BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2516.p (530 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774155.1| sugar ABC transporter ATPase [Herbaspirillum... 794 0.0 ref|YP_004154959.1| ABC transporter [Variovorax paradoxus EPS] >... 588 e-165 ref|ZP_03699692.1| ABC transporter related protein [Lutiella nit... 581 e-163 ref|YP_004846474.1| ribose ABC transporter ATP-binding protein [... 580 e-163 ref|YP_322687.1| ABC transporter-like protein [Anabaena variabil... 550 e-154 >ref|YP_003774155.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] gb|ADJ62247.1| ABC-type sugar transport system, ATPase component protein [Herbaspirillum seropedicae SmR1] Length = 521 Score = 794 bits (2051), Expect = 0.0, Method: Composition-based stats. Identities = 450/521 (86%), Positives = 468/521 (89%), Gaps = 6/521 (1%) Query: 1 MTSTPILQMTGISKSFGATRALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDD 60 MT TP+LQM GI KSFGAT ALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPD Sbjct: 1 MTQTPLLQMRGIRKSFGATLALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDQ 60 Query: 61 GEILLDGKPVSLRDPGASRAAGINLIYQELAVAPNISVAANVFMGSELRTRWGLIDHAAM 120 GEILLDG+PV+LRDPGASRAAGINLIYQELAVAPNISVAANVFMGSELRTR GLIDHAAM Sbjct: 61 GEILLDGRPVALRDPGASRAAGINLIYQELAVAPNISVAANVFMGSELRTRLGLIDHAAM 120 Query: 121 RKRTDAVLRQLGASFRASDRAGRLSIAEQQQVEIARALVHRSRIVIMDEPTAALSERETE 180 R RTDAVLRQLGA F ASD AGRLSIAEQQQVEIARALVHRSRIVIMDEPTAALSERETE Sbjct: 121 RSRTDAVLRQLGAGFGASDLAGRLSIAEQQQVEIARALVHRSRIVIMDEPTAALSERETE 180 Query: 181 HLFGVVKRLRDEGLAIIYISHRMAEVYALADRVTVLRDGSFVGELAREEIDSERIVQMMV 240 LF VV+RLRDEGLAIIYISHRMAEVYALADRVTVLRDGSFVGEL R+EIDSERIVQMMV Sbjct: 181 QLFNVVRRLRDEGLAIIYISHRMAEVYALADRVTVLRDGSFVGELVRDEIDSERIVQMMV 240 Query: 241 GRSLGEFYQHTRMAPERAAALPVVLQVQDLAGGKVRPASFAVRAGEVLGFAGLVGAGRTE 300 GRSL EFYQH R+AP AA LP V+QV+ LAGGK+RPASF VRAGEVLGFAGLVGAGRTE Sbjct: 241 GRSLSEFYQHQRIAPADAAQLPTVMQVRALAGGKIRPASFDVRAGEVLGFAGLVGAGRTE 300 Query: 301 LARLLFGADARSGGHVLLDGQVVHIDEPRAAMRAGIAYVPEDRKGQGLFLQMAVGANATM 360 LARLLFGAD RSGG +LL+G+ VHID+PRAAMRAGIAYVPEDRKGQGLFLQMAV ANATM Sbjct: 301 LARLLFGADPRSGGDILLEGRPVHIDQPRAAMRAGIAYVPEDRKGQGLFLQMAVAANATM 360 Query: 361 NVAGRHSTAGLVRSGALDGVARDAIQRLNVKVAHPGVAVGKLSGGNQQKVLLARWLEIAP 420 NVA RH+ GLVRS +L GVAR AIQRLNVKVAHP VGKLSGGNQQKVLLARWLEIAP Sbjct: 361 NVASRHTRLGLVRSRSLGGVARAAIQRLNVKVAHPETPVGKLSGGNQQKVLLARWLEIAP 420 Query: 421 KVLILDEPTRGVDIYAKSEIYQLVHKLAEQGVAVVVISSELPEVIGICDRVLVMREGSIT 480 KVLILDEPTRGVDIYAKSEIYQLVH+LA QGVAVVVISSELPEVIGICDRVLVMREG IT Sbjct: 421 KVLILDEPTRGVDIYAKSEIYQLVHRLASQGVAVVVISSELPEVIGICDRVLVMREGMIT 480 Query: 481 GELAGAAITQEAIMHLATD------AGGMHGAHGQAAPASG 515 GELAGAAITQE IM LATD A H + AP+ G Sbjct: 481 GELAGAAITQENIMRLATDTNVPRTAPASHSSPTPLAPSHG 521 >ref|YP_004154959.1| ABC transporter [Variovorax paradoxus EPS] gb|ADU36848.1| ABC transporter related protein [Variovorax paradoxus EPS] Length = 512 Score = 588 bits (1515), Expect = e-165, Method: Composition-based stats. Identities = 327/496 (65%), Positives = 400/496 (80%), Gaps = 6/496 (1%) Query: 6 ILQMTGISKSFGATRALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDDGEILL 65 +L+M+GI K FGATRAL DMHL +RPGEIHALMGENGAGKSTLMK+LSGV+ PD G+I L Sbjct: 14 VLEMSGIHKRFGATRALHDMHLQVRPGEIHALMGENGAGKSTLMKILSGVYQPDAGQIRL 73 Query: 66 DGKPVSLRDPGASRAAGINLIYQELAVAPNISVAANVFMGSELRTRWGLIDHAAMRKRTD 125 G+PV++R P + AGINLIYQEL++A +++VA NVFMG+E R L+D A M + T+ Sbjct: 74 AGEPVAIRSPAHGQRAGINLIYQELSIARHLTVAENVFMGNEPRAALWLVDRARMLRETE 133 Query: 126 AVLRQLGASFRASDRAGRLSIAEQQQVEIARALVHRSRIVIMDEPTAALSERETEHLFGV 185 VL+QLGA F A AGRLSIAEQQQVEIARALVH+ RI+IMDEPTAALS+RET HLF V Sbjct: 134 RVLQQLGAQFGADWPAGRLSIAEQQQVEIARALVHKGRILIMDEPTAALSDRETAHLFRV 193 Query: 186 VKRLRDEGLAIIYISHRMAEVYALADRVTVLRDGSFVGELAREEIDSERIVQMMVGRSLG 245 +++LRD G+AIIYISHRMAEV ALADRVTVLRDG V +LAR+EID +RIVQMMVGR+L Sbjct: 194 MRQLRDAGIAIIYISHRMAEVTALADRVTVLRDGCHVADLARDEIDEQRIVQMMVGRALT 253 Query: 246 EFYQHT-RMAPERAAALPVVLQVQDLAGGKVRPASFAVRAGEVLGFAGLVGAGRTELARL 304 +FYQH + P R V+L+++D++G + RP+S V AGEVLG AGLVGAGR+ELARL Sbjct: 254 DFYQHRGQRKPGR-----VMLELRDVSGPRNRPSSLKVHAGEVLGLAGLVGAGRSELARL 308 Query: 305 LFGADARSGGHVLLDGQVVHIDEPRAAMRAGIAYVPEDRKGQGLFLQMAVGANATMNVAG 364 GADAR+GG +L+DG+ V + P A+R G+ YVPEDRKGQGLFLQ++ N +NV Sbjct: 309 AVGADARTGGTILVDGKPVDVRRPLDAIRLGLGYVPEDRKGQGLFLQLSALTNVAINVLP 368 Query: 365 RHSTAGLVRSGALDGVARDAIQRLNVKVAHPGVAVGKLSGGNQQKVLLARWLEIAPKVLI 424 RH+ AG++ GALD + R AI RLNVK++ P VG LSGGNQQK+LLARWLEI P+VLI Sbjct: 369 RHAVAGVLNHGALDRLTRQAIARLNVKISGPQGIVGALSGGNQQKLLLARWLEIQPRVLI 428 Query: 425 LDEPTRGVDIYAKSEIYQLVHKLAEQGVAVVVISSELPEVIGICDRVLVMREGSITGELA 484 LDEPTRGVD+ AKSEIY+++ +L+E GVAVVVISSELPE++G+CDRVLVMREG+I GELA Sbjct: 429 LDEPTRGVDVGAKSEIYKIIGELSEAGVAVVVISSELPEIVGVCDRVLVMREGAIAGELA 488 Query: 485 GAAITQEAIMHLATDA 500 G ITQE I+ LA +A Sbjct: 489 GDRITQENIIQLAVNA 504 >ref|ZP_03699692.1| ABC transporter related protein [Lutiella nitroferrum 2002] gb|EEG07374.1| ABC transporter related protein [Lutiella nitroferrum 2002] Length = 497 Score = 581 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 325/496 (65%), Positives = 387/496 (78%), Gaps = 4/496 (0%) Query: 3 STPILQMTGISKSFGATRALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDDGE 62 S+ L+M GI K FGA +AL + LT E+ ALMGENGAGKSTLMK+LSGV+ PD+GE Sbjct: 2 SSIALEMMGIGKRFGANKALDQVRLTAYRHEVLALMGENGAGKSTLMKILSGVYQPDEGE 61 Query: 63 ILLDGKPVSLRDPGASRAAGINLIYQELAVAPNISVAANVFMGSELRTRWGLIDHAAMRK 122 I LDGKPV + P +RAAGINLIYQELAVAPN++VA N+FMG+E R R+G IDH AM + Sbjct: 62 IRLDGKPVRIASPADARAAGINLIYQELAVAPNLTVAENIFMGAEPRARFGRIDHEAMNR 121 Query: 123 RTDAVLRQLGASFRASDRAGRLSIAEQQQVEIARALVHRSRIVIMDEPTAALSERETEHL 182 R + VL +LGA F A+ A RL IA+QQQVEIARAL+H SR++I+DEPTAALS+RE+E L Sbjct: 122 RAEEVLARLGARFSATTPAHRLGIADQQQVEIARALIHDSRVLILDEPTAALSDRESERL 181 Query: 183 FGVVKRLRDEGLAIIYISHRMAEVYALADRVTVLRDGSFVGELAREEIDSERIVQMMVGR 242 F V+ +LRD+G+A+IYISHRM EV LADR+ VLRDG +VG + R E +++VQMMVGR Sbjct: 182 FEVIHQLRDDGIALIYISHRMEEVNRLADRIAVLRDGCYVGSMTRAESTPQKVVQMMVGR 241 Query: 243 SLGEFYQHTRMAPERAAALPVVLQVQDLAGGKVRPASFAVRAGEVLGFAGLVGAGRTELA 302 L +FYQH A PV L+VQDL +VRPAS VRAGEVLG AGLVGAGRTELA Sbjct: 242 PLNDFYQHK----SEVGAGPVRLEVQDLGSHRVRPASLKVRAGEVLGLAGLVGAGRTELA 297 Query: 303 RLLFGADARSGGHVLLDGQVVHIDEPRAAMRAGIAYVPEDRKGQGLFLQMAVGANATMNV 362 RL+FGADAR+ G +LLDG+ V I EP A+R GI Y+PEDRKGQGLFLQ++ AN TMNV Sbjct: 298 RLIFGADARTSGRILLDGREVAIREPLDAIRLGIGYLPEDRKGQGLFLQLSATANTTMNV 357 Query: 363 AGRHSTAGLVRSGALDGVARDAIQRLNVKVAHPGVAVGKLSGGNQQKVLLARWLEIAPKV 422 GRH+ AG++ AL + + AI RL VKV+ VG LSGGNQQK+LLARWL I PKV Sbjct: 358 LGRHARAGVLDHPALKKLTQQAIDRLAVKVSGTEGIVGGLSGGNQQKLLLARWLAIKPKV 417 Query: 423 LILDEPTRGVDIYAKSEIYQLVHKLAEQGVAVVVISSELPEVIGICDRVLVMREGSITGE 482 LILDEPTRGVDI AK EIY++VH+LA QGVAV+ ISSELPEVIG+C RVLVMREGS+ GE Sbjct: 418 LILDEPTRGVDIGAKVEIYRIVHELAAQGVAVICISSELPEVIGLCHRVLVMREGSLAGE 477 Query: 483 LAGAAITQEAIMHLAT 498 LAG A+TQEAIM LAT Sbjct: 478 LAGEAVTQEAIMTLAT 493 >ref|YP_004846474.1| ribose ABC transporter ATP-binding protein [Pseudogulbenkiania sp. NH8B] dbj|BAK76060.1| ribose ABC transporter, ATP-binding protein [Pseudogulbenkiania sp. NH8B] Length = 497 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 326/496 (65%), Positives = 388/496 (78%), Gaps = 4/496 (0%) Query: 3 STPILQMTGISKSFGATRALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDDGE 62 S+ L+M GI K FGA +AL + LT E+ ALMGENGAGKSTLMK+LSGV+ PD+GE Sbjct: 2 SSIALEMMGIGKRFGANKALDQVRLTAYRHEVLALMGENGAGKSTLMKILSGVYQPDEGE 61 Query: 63 ILLDGKPVSLRDPGASRAAGINLIYQELAVAPNISVAANVFMGSELRTRWGLIDHAAMRK 122 I LDGKPV + P +RAAGINLIYQELAVAPN++VA N+FMG+E R R+G IDH AM + Sbjct: 62 IRLDGKPVRIASPADARAAGINLIYQELAVAPNLTVAENIFMGAEPRARFGRIDHDAMNR 121 Query: 123 RTDAVLRQLGASFRASDRAGRLSIAEQQQVEIARALVHRSRIVIMDEPTAALSERETEHL 182 R + VL +LGA F A+ A RL IA+QQQVEIARAL+H SR++I+DEPTAALS+RE+E L Sbjct: 122 RAEEVLARLGARFSATTPAHRLGIADQQQVEIARALIHDSRVLILDEPTAALSDRESERL 181 Query: 183 FGVVKRLRDEGLAIIYISHRMAEVYALADRVTVLRDGSFVGELAREEIDSERIVQMMVGR 242 F V+ +LRD+G+A+IYISHRM EV LADR+ VLRDGS+VG + R E +++VQMMVGR Sbjct: 182 FEVIHQLRDDGIALIYISHRMEEVNRLADRIAVLRDGSYVGSMTRAESTPQKVVQMMVGR 241 Query: 243 SLGEFYQHTRMAPERAAALPVVLQVQDLAGGKVRPASFAVRAGEVLGFAGLVGAGRTELA 302 L +FYQH A PV L+VQDL +VRPAS VRAGEVLG AGLVGAGRTELA Sbjct: 242 PLDDFYQHK----SEVGAGPVRLEVQDLGSHRVRPASLKVRAGEVLGLAGLVGAGRTELA 297 Query: 303 RLLFGADARSGGHVLLDGQVVHIDEPRAAMRAGIAYVPEDRKGQGLFLQMAVGANATMNV 362 RL+FGADAR+ G +LLDG+ V I EP A+R GI Y+PEDRKGQGLFLQ++ AN TMNV Sbjct: 298 RLIFGADARTSGRILLDGREVSIREPLDAIRLGIGYLPEDRKGQGLFLQLSATANTTMNV 357 Query: 363 AGRHSTAGLVRSGALDGVARDAIQRLNVKVAHPGVAVGKLSGGNQQKVLLARWLEIAPKV 422 GRH+ AG++ AL + + AI RL VKV+ VG LSGGNQQK+LLARWL I PKV Sbjct: 358 LGRHARAGVLDHPALKKLTQQAIDRLAVKVSGTEGIVGGLSGGNQQKLLLARWLAIKPKV 417 Query: 423 LILDEPTRGVDIYAKSEIYQLVHKLAEQGVAVVVISSELPEVIGICDRVLVMREGSITGE 482 LILDEPTRGVDI AK EIY++VH+LA QGVAV+ ISSELPEVIG+C RVLVMREGS+ GE Sbjct: 418 LILDEPTRGVDIGAKVEIYRIVHELAAQGVAVICISSELPEVIGLCHRVLVMREGSLAGE 477 Query: 483 LAGAAITQEAIMHLAT 498 LAG A+TQEAIM LAT Sbjct: 478 LAGEAVTQEAIMTLAT 493 >ref|YP_322687.1| ABC transporter-like protein [Anabaena variabilis ATCC 29413] sp|Q3MB44|RBSA_ANAVT RecName: Full=Ribose import ATP-binding protein RbsA gb|ABA21792.1| monosaccharide ABC transporter ATP-binding protein, CUT2 family [Anabaena variabilis ATCC 29413] Length = 517 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 292/503 (58%), Positives = 383/503 (76%), Gaps = 9/503 (1%) Query: 2 TSTPILQMTGISKSFGATRALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDDG 61 T+TP+L+M GI+K F AL ++LTI PGE+HALMGENGAGKSTLMK+L+G + D+G Sbjct: 14 TATPVLEMQGIAKRFHGVPALQGVNLTIYPGEVHALMGENGAGKSTLMKILAGAYIADEG 73 Query: 62 EILLDGKPVSLRDPGASRAAGINLIYQELAVAPNISVAANVFMGSELRTRWGLIDHAAMR 121 EI ++GK V + DPG +R AGINLIYQEL VAPN++V N+FMGSEL TR +D AM Sbjct: 74 EIRINGKGVKITDPGTARQAGINLIYQELNVAPNLTVTENIFMGSEL-TRGQFLDRKAME 132 Query: 122 KRTDAVLRQLGASFRASDRAGRLSIAEQQQVEIARALVHRSRIVIMDEPTAALSERETEH 181 VL LGASF +D G L+IAEQQQVEIARAL SRI++MDEPTAALS+RETE Sbjct: 133 LEAQQVLASLGASFAPTDIVGTLAIAEQQQVEIARALKDNSRILVMDEPTAALSDRETER 192 Query: 182 LFGVVKRLRDEGLAIIYISHRMAEVYALADRVTVLRDGSFVGELAREEIDSERIVQMMVG 241 LF V+++LR++G+AIIYISHRM E+YALADR++VLRDG ++G L REEI +R+VQMMVG Sbjct: 193 LFEVIRKLRNDGIAIIYISHRMEEIYALADRISVLRDGQYIGSLTREEISPQRLVQMMVG 252 Query: 242 RSLGEFYQHTRMAPERAAALPVVLQVQDLAGG-KVRPASFAVRAGEVLGFAGLVGAGRTE 300 RS+ +FY+H R ++ PVVL+V++++ G KV+PASF +RAGE+LG AGLVGAGRTE Sbjct: 253 RSMQDFYEHQR----QSNPGPVVLEVRNISDGRKVQPASFQLRAGEILGLAGLVGAGRTE 308 Query: 301 LARLLFGADARSGGHVLLDGQVVHIDEPRAAMRAGIAYVPEDRKGQGLFLQMAVGANATM 360 ++RL+FGAD + G V L+G+ + I P A+ GI YVPEDRK QGLFL+M+ N + Sbjct: 309 VSRLIFGADRKVSGEVFLNGKKLEIHSPSDAIAVGIGYVPEDRKDQGLFLEMSSRKNIGL 368 Query: 361 NVAGRHSTAGLVRSGALDGVARDAIQRLNVKVAHPGVAVGKLSGGNQQKVLLARWLEIAP 420 N + + G+V G+++ +A DA++ ++++A+ + LSGGNQQK+LLARWL I P Sbjct: 369 NRLKQDANLGIVNWGSVNKIATDAVENFHIRLANLEIRAVDLSGGNQQKLLLARWLAINP 428 Query: 421 KVLILDEPTRGVDIYAKSEIYQLVHKLAEQGVAVVVISSELPEVIGICDRVLVMREGSIT 480 +VL+LDEPTRGVDI AKSEIY+++ L+ QGVA++++SSELPE++G+ DRVLVMREG + Sbjct: 429 RVLMLDEPTRGVDIGAKSEIYRIISDLSAQGVAILMVSSELPEIVGLSDRVLVMREGQLV 488 Query: 481 GEL---AGAAITQEAIMHLATDA 500 GEL G ITQE IMH AT A Sbjct: 489 GELDNSIGKEITQENIMHYATGA 511