BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2506.p (569 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774147.1| methyl-accepting chemotaxis transducer trans... 675 0.0 ref|ZP_08274777.1| Methyl-accepting chemotaxis protein I (serine... 448 e-123 ref|YP_003778030.1| methyl-accepting chemotaxis transducer trans... 345 2e-92 ref|YP_314418.1| chemotaxis sensory transducer [Thiobacillus den... 344 3e-92 ref|ZP_04764380.1| methyl-accepting chemotaxis sensory transduce... 341 2e-91 >ref|YP_003774147.1| methyl-accepting chemotaxis transducer transmembrane protein I [Herbaspirillum seropedicae SmR1] gb|ADJ62239.1| methyl-accepting chemotaxis transducer transmembrane protein I [Herbaspirillum seropedicae SmR1] Length = 547 Score = 675 bits (1742), Expect = 0.0, Method: Composition-based stats. Identities = 465/547 (85%), Positives = 500/547 (91%) Query: 23 MKNLKIGHRLGLGFAAVLVLLVAVATFGLQQVSRLNDRIVFLTSVDEGKLEALSKVQFAV 82 MKNLKIGHRLGLGFAAVL+LLVAVA FGLQQVSRLNDRIVFLTSVDEGKLEALSKVQFAV Sbjct: 1 MKNLKIGHRLGLGFAAVLILLVAVAAFGLQQVSRLNDRIVFLTSVDEGKLEALSKVQFAV 60 Query: 83 GLRAIAARNLTLVNGAAEQKGDLDLVGSAQKDIESGMAELTRLMQDPATTPQERDMLEQL 142 GLRAIAARNLTLV AA+QK DLDLVGS+Q+DI++GMAEL RLMQ PA++PQER+MLE+L Sbjct: 61 GLRAIAARNLTLVQSAADQKNDLDLVGSSQQDIDAGMAELGRLMQHPASSPQEREMLEKL 120 Query: 143 RKLEAQYLPVAVNIVKLATSQQNEAARTSLVKDCMPILNRVIAHVEQFNKLLRKNSAANV 202 R+LEAQYLPVAVNIVKLATSQQ EAAR SLVKDCMPILNRVIA VEQFNKLLRKNS ANV Sbjct: 121 RQLEAQYLPVAVNIVKLATSQQTEAARASLVKDCMPILNRVIAQVEQFNKLLRKNSEANV 180 Query: 203 DAAEAAYAMAKWTMMGASMAALVLGGLIAWLLTRSISRPLAQAVSVAQSVQSGDLGSRIE 262 + AEAAY +AKWTM+ AS+AAL LGG++AWLLTRSISRPLAQAVSVAQSVQSGDLGSRIE Sbjct: 181 EEAEAAYTLAKWTMLAASLAALTLGGMVAWLLTRSISRPLAQAVSVAQSVQSGDLGSRIE 240 Query: 263 VTSKDELGQLMAALKGMNDSLVAIVGEVRHGTDTIAVASDEIKRGNMDLSHRTEQQAGSL 322 VTSKDELGQLM+ALKGMNDSLV IVGEVR GTDTIAVASDEIK+GNMDLS+RTEQQAGSL Sbjct: 241 VTSKDELGQLMSALKGMNDSLVNIVGEVRQGTDTIAVASDEIKQGNMDLSNRTEQQAGSL 300 Query: 323 QETASAMEQLTATVKQTSDNAREAKRLADNASDVATKGGAAVNRVVETMHAISTSSHKIV 382 QETASAMEQLTATVKQ +DNAREA RLADNAS VA +GGAAV RVV+TM++IS SSHKIV Sbjct: 301 QETASAMEQLTATVKQNADNAREANRLADNASQVAARGGAAVGRVVDTMNSISASSHKIV 360 Query: 383 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVAAKEIEALIN 442 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAVAAKEIEALIN Sbjct: 361 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAVAAKEIEALIN 420 Query: 443 ESVAKVATGEKQVSEAGSTMDEVVRSIQSVTHIVQDISAASTEQTAGLEQINTAVARIDE 502 ESVAKV TGEKQVSEAGSTM EVV SI+SVTHI+ DISAAS EQT+GLEQIN AVA+IDE Sbjct: 421 ESVAKVVTGEKQVSEAGSTMHEVVESIKSVTHIMHDISAASAEQTSGLEQINRAVAQIDE 480 Query: 503 TTQQNAALVEQAAAAAASMQQQSVALTDVVSIFKLTAEQAGPTAVRGPQQAAVQYSQDTA 562 TQQNAALVEQAAAAAASMQQQSVALT+VVSIFKL+ Q P +R ++ S Sbjct: 481 ATQQNAALVEQAAAAAASMQQQSVALTEVVSIFKLSRAQNAPQHLRSAEREDAAVSGPVH 540 Query: 563 MPALSYA 569 M ALSYA Sbjct: 541 MEALSYA 547 >ref|ZP_08274777.1| Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) [Oxalobacteraceae bacterium IMCC9480] gb|EGF31751.1| Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) [Oxalobacteraceae bacterium IMCC9480] Length = 578 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 304/526 (57%), Positives = 390/526 (74%), Gaps = 1/526 (0%) Query: 23 MKNLKIGHRLGLGFAAVLVLLVAVATFGLQQVSRLNDRIVFLTSVDEGKLEALSKVQFAV 82 MKNLKIG RLG+ FA +L+L + V GL Q+ L++R+ F+ V +++ L+ + AV Sbjct: 1 MKNLKIGSRLGMAFAVLLLLQLIVTGVGLYQIGGLSERMSFILDVANARIDVLNDIDSAV 60 Query: 83 GLRAIAARNLTLVNGAAEQKGDLDLVGSAQKDIESGMAELTRLMQDPA-TTPQERDMLEQ 141 RAIAARNL L+ ++Q+ D+ LV +Q I+ G + L LM+DPA T+ + R MLE+ Sbjct: 61 SQRAIAARNLALLPDPSKQQADVTLVKESQVAIDKGFSRLAELMKDPAITSDKSRQMLEK 120 Query: 142 LRKLEAQYLPVAVNIVKLATSQQNEAARTSLVKDCMPILNRVIAHVEQFNKLLRKNSAAN 201 LR LEA YLP+A N+V LATSQ+ E A + +DCMP+L +V AH+ F+K L++ +A + Sbjct: 121 LRSLEATYLPIANNVVALATSQKTELAIKVITQDCMPVLLQVHAHIAAFDKSLKEETAVS 180 Query: 202 VDAAEAAYAMAKWTMMGASMAALVLGGLIAWLLTRSISRPLAQAVSVAQSVQSGDLGSRI 261 V+AA+ A +A W ++ S +LV G L+ W + SI+ PL AV VA+ V +GDL SRI Sbjct: 181 VNAAKTASQIAVWELLIISAFSLVAGALLGWRIKLSITVPLNAAVDVARRVAAGDLTSRI 240 Query: 262 EVTSKDELGQLMAALKGMNDSLVAIVGEVRHGTDTIAVASDEIKRGNMDLSHRTEQQAGS 321 EVTSKDE GQL+ ALK MNDSL IVG+VR GTDTIA AS EI GNMDLS RTEQQA S Sbjct: 241 EVTSKDETGQLLGALKDMNDSLTGIVGKVRQGTDTIATASAEIAAGNMDLSSRTEQQASS 300 Query: 322 LQETASAMEQLTATVKQTSDNAREAKRLADNASDVATKGGAAVNRVVETMHAISTSSHKI 381 L+ETAS+ME+LT T KQ +DNAR+A +LA +AS+VA KGGA V++VV TM +I+ S+ KI Sbjct: 301 LEETASSMEELTGTSKQNADNARQANKLASSASEVAVKGGAVVSQVVSTMGSINESAKKI 360 Query: 382 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVAAKEIEALI 441 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAK+I+ LI Sbjct: 361 ADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKDIKGLI 420 Query: 442 NESVAKVATGEKQVSEAGSTMDEVVRSIQSVTHIVQDISAASTEQTAGLEQINTAVARID 501 N+SV KV G + V +AG++M E+V S++ VT I+ +I+AAS EQTAG+EQ+N A++++D Sbjct: 421 NDSVEKVDAGTRLVDQAGASMSEIVESVRRVTDIISEIAAASEEQTAGIEQVNQAISQMD 480 Query: 502 ETTQQNAALVEQAAAAAASMQQQSVALTDVVSIFKLTAEQAGPTAV 547 E TQQNAALVEQAAAAA S+Q QS L D VS FKL TA+ Sbjct: 481 EVTQQNAALVEQAAAAAESLQDQSGNLADTVSAFKLDNHGMAGTAI 526 >ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ66122.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 259/518 (50%), Positives = 345/518 (66%), Gaps = 10/518 (1%) Query: 23 MKNLKIGHRLGLGFAAVLVLLVAVATFGLQQVSRLNDRIVFLTSVDEGKLEALSKVQFAV 82 MKNLKIG RL +GF A+L+L+ + G+ ++ + D + D+ AL K + AV Sbjct: 1 MKNLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGD------ATDDMTRIALKKERDAV 54 Query: 83 GLRAIAARNLTLVNGAAEQKGDLDLVGSAQKDIESGMAELTRLMQD---PATTPQERDML 139 A N + A + D QK I++ A +++L ++ T +E+ + Sbjct: 55 QWHAAIKEN-GVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLF 113 Query: 140 EQLRKLEAQYLPVAVNIVKLATSQQNEAARTSLVKDCMPILNRVIAHVEQFNKLLRKNSA 199 +++ KL A Y +I + T+ + AR + +++ V ++ ++ Sbjct: 114 DEVGKLRAAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVID 173 Query: 200 ANVDAAEAAYAMAKWTMMGASMAALVLGGLIAWLLTRSISRPLAQAVSVAQSVQSGDLGS 259 A Y + ++ +VLG +AWLLTRSI+RPL QAV++A++V +GDL S Sbjct: 174 QTAAAINRDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTS 233 Query: 260 RIEVTSKDELGQLMAALKGMNDSLVAIVGEVRHGTDTIAVASDEIKRGNMDLSHRTEQQA 319 RI+ +S+DE G+L+AALK MN +L+ IVG VR GT+TI AS EI GN+DLS RTE QA Sbjct: 234 RIDSSSRDETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQA 293 Query: 320 GSLQETASAMEQLTATVKQTSDNAREAKRLADNASDVATKGGAAVNRVVETMHAISTSSH 379 GSL+ETASAMEQLT+TVKQ +DNAR+A LA +AS VAT+GGA V++VV TM AI SS Sbjct: 294 GSLEETASAMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQ 353 Query: 380 KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVAAKEIEA 439 KI DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEI+ Sbjct: 354 KIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQ 413 Query: 440 LINESVAKVATGEKQVSEAGSTMDEVVRSIQSVTHIVQDISAASTEQTAGLEQINTAVAR 499 LI++SV KV G + V+ AG TM EVV+S+ VT +V++I+ AS EQ+ G+EQ+N A+ Sbjct: 414 LIDDSVEKVDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITH 473 Query: 500 IDETTQQNAALVEQAAAAAASMQQQSVALTDVVSIFKL 537 IDETTQQNAALVEQAAAAA SMQ Q+ +LTD VS+F+L Sbjct: 474 IDETTQQNAALVEQAAAAARSMQDQAASLTDAVSVFRL 511 >ref|YP_314418.1| chemotaxis sensory transducer [Thiobacillus denitrificans ATCC 25259] gb|AAZ96613.1| chemotaxis sensory transducer [Thiobacillus denitrificans ATCC 25259] Length = 586 Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 258/528 (48%), Positives = 347/528 (65%), Gaps = 9/528 (1%) Query: 25 NLKIGHRLGLGFAAVLVLLVAVATFGLQQVSRLNDRIVFLTSVDEGKLEALSKVQFAVGL 84 N+KIG RLG GF AVL+L +AVA GL +S++ + + GK++ ++ ++ A+ Sbjct: 39 NMKIGTRLGTGFGAVLLLTLAVAGLGLAYLSQIQRHVDDVAGSRMGKIKLVNGMRDAMQS 98 Query: 85 RAIAARNLTLVN--GAAEQKGDLDLVGSAQKDIESGMAELTRLMQDPATTPQERDMLEQL 142 A+A RNL L+ GA ++ L A+ A+ + +P E + +++ Sbjct: 99 GAVAVRNLVLLTDEGAMAEEAQRFLAHRAR------YADAAAKLATAVRSPAETSVYDKI 152 Query: 143 RKLEAQYLPVAVNIVKLATSQQNEAARTSLVKDCMPILNRVIAHVEQFNKLLRKNSAANV 202 A+ P + + A EA R LV++ P+ + +A +E+ L + +A + Sbjct: 153 AAARARTEPALDKVREFAMGNPLEATRV-LVEEVRPLQQQWLAALEEMAALQERGAAVAM 211 Query: 203 DAAEAAYAMAKWTMMGASMAALVLGGLIAWLLTRSISRPLAQAVSVAQSVQSGDLGSRIE 262 A AYA A ++ S+ A+V G +AW +TRS++ P+ +AV++A+SV GDL +R E Sbjct: 212 VDAADAYANAFSILLVLSLGAVVTGAGVAWRITRSVTEPVRKAVALARSVAGGDLTARGE 271 Query: 263 VTSKDELGQLMAALKGMNDSLVAIVGEVRHGTDTIAVASDEIKRGNMDLSHRTEQQAGSL 322 + DE GQL AL GM SL IV EVRH TDTIAVAS EI GN DLS RTE QA SL Sbjct: 272 SRADDEFGQLQRALTGMTASLAGIVAEVRHTTDTIAVASREIASGNADLSSRTESQASSL 331 Query: 323 QETASAMEQLTATVKQTSDNAREAKRLADNASDVATKGGAAVNRVVETMHAISTSSHKIV 382 +ETAS+ME+LT+TV+Q ++NAR+A +L + +DVA KGG V +VV+TM +I SS KI Sbjct: 332 EETASSMEELTSTVRQNAENARQANQLVVSTADVAVKGGEVVGQVVDTMASIKDSSRKIS 391 Query: 383 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVAAKEIEALIN 442 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AAKEI++LI Sbjct: 392 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAGAAKEIKSLIE 451 Query: 443 ESVAKVATGEKQVSEAGSTMDEVVRSIQSVTHIVQDISAASTEQTAGLEQINTAVARIDE 502 +SV KV G K V EAG TMDE+V S++ VT I+ +I+AAS EQ+AG+EQ+N AV ++DE Sbjct: 452 DSVGKVDAGSKLVDEAGKTMDEIVSSVKRVTDIMSEIAAASQEQSAGIEQVNQAVGQMDE 511 Query: 503 TTQQNAALVEQAAAAAASMQQQSVALTDVVSIFKLTAEQAGPTAVRGP 550 TQQNAALVE+AAAAA S+Q+Q+ L D VS+FKL V P Sbjct: 512 MTQQNAALVEEAAAAAESLQEQAAKLADAVSVFKLDGGDGERLGVAAP 559 >ref|ZP_04764380.1| methyl-accepting chemotaxis sensory transducer [Acidovorax delafieldii 2AN] gb|EER58821.1| methyl-accepting chemotaxis sensory transducer [Acidovorax delafieldii 2AN] Length = 518 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 258/516 (50%), Positives = 346/516 (67%), Gaps = 6/516 (1%) Query: 25 NLKIGHRLGLGFAAVLVLLVAVATFGLQQVSRLNDRIVFLTSVDEGKLEALSKVQFAVGL 84 NLKIG RL LGF+ VL+ L A+ G+ + L R+ + + + KL A + + + Sbjct: 5 NLKIGTRLALGFSVVLLFLAAILGMGVYSLGHLQSRMEEMVNSNNVKLAAANTMLDQIRD 64 Query: 85 RAIAARNLTLVNGAAEQKGDLDLVGSAQKDIESGMAELTRLMQDPATTPQERDMLEQLRK 144 + LV A ++ L V A+ + A L +L+ + Q + L ++ Sbjct: 65 IYAIGAMVVLVPDEAGKQAQLKQVADARAKYGAAKATLEKLV----ASEQGKAALAKVDA 120 Query: 145 LEAQYLPVAVNIVKLATSQQNEAARTSLVKDCMPILNRVIAHVEQFNKL-LRKNSAANVD 203 A +P++ + LA A L+ P + + + L R +S AN D Sbjct: 121 ALAAAVPLSNQLFDLAVKNMTAEATEHLMTKAGPAMRAALDQLNNLADLQTRLSSQANAD 180 Query: 204 AAEAAYAMAKWTMMGASMAALVLGGLIAWLLTRSISRPLAQAVSVAQSVQSGDLGSRIEV 263 A EA Y A+ M+G + A++ G IAW +TRSI+RP+ AV VA++V GDL SRI+V Sbjct: 181 A-EAEYRSARNWMIGLGLLAILAGVAIAWHITRSITRPITHAVEVARTVADGDLSSRIDV 239 Query: 264 TSKDELGQLMAALKGMNDSLVAIVGEVRHGTDTIAVASDEIKRGNMDLSHRTEQQAGSLQ 323 S DE GQLM AL+ MNDSL +VGEVR G D++A A+ +I GN DLS RTE+QA SL+ Sbjct: 240 VSTDETGQLMRALQHMNDSLAKVVGEVRSGADSMATATSQIAAGNQDLSSRTEEQASSLE 299 Query: 324 ETASAMEQLTATVKQTSDNAREAKRLADNASDVATKGGAAVNRVVETMHAISTSSHKIVD 383 ETA++ME+LT+TV+Q +DNAR+A +LA AS VA KGG V++VV+TM AI++SSHKIVD Sbjct: 300 ETAASMEELTSTVRQNADNARQANQLALTASSVAVKGGDVVSQVVQTMDAINSSSHKIVD 359 Query: 384 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVAAKEIEALINE 443 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEI+ LI++ Sbjct: 360 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAEAAKEIKVLIDD 419 Query: 444 SVAKVATGEKQVSEAGSTMDEVVRSIQSVTHIVQDISAASTEQTAGLEQINTAVARIDET 503 SV+KV G +QV EAG TM+E+V S++ VT I+ +I+AAS EQT+G+EQ+N A+A++D+ Sbjct: 420 SVSKVEQGSQQVGEAGKTMEEIVSSVRRVTDIMGEITAASQEQTSGIEQVNQAIAQMDQV 479 Query: 504 TQQNAALVEQAAAAAASMQQQSVALTDVVSIFKLTA 539 TQQNAALVE+AAAAA S+Q Q+ L+ VVS+FKL Sbjct: 480 TQQNAALVEEAAAAADSLQGQAGHLSQVVSVFKLAG 515