 73 ELEAPFPRINSEIRKGSHWCFNGMLKTPEREHYGYLSLPMSIFLPLRIIVRRDRVEEFRH 132 E+ R S KG H C G+ +TPERE + + S+P + +P +IVR+D++ F Sbjct: 119 EMVTNAIRRFSAFEKGEHVCMVGLYRTPEREAFMHFSIPTFLTMPAALIVRKDKLARFGG 178 Query: 133 --RTSLTGLLQDPRLTTSVMRDRSYSPTVDKLLATYPPREN---YSEQM---EAIGMLLA 184 R SL +L +P L +DRSY +VD +L + REN ++ Q ML+ Sbjct: 179 GPRISLDAVLGNPDLAIGFSKDRSYGTSVDAVLKAHGQRENLLLFTGQKLPPNFFAMLMR 238 Query: 185 GRLDYMVELPLLAFDQARAMGHAGELVALPMREAN---EVVFNRVMCPHNEWGRQVVEQV 241 RLD ++ LP A QA +G +L L + E E V C EWG+ V++++ Sbjct: 239 DRLDGLIGLPDEALYQAEQLGLREQLATLLIEENQQGYEGWMCAVGCAKTEWGKAVIDKI 298 Query: 242 NKVLLAERAKPSYRAIVEKWHDPESVAEIRKIYDKVFLK 280 N +L+ ER YR E+W D S R +Y +VFL+ Sbjct: 299 NAILIQERPSERYRQAYERWLDANSKQRYRHLYQQVFLR 337 >ref|ZP_01132973.1| hypothetical protein PTD2_13114 [Pseudoalteromonas tunicata D2] gb|EAR29761.1| hypothetical protein PTD2_13114 [Pseudoalteromonas tunicata D2] Length = 268 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 78/263 (29%), Positives = 121/263 (46%), Gaps = 9/263 (3%) Query: 25 IAMAADQITWGKYNVPPYMIRSGEFAHQGIFDLTLNVLKKEMPGYEHVELEAPFPRINSE 84 +A A +QI W + PP I GEF ++G DL L + ++P YEHV + + E Sbjct: 5 VAHAQEQIIWQLNHAPPSTIVHGEFKNKGFIDLILKEIIDQLPQYEHVIEVSTLASSSFE 64 Query: 85 IRKGSHWCFNGMLKTPEREHYGYLSLPMSIFLPLRIIVRRDRVEEFRHRTSLTGLLQDPR 144 IR + C + TPER+ + S SI P IV ++L LL + Sbjct: 65 IRAKKNVCLPALFDTPERQKFMVFS-NASIAHPSNRIVLLKSKALTMPASNLRHLLANKA 123 Query: 145 LTTSVMRDRSYSPTVDKLLATYPPREN-YSEQMEA----IGMLLAGRLDYMVELPLLAFD 199 L + + RSY +D +LA + P +N Y + E+ I M++AGRLDY + P Sbjct: 124 LFIGLDQARSYGSYIDAILADFEPADNIYRRESESPNGLIEMVVAGRLDYTLAYPFQIQY 183 Query: 200 QARAMGHAGE--LVALPMREANEVVFNRVMCPHNEWGRQVVEQVNKVLLAERAKPSYR-A 256 ++ G G+ L+ + +V C WGR V++QVN+VL + +Y+ A Sbjct: 184 YLQSHGFNGDNPLIEQKIEGLEPFSMGKVACADTPWGRNVIKQVNEVLARIKPTKAYQNA 243 Query: 257 IVEKWHDPESVAEIRKIYDKVFL 279 + W + + Y VFL Sbjct: 244 MTTWWRQSAADPTFVEYYQNVFL 266 >ref|YP_003158626.1| hypothetical protein Dbac_2126 [Desulfomicrobium baculatum DSM 4028] gb|ACU90210.1| conserved hypothetical protein [Desulfomicrobium baculatum DSM 4028] Length = 284 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 78/268 (29%), Positives = 126/268 (47%), Gaps = 13/268 (4%) Query: 19 LAAMLP-IAMAA--DQITWGKYNVPPYMIRSGEFAHQGIFDLTLNVLKKEMPGYEHVELE 75 L LP +AMA D++TW PP I SG +A QGI D+ ++ +E+ +EH + Sbjct: 13 LVVFLPCVAMAQSRDEVTWMHAEFPPLRITSGPYAGQGISDMIHELMGRELVEFEHAIVT 72 Query: 76 APFPRINSEIRKGSHWCFNGMLKTPEREHYGYLSLPMSIFLPLRIIVRRDRVEEFR--HR 133 A R + + G + G++ +R+ S+P + P+ ++VR + Sbjct: 73 ANLSRTLNWMENGRNVLAVGIIPNSQRDRVMQYSVPCVLVPPVCLVVRAGEQDSLGLGGH 132 Query: 134 TSLTGLLQDPRLTTSVMRDRSYSPTVDKLLATYPPRENY-----SEQMEAI-GMLLAGRL 187 SL + RL V DRSY P +D +L + P S E++ MLL GR+ Sbjct: 133 VSLRDFIARKRL--GVAADRSYGPELDSVLLSSPDLSRVVVNQGSNLFESLLEMLLLGRV 190 Query: 188 DYMVELPLLAFDQARAMGHAGELVALPMREANEVVFNRVMCPHNEWGRQVVEQVNKVLLA 247 D ++ P A AR + P+RE+ + R+ P WG ++++VN++LL Sbjct: 191 DGILAYPFEAVYSARMKNLEDRITIAPLRESMVPLQGRIAAPRTAWGTAMIDRVNEILLR 250 Query: 248 ERAKPSYRAIVEKWHDPESVAEIRKIYD 275 R YR +E+W P V + R +YD Sbjct: 251 NRGSLQYRQALERWLTPSVVEDFRGMYD 278