BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2510.p (287 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774151.1| LysR family transcription regulator protein ... 429 e-118 ref|YP_004687743.1| transcriptional regulator LysR family [Cupri... 161 1e-37 ref|YP_296124.1| regulatory protein, LysR:LysR, substrate-bindin... 160 3e-37 ref|YP_003449583.1| transcriptional regulator [Azospirillum sp. ... 155 5e-36 ref|ZP_02387637.1| transcriptional regulator, LysR family protei... 154 2e-35 >ref|YP_003774151.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62243.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 283 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 233/283 (82%), Positives = 253/283 (89%) Query: 5 LDADWESLRSFAAFVEAGSLSGAARALGVTHATIGRRLQLLEEALQGPLYLRRAEDVELT 64 + ADWESLRSFAAFV+AGS SGAAR LGVTHATIGRRLQ LE+ L PL++RRA+D+ELT Sbjct: 1 MHADWESLRSFAAFVDAGSFSGAARVLGVTHATIGRRLQQLEQTLAAPLFIRRADDIELT 60 Query: 65 RLGESVLTAARAMQEQTRQLARTLAGGDLRLEGKLRLACTDAIGTMFLAPRLPALLEQWP 124 RLGESVL AARAMQ+QTRQLARTLAG DLR+EGKLRLACTDA+GT+FLAPRLP+LL+QWP Sbjct: 61 RLGESVLAAARAMQDQTRQLARTLAGEDLRMEGKLRLACTDAMGTLFLAPRLPSLLQQWP 120 Query: 125 ALDVEFALGHQTLSLARREADLALRFGKPQDGELIARPLGAVRFYLCGTADNVALWRRAR 184 ALD+E A+GHQTLSLARREADLALRF +PQDGELIAR LG VRFYLCGTAD VA WR R Sbjct: 121 ALDIELAMGHQTLSLARREADLALRFARPQDGELIARRLGVVRFYLCGTADQVAAWRHQR 180 Query: 185 KTAPFVAYDDGVPDIPETRWIADHAAGNPVRLRSTSLVAQCMAARAGVGLALLPSYLLAP 244 +AP + YDD VPDIPETRW+A HA GNPVRLRS SLVAQCMAARAGVGLALLPSYLLAP Sbjct: 181 GSAPVIGYDDSVPDIPETRWLAAHADGNPVRLRSASLVAQCMAARAGVGLALLPSYLLAP 240 Query: 245 ELQTVESAPQLQRELWAVFHRDLKTLPRLRAVLAWLQDCCAQL 287 ELQTVES PQL RELWAVFHRDLK LPRLRAVL WLQ CC +L Sbjct: 241 ELQTVESTPQLVRELWAVFHRDLKALPRLRAVLEWLQACCGEL 283 >ref|YP_004687743.1| transcriptional regulator LysR family [Cupriavidus necator N-1] gb|AEI81705.1| transcriptional regulator LysR family [Cupriavidus necator N-1] Length = 287 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 109/283 (38%), Positives = 152/283 (53%), Gaps = 13/283 (4%) Query: 8 DWESLRSFAAFVEAGSLSGAARALGVTHATIGRRLQLLEEALQGPLYLRRAEDVELTRLG 67 DWE LR F+ F + GSLSGAAR L V HAT+ RR+ LE AL L RR LT G Sbjct: 3 DWEDLRHFSVFAQEGSLSGAARRLKVDHATVARRISALEAALCLKLVDRRPRAYLLTGEG 62 Query: 68 ESVLTAARAMQEQTRQLARTLAGGDLRLEGKLRLACTDAIGTMFLAPRLPALLEQWPALD 127 E V M++++ + RT A G + G + ++ ++ +AP+L L EQ PAL Sbjct: 63 ERVAALGARMEQESFAVERTAAAGQTGVSGDVTISAPPSMAAAVIAPQLGRLREQHPALR 122 Query: 128 VEFALGHQTLSLARREADLALRFGKPQDGELIARPLGAVRFYLCGTADNVALWRRARKTA 187 + SL+RREADLA+R +P +G+L+ R LG V F L +A T Sbjct: 123 ICLTGTTHMASLSRREADLAVRLTRPSEGDLVVRKLGVVVFSLYSSA------SYLSATT 176 Query: 188 P----FVAYDDGVPDIPETRWIADHAAGNPVRLRSTSLVAQCMAARAGVGLALLPSYLLA 243 P F+AYDD + P+ W+ A P+ + S L Q AARAGVG+A LP +L Sbjct: 177 PSDYGFIAYDDSMEGSPQQNWLKQQAGTRPIVMVSNELEIQAAAARAGVGIAALPYFLGD 236 Query: 244 PE--LQTVES-APQLQRELWAVFHRDLKTLPRLRAVLAWLQDC 283 + LQ V S + +RE+W H D++ PR++AV+ +L C Sbjct: 237 RDDGLQRVRSKGKRFEREIWLAVHADIRRAPRIQAVMQFLGSC 279 >ref|YP_296124.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia eutropha JMP134] gb|AAZ61280.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134] Length = 281 Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats. Identities = 102/280 (36%), Positives = 150/280 (53%), Gaps = 9/280 (3%) Query: 9 WESLRSFAAFVEAGSLSGAARALGVTHATIGRRLQLLEEALQGPLYLRRAEDVELTRLGE 68 W+ L + + + AGS S AR L +THAT RR++ LEEAL P+ R ELT G Sbjct: 8 WDDLLTLSTLIRAGSYSACARELDITHATAIRRIRRLEEALGKPVATRSEGAFELTSAGR 67 Query: 69 SVLTAARAMQEQTRQLARTLAGGDLRLEGKLRLACTDAIGTMFLAPRLPALLEQWPALDV 128 S LTAAR M++ +L R + G + G +R+A T A+G+ FL PRLP L P + V Sbjct: 68 SALTAARQMEQSAGRLLREIEGAGSGVSGVVRIAATAALGSHFLTPRLPGLYAAHPDIVV 127 Query: 129 EFALGHQTLSLARREADLALRFGKPQDGELIARPLGAVRFYLCGTADNVALWRRARKTAP 188 L + SLARR A LA+R +P++ +++A+ +G VRF L G+A + P Sbjct: 128 RLELDDRVASLARRHAHLAIRLARPKEDDVVAQRVGTVRFGLYGSAS-----VPMDDSTP 182 Query: 189 FVAYDDGVPDIPETRWIADHAAGNPVRLRSTSLVAQCMAARAGVGLALLPSYLLAPE--L 246 A D DIPE W A + + +++A C RAG+G ALLP Y+ + L Sbjct: 183 LCALLDEGYDIPEATWPLH--AKRRIAFHANNMLAICEGVRAGLGTALLPHYVAREDAGL 240 Query: 247 QTVESAPQLQRELWAVFHRDLKTLPRLRAVLAWLQDCCAQ 286 + + P++ RE+W + + + R R V+ WL D +Q Sbjct: 241 RLLHEVPEVMREIWLAYPTEFRGASRFRPVIEWLADTLSQ 280 >ref|YP_003449583.1| transcriptional regulator [Azospirillum sp. B510] dbj|BAI73039.1| transcriptional regulator [Azospirillum sp. B510] Length = 314 Score = 155 bits (393), Expect = 5e-36, Method: Composition-based stats. Identities = 109/260 (41%), Positives = 139/260 (53%), Gaps = 13/260 (5%) Query: 8 DWESLRSFAAFVEAGSLSGAARALGVTHATIGRRLQLLEEALQGPLYLRRAEDVELTRLG 67 DW+ LR F GSLS AAR L ++HAT+GRRL LE L L RR + LT G Sbjct: 30 DWDDLRVFLELARTGSLSAAARGLRLSHATVGRRLAALEATLGRGLMERRPDGYVLTGEG 89 Query: 68 ESVLTAARAMQEQTRQLARTLAGGDLRLEGKLRLACTDAIGTMFLAPRLPALLEQWPALD 127 ESV A AM E+ Q R GGD L G +RL T A+ +FL PRL L PALD Sbjct: 90 ESVRALAEAMDERA-QAIRRREGGDTGLTGTVRLTMTQALADLFLIPRLGPLRAANPALD 148 Query: 128 VEFALGHQTLSLARREADLALRFGKPQDGELIARPLGAVRFYLCGTADNVALWRRARKTA 187 +E + ++TLSLARREADLA+R +PQ G+L+ R L + + L+ Sbjct: 149 LEIIVDNRTLSLARREADLAIRLAQPQRGDLVGRRLATLGY---------GLYAAPGAPD 199 Query: 188 PFVAYDDGVPDIPETRWIADHAAGNPVRLRSTSLVAQCMAARAGVGLALLPSYLL--APE 245 +AYDD + ++PE W+ H G V R S+ Q AA AG G ALLP L P Sbjct: 200 TLIAYDDSMAELPEALWLDRHGGGRRVAFRCNSVQGQLAAAVAGFGTALLPCMLADGVPG 259 Query: 246 LQTVE-SAPQLQRELWAVFH 264 L+ + + P L RE W + H Sbjct: 260 LERLAPTGPPLTREAWLLVH 279 >ref|ZP_02387637.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis Bt4] Length = 294 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 99/278 (35%), Positives = 147/278 (52%), Gaps = 5/278 (1%) Query: 8 DWESLRSFAAFVEAGSLSGAARALGVTHATIGRRLQLLEEALQGPLYLRRAEDVELTRLG 67 DWE+LR F A G+LSGAAR LGV HAT+GRR+ +LE LQ L R A LT +G Sbjct: 3 DWENLRHFLAVARVGTLSGAARELGVDHATVGRRVTMLETELQTRLVERFARHCTLTGVG 62 Query: 68 ESVLTAARAMQEQTRQLARTLAGGDLRLEGKLRLACTDAIGTMFLAPRLPALLEQWPALD 127 + A M+ + RT+ +L G + ++ + T F A A E++P + Sbjct: 63 RRMFEIASTMEAGAFAIERTVQAERSQLTGMVVVSAPPVLVTNFFAKETTAFRERYPGIQ 122 Query: 128 VEFALGHQTLSLARREADLALRFGKPQDGELIARPLGAVRFYLCGTADNVALWRRARKTA 187 + + Q++SL+RREAD+A+R +P++ + + R +GA+ F L L AR Sbjct: 123 LALSGQAQSVSLSRREADVAVRLVRPKEADNVVRRIGAMEFALYAARRYPYLQEPAR--W 180 Query: 188 PFVAYDDGVPDIPETRWIADHAAGNPVRLRSTSLVAQCMAARAGVGLALLPSYLLAPELQ 247 FV YDD D+P+ RW+ A + R + +Q A RAG G+ +LP +L A Sbjct: 181 EFVGYDDPFDDMPQQRWLKKVAGKRAIACRLGDITSQYAATRAGAGIGMLPRFLPAASDD 240 Query: 248 TVE---SAPQLQRELWAVFHRDLKTLPRLRAVLAWLQD 282 VE A R++W V HR LK P +RAV+ ++ + Sbjct: 241 LVELDVDAEPFARDIWLVVHRQLKASPPIRAVMDFIAE 278