BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2517.p (338 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774156.1| sugar ABC transporter permease [Herbaspirill... 488 e-136 ref|YP_004154961.1| inner-membrane translocator [Variovorax para... 401 e-110 ref|ZP_03699693.1| Monosaccharide-transporting ATPase [Lutiella ... 386 e-105 ref|YP_004846473.1| ribose ABC transporter permease [Pseudogulbe... 386 e-105 ref|YP_002891269.1| inner-membrane translocator [Tolumonas auens... 307 1e-81 >ref|YP_003774156.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ62248.1| ABC-type sugar transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 344 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 312/327 (95%), Positives = 320/327 (97%) Query: 12 AAARSSSTASQWLLHRLGMLPVLVVLYLLFYALTIYLSGDGSSNFATAENTMNILRQVAI 71 A RSSST +QWLLHRLGMLPVLVVLYLLFY LT+YLSGDG+SNFA+AENTMNILRQVAI Sbjct: 16 GARRSSSTTAQWLLHRLGMLPVLVVLYLLFYGLTLYLSGDGTSNFASAENTMNILRQVAI 75 Query: 72 NLVLAAGMTFVILTAGIDLSVGSVLAVSAVLGMQISLSAAPGWSIPMFIVSGLLMGMVNG 131 NLVLAAGMTFVILTAGIDLSVGSVLAVSAVLGMQ+SL AAPGW+IPMFI SGL+MGMVNG Sbjct: 76 NLVLAAGMTFVILTAGIDLSVGSVLAVSAVLGMQVSLGAAPGWAIPMFIFSGLVMGMVNG 135 Query: 132 AMVAFLNINAFVVTLGTMTAFRGAAYLLADGTTVLNNDIPSFEWIGNGDFLHVPWLIWVA 191 AMVA LNINAFVVTLGTMTAFRGAAYLLADGTTVLNNDIPSFEWIGNGDFLHVPWLIWVA Sbjct: 136 AMVALLNINAFVVTLGTMTAFRGAAYLLADGTTVLNNDIPSFEWIGNGDFLHVPWLIWVA 195 Query: 192 VAVVLLSWVILRKTVLGMHIYAIGGNLQAARLTGIRVGLVLLFVYSISGLFSGLAGAMSA 251 VAVVLLSWVILRKTVLGMHIYAIGGNLQAARLTGIRVGLVLLFVYSISGLFSGLAGAMSA Sbjct: 196 VAVVLLSWVILRKTVLGMHIYAIGGNLQAARLTGIRVGLVLLFVYSISGLFSGLAGAMSA 255 Query: 252 SRLYGANGNWGSGYELDAIAAVVLGGTSLMGGVGTIWGTVVGALIIGVMNNGLTILGLSS 311 SRLYGANGNWGSGYELDAIAAVVLGGTSLMGGVG+IWGTVVGALIIGVMNNGLTILGLSS Sbjct: 256 SRLYGANGNWGSGYELDAIAAVVLGGTSLMGGVGSIWGTVVGALIIGVMNNGLTILGLSS 315 Query: 312 FWQYVAKGAVIVLAVILDKWRQKDAAQ 338 FWQYVAKGAVIVLAVILDKWRQKDAAQ Sbjct: 316 FWQYVAKGAVIVLAVILDKWRQKDAAQ 342 >ref|YP_004154961.1| inner-membrane translocator [Variovorax paradoxus EPS] gb|ADU36850.1| inner-membrane translocator [Variovorax paradoxus EPS] Length = 343 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 249/335 (74%), Positives = 289/335 (86%), Gaps = 2/335 (0%) Query: 2 AHPTPLHNNAAAARSSSTASQWLLHRLGMLPVLVVLYLLFYALTIYLSGDGSSNFATAEN 61 A P A AR+ A +L RLGMLP L++LY++F+ LT+Y+SGDG SNFAT N Sbjct: 9 APPAASPPTGAPARTGRAAG--VLQRLGMLPALLILYVVFWGLTVYVSGDGGSNFATTAN 66 Query: 62 TMNILRQVAINLVLAAGMTFVILTAGIDLSVGSVLAVSAVLGMQISLSAAPGWSIPMFIV 121 TMNILRQV+INLVLAAGMTFVILTAGIDLSVGS+LAVSAVLGM SL++ G S+P+F+ Sbjct: 67 TMNILRQVSINLVLAAGMTFVILTAGIDLSVGSMLAVSAVLGMLTSLTSHAGLSLPVFLA 126 Query: 122 SGLLMGMVNGAMVAFLNINAFVVTLGTMTAFRGAAYLLADGTTVLNNDIPSFEWIGNGDF 181 +GL MG++NG VA L IN F+VTLGTMTA RGAAYL ADGTTVLN++IPSF WIGN DF Sbjct: 127 AGLAMGLINGTTVALLKINPFIVTLGTMTALRGAAYLFADGTTVLNSEIPSFGWIGNEDF 186 Query: 182 LHVPWLIWVAVAVVLLSWVILRKTVLGMHIYAIGGNLQAARLTGIRVGLVLLFVYSISGL 241 L +PWL+W+A V LLSWVILRKT+LG+HIYA+GGN +AARLTGI VG VLLFVY+ISGL Sbjct: 187 LGLPWLVWIAAGVTLLSWVILRKTILGLHIYAVGGNPEAARLTGIGVGGVLLFVYAISGL 246 Query: 242 FSGLAGAMSASRLYGANGNWGSGYELDAIAAVVLGGTSLMGGVGTIWGTVVGALIIGVMN 301 FSGLAGAMSASRL+GANGNWG+GYELDAIAAVVLGGTSLMGGVG+I GTV+GALIIGV+N Sbjct: 247 FSGLAGAMSASRLFGANGNWGTGYELDAIAAVVLGGTSLMGGVGSIVGTVIGALIIGVIN 306 Query: 302 NGLTILGLSSFWQYVAKGAVIVLAVILDKWRQKDA 336 NGLTI+G+SSFWQYVAKGAVI+LAVI+D+WRQK A Sbjct: 307 NGLTIMGVSSFWQYVAKGAVILLAVIIDRWRQKQA 341 >ref|ZP_03699693.1| Monosaccharide-transporting ATPase [Lutiella nitroferrum 2002] gb|EEG07375.1| Monosaccharide-transporting ATPase [Lutiella nitroferrum 2002] Length = 342 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 246/327 (75%), Positives = 285/327 (87%), Gaps = 1/327 (0%) Query: 12 AAARSSSTASQWLLHRLGMLPVLVVLYLLFYALTIYLSGDGSSNFATAENTMNILRQVAI 71 AA + + + L ++GMLPVLVVLY FY LT++ S DGS+NF T +N++NILRQ +I Sbjct: 14 AAPKPAGFSLGRLYSKVGMLPVLVVLYAAFYLLTLHFSEDGSTNFITLDNSLNILRQTSI 73 Query: 72 NLVLAAGMTFVILTAGIDLSVGSVLAVSAVLGMQISLSA-APGWSIPMFIVSGLLMGMVN 130 NLVLA+GMTFVILTAGIDLSVGS+LAV+AVLGM SL AP ++P FIV+GL MG++N Sbjct: 74 NLVLASGMTFVILTAGIDLSVGSMLAVAAVLGMLTSLPGHAPLLALPAFIVAGLAMGVLN 133 Query: 131 GAMVAFLNINAFVVTLGTMTAFRGAAYLLADGTTVLNNDIPSFEWIGNGDFLHVPWLIWV 190 G+MVA L IN FVVTLGTMTA RGAAYL ADGTTVLN+DIPSFEWIGNG+ +PWL+W+ Sbjct: 134 GSMVAMLGINPFVVTLGTMTALRGAAYLFADGTTVLNSDIPSFEWIGNGNLFAIPWLVWL 193 Query: 191 AVAVVLLSWVILRKTVLGMHIYAIGGNLQAARLTGIRVGLVLLFVYSISGLFSGLAGAMS 250 A AVV+ SW +L++TVLG+HIYA+GGN QAARLTGI+V VLLFVYSISGLF+GLAGAMS Sbjct: 194 AAAVVVASWFVLKRTVLGLHIYAVGGNPQAARLTGIKVNRVLLFVYSISGLFAGLAGAMS 253 Query: 251 ASRLYGANGNWGSGYELDAIAAVVLGGTSLMGGVGTIWGTVVGALIIGVMNNGLTILGLS 310 ASRLYGANGNWG+GYELDAIAAVVLGGTSLMGGVG+IWGTVVGALIIGVMNNGLTILG+S Sbjct: 254 ASRLYGANGNWGTGYELDAIAAVVLGGTSLMGGVGSIWGTVVGALIIGVMNNGLTILGVS 313 Query: 311 SFWQYVAKGAVIVLAVILDKWRQKDAA 337 SFWQYVAKGAVIVLAV+LDKWRQK + Sbjct: 314 SFWQYVAKGAVIVLAVMLDKWRQKQSG 340 >ref|YP_004846473.1| ribose ABC transporter permease [Pseudogulbenkiania sp. NH8B] dbj|BAK76059.1| ribose ABC transporter, permease protein [Pseudogulbenkiania sp. NH8B] Length = 342 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 246/327 (75%), Positives = 284/327 (86%), Gaps = 1/327 (0%) Query: 12 AAARSSSTASQWLLHRLGMLPVLVVLYLLFYALTIYLSGDGSSNFATAENTMNILRQVAI 71 AA + + + L ++GMLPVLVVLY FY LT++ S DGS+NF T +N++NILRQ +I Sbjct: 14 AAPKPAGFSLGRLYSKVGMLPVLVVLYAAFYLLTLHFSEDGSTNFITVDNSLNILRQTSI 73 Query: 72 NLVLAAGMTFVILTAGIDLSVGSVLAVSAVLGMQISLSA-APGWSIPMFIVSGLLMGMVN 130 NLVLA+GMTFVILTAGIDLSVGS+LAV+AVLGM SL AP ++P FIV+GL MG++N Sbjct: 74 NLVLASGMTFVILTAGIDLSVGSMLAVAAVLGMLTSLPGHAPLLALPAFIVAGLAMGVLN 133 Query: 131 GAMVAFLNINAFVVTLGTMTAFRGAAYLLADGTTVLNNDIPSFEWIGNGDFLHVPWLIWV 190 G+MVA L IN FVVTLGTMTA RGAAYL ADGTTVLN+DIPSFEWIGNG +PWL+W+ Sbjct: 134 GSMVAMLGINPFVVTLGTMTALRGAAYLFADGTTVLNSDIPSFEWIGNGSLFAIPWLVWL 193 Query: 191 AVAVVLLSWVILRKTVLGMHIYAIGGNLQAARLTGIRVGLVLLFVYSISGLFSGLAGAMS 250 A AVV+ SW +L++TVLG+HIYA+GGN QAARLTGI+V VLLFVYSISGLF+GLAGAMS Sbjct: 194 AAAVVVASWFVLKRTVLGLHIYAVGGNPQAARLTGIKVKRVLLFVYSISGLFAGLAGAMS 253 Query: 251 ASRLYGANGNWGSGYELDAIAAVVLGGTSLMGGVGTIWGTVVGALIIGVMNNGLTILGLS 310 ASRLYGANGNWG+GYELDAIAAVVLGGTSLMGGVG+IWGTVVGALIIGVMNNGLTILG+S Sbjct: 254 ASRLYGANGNWGTGYELDAIAAVVLGGTSLMGGVGSIWGTVVGALIIGVMNNGLTILGVS 313 Query: 311 SFWQYVAKGAVIVLAVILDKWRQKDAA 337 SFWQYVAKGAVIVLAV+LDKWRQK + Sbjct: 314 SFWQYVAKGAVIVLAVMLDKWRQKQSG 340 >ref|YP_002891269.1| inner-membrane translocator [Tolumonas auensis DSM 9187] gb|ACQ91683.1| inner-membrane translocator [Tolumonas auensis DSM 9187] Length = 333 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 196/337 (58%), Positives = 248/337 (73%), Gaps = 10/337 (2%) Query: 2 AHPTPLHNNAAAARSSSTASQWLLHRLGMLPVLVVLYLLFYALTIYLSGDGSSNFATAEN 61 A TP + AA + ++ +G+LPVL+++++ F +T NFAT N Sbjct: 4 AMSTPNTHTAATSPEKKFTLHSVIQSVGILPVLILIFIGFSLMT--------PNFATESN 55 Query: 62 TMNILRQVAINLVLAAGMTFVILTAGIDLSVGSVLAVSAVLGMQISLSAAPGW-SIPMFI 120 MNI+RQ +IN VLAAGMTFVI+T GIDLSVGS+L +AV+ M SLS G SIP+ + Sbjct: 56 IMNIVRQSSINTVLAAGMTFVIITGGIDLSVGSILGATAVMAMVTSLSPELGLLSIPVAL 115 Query: 121 VSGLLMGMVNGAMVAFLNINAFVVTLGTMTAFRGAAYLLADGTTVLNNDIPSFEWIGNGD 180 + GLLMG +NG MVA++ + F+ TLGT TA RGAAYLLADGTTV+NNDI SFEWIGN Sbjct: 116 MGGLLMGTLNGVMVAYIGLPPFIATLGTYTALRGAAYLLADGTTVINNDI-SFEWIGNAY 174 Query: 181 FLHVPWLIWVAVAVVLLSWVILRKTVLGMHIYAIGGNLQAARLTGIRVGLVLLFVYSISG 240 +PWL+ + V+ + W ILRKT LGMH+YA+GGN AARLTGI+VGLVL FVY++SG Sbjct: 175 LGPIPWLVVIGFVVIGICWFILRKTTLGMHVYAVGGNANAARLTGIKVGLVLTFVYAMSG 234 Query: 241 LFSGLAGAMSASRLYGANGNWGSGYELDAIAAVVLGGTSLMGGVGTIWGTVVGALIIGVM 300 L +GL G MSASRLY ANGN G GYELDAIAAVVLGGTSL GG+G+I GT++GALII M Sbjct: 235 LMAGLGGIMSASRLYSANGNLGVGYELDAIAAVVLGGTSLSGGIGSITGTLIGALIIAAM 294 Query: 301 NNGLTILGLSSFWQYVAKGAVIVLAVILDKWRQKDAA 337 NNG+T++G+S FWQ V KG VI++AV++DK+R + A Sbjct: 295 NNGMTLMGVSYFWQLVIKGCVIIIAVLIDKYRTRKHA 331