BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2495.p         (184 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774138.1| chloride-channel protein [Herbaspirillum ser...   237   7e-61
ref|YP_004754147.1| Cl- channel, voltage gated [Collimonas fungi...   172   2e-41
ref|YP_002232133.1| putative chloride-channel protein [Burkholde...   164   8e-39
ref|YP_368332.1| Cl- channel, voltage gated [Burkholderia sp. 38...   163   1e-38
ref|YP_001894702.1| chloride channel core [Burkholderia phytofir...   163   1e-38

>ref|YP_003774138.1| chloride-channel protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ62230.1| chloride-channel protein [Herbaspirillum seropedicae SmR1]
          Length = 441

 Score =  237 bits (604), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 138/140 (98%), Positives = 139/140 (99%)

Query: 1   MTIGREGPTVQIGAAIMYNLRRLYPAGYEHMERRLILAGAAAGLAAAFNTPLAGIVFAIE 60
           MTIGREGPTVQIGAAIMYNLRRLYPAGYEHMERRLILAGAAAGLAAAFNTPLAGIVFAIE
Sbjct: 137 MTIGREGPTVQIGAAIMYNLRRLYPAGYEHMERRLILAGAAAGLAAAFNTPLAGIVFAIE 196

Query: 61  ELSRSFEQRASGVVITTIIFAGLVALSINGNYTYFGSIAFPGETSGRLILAVIVTAVLMG 120
           ELSRSFEQRASGVVITTIIFAGLVALSINGNYTYFGSIAFPGETSGRLILAVIVTAVLMG
Sbjct: 197 ELSRSFEQRASGVVITTIIFAGLVALSINGNYTYFGSIAFPGETSGRLILAVIVTAVLMG 256

Query: 121 VAGGLFCWLILNPTRWIPAS 140
           VAGGLFCWLILNPTRWIP +
Sbjct: 257 VAGGLFCWLILNPTRWIPPA 276


>ref|YP_004754147.1| Cl- channel, voltage gated [Collimonas fungivorans Ter331]
 gb|AEK63324.1| Cl- channel, voltage gated [Collimonas fungivorans Ter331]
          Length = 461

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 101/138 (73%), Positives = 115/138 (83%)

Query: 2   TIGREGPTVQIGAAIMYNLRRLYPAGYEHMERRLILAGAAAGLAAAFNTPLAGIVFAIEE 61
           TIGREGPTVQ+GAA+M+NLRRLYP     +ERRLILAGAAAGL+AAFNTPLAGIVFAIEE
Sbjct: 136 TIGREGPTVQVGAALMFNLRRLYPRASAALERRLILAGAAAGLSAAFNTPLAGIVFAIEE 195

Query: 62  LSRSFEQRASGVVITTIIFAGLVALSINGNYTYFGSIAFPGETSGRLILAVIVTAVLMGV 121
           L+RSFE RASGVVIT IIFAG VAL +NGNYTYFG+I      +  + LAV+VT +L GV
Sbjct: 196 LTRSFEHRASGVVITVIIFAGAVALGLNGNYTYFGTIQIDSALTNMVALAVLVTGILTGV 255

Query: 122 AGGLFCWLILNPTRWIPA 139
           AGG+F WL+LN  RWIPA
Sbjct: 256 AGGMFGWLLLNTKRWIPA 273


>ref|YP_002232133.1| putative chloride-channel protein [Burkholderia cenocepacia J2315]
 emb|CAR53345.1| putative chloride-channel protein [Burkholderia cenocepacia J2315]
          Length = 520

 Score =  164 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 95/138 (68%), Positives = 114/138 (82%)

Query: 2   TIGREGPTVQIGAAIMYNLRRLYPAGYEHMERRLILAGAAAGLAAAFNTPLAGIVFAIEE 61
           TIGREGPTVQ+GAA+M+NLRR YP     +ER+L+LAGAAAGL+AAFNTPLAGIVFAIEE
Sbjct: 130 TIGREGPTVQVGAALMFNLRRFYPRSNAQIERQLVLAGAAAGLSAAFNTPLAGIVFAIEE 189

Query: 62  LSRSFEQRASGVVITTIIFAGLVALSINGNYTYFGSIAFPGETSGRLILAVIVTAVLMGV 121
           L+RSF  RASGV+IT II AG+VAL +NGNYTYFG+I         L +AV+VTA++ G+
Sbjct: 190 LTRSFSARASGVLITAIILAGVVALGLNGNYTYFGTIDTGLHFPKLLAVAVLVTAIVTGI 249

Query: 122 AGGLFCWLILNPTRWIPA 139
           AGGLFCWL+LN  RW+PA
Sbjct: 250 AGGLFCWLLLNTGRWLPA 267


>ref|YP_368332.1| Cl- channel, voltage gated [Burkholderia sp. 383]
 gb|ABB07688.1| Cl- channel, voltage gated [Burkholderia sp. 383]
          Length = 513

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 96/138 (69%), Positives = 114/138 (82%)

Query: 2   TIGREGPTVQIGAAIMYNLRRLYPAGYEHMERRLILAGAAAGLAAAFNTPLAGIVFAIEE 61
           TIGREGPTVQ+GAA+M+NLRR YP     +ER+L+LAGAAAGL+AAFNTPLAGIVFAIEE
Sbjct: 130 TIGREGPTVQVGAALMFNLRRFYPRSNAQIERQLVLAGAAAGLSAAFNTPLAGIVFAIEE 189

Query: 62  LSRSFEQRASGVVITTIIFAGLVALSINGNYTYFGSIAFPGETSGRLILAVIVTAVLMGV 121
           L+RSF  RASGV+IT II AG+VAL +NGNYTYFG+I         L LAV+VTA++ G+
Sbjct: 190 LTRSFSARASGVLITAIILAGVVALGLNGNYTYFGTIDAGPHFPKLLALAVLVTAIVTGI 249

Query: 122 AGGLFCWLILNPTRWIPA 139
           AGGLFCWL+LN  RW+PA
Sbjct: 250 AGGLFCWLLLNTGRWLPA 267


>ref|YP_001894702.1| chloride channel core [Burkholderia phytofirmans PsJN]
 gb|ACD15478.1| Chloride channel core [Burkholderia phytofirmans PsJN]
          Length = 474

 Score =  163 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 96/139 (69%), Positives = 116/139 (83%)

Query: 1   MTIGREGPTVQIGAAIMYNLRRLYPAGYEHMERRLILAGAAAGLAAAFNTPLAGIVFAIE 60
           +TIGREGPTVQ+GAA+M+NLRRLYP     +ER+L+LAGAAAGL+AAFNTPLAGIVFAIE
Sbjct: 128 LTIGREGPTVQVGAALMFNLRRLYPRSNALIERQLVLAGAAAGLSAAFNTPLAGIVFAIE 187

Query: 61  ELSRSFEQRASGVVITTIIFAGLVALSINGNYTYFGSIAFPGETSGRLILAVIVTAVLMG 120
           EL+RSFE RASGV+IT II AG++AL +NGNYTYFG+I         L LAV++TAV+ G
Sbjct: 188 ELTRSFEARASGVLITAIIIAGVIALGLNGNYTYFGTIQIGAHFPNVLALAVLLTAVVTG 247

Query: 121 VAGGLFCWLILNPTRWIPA 139
           +AGG+F WL+LN  RWIPA
Sbjct: 248 LAGGVFGWLLLNTARWIPA 266