BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2492.p (442 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_560616.1| D-amino-acid dehydrogenase [Burkholderia xenovo... 508 e-142 ref|YP_001897203.1| D-amino-acid dehydrogenase [Burkholderia phy... 507 e-141 ref|ZP_03268815.1| D-amino-acid dehydrogenase [Burkholderia sp. ... 506 e-141 ref|ZP_06842394.1| D-amino-acid dehydrogenase [Burkholderia sp. ... 506 e-141 ref|YP_004229702.1| D-amino-acid dehydrogenase [Burkholderia sp.... 497 e-138 >ref|YP_560616.1| D-amino-acid dehydrogenase [Burkholderia xenovorans LB400] gb|ABE32564.1| D-amino-acid dehydrogenase [Burkholderia xenovorans LB400] Length = 421 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 254/372 (68%), Positives = 297/372 (79%) Query: 37 SAGNAGVIAPGYVTPWAAPGMPGKILKYLFKASSPVVFRPRMSARQWRWISQWLGNCTLE 96 S GNAGVIAPGYVTPWAAPGMP KILKYLFK +SP++FRP + QWRWI+ WL C LE Sbjct: 40 SFGNAGVIAPGYVTPWAAPGMPAKILKYLFKPASPLIFRPTLDPAQWRWIAHWLRECDLE 99 Query: 97 RYRRNKLRMQRIAYYSRDCLHEFLAQHPFDYGRSQGYLQLFRSRFDEDMAAPALALLEEA 156 R+R NK RMQRIAYYSR+CL EF +HPFDYGRSQGYLQLFRS +D ++A PALA+L EA Sbjct: 100 RFRVNKQRMQRIAYYSRECLREFRGRHPFDYGRSQGYLQLFRSEYDVELAQPALAVLREA 159 Query: 157 GIAHQRLSAAQCVATEPGLQHARIEPRSGLYLPDDEAGDCAVFARQLRRLCEEMGVQFRF 216 GIAH+ +SAAQC EPGL+ AR P SGLYLPDDEAGDCA F R+LR +CE GV+FRF Sbjct: 160 GIAHREVSAAQCAEIEPGLRWARQTPLSGLYLPDDEAGDCARFTRELRAICERNGVRFRF 219 Query: 217 GTQVSGLRVQGGQVQGLQVSSAGQAGQLACDALVVAAGVDSHALLAPLGIRVPLYPVKGY 276 T+VS L V+GG V+ +++ S AG+L DA+VVA GVDS +LLA LG++VPLYPVKGY Sbjct: 220 DTRVSSLDVEGGAVRAVRIESERGAGRLHADAVVVALGVDSDSLLARLGVKVPLYPVKGY 279 Query: 277 SATIPVRFPEAAPRAAVMDESLKTAITRMGDVVRVAGTAELGDDRLQLRAACLHTLRQVM 336 SAT+P+ E APRAA+MDESLKTAITR G+ +RVAGTAELG+ + LR L TL +V+ Sbjct: 280 SATLPITDEEKAPRAALMDESLKTAITRFGNNLRVAGTAELGNRQSTLREQALQTLMKVL 339 Query: 337 RDWFPLAGDLDDAQFWVGRRPMTPDGPPLLGPTPVRNLFLNLGHGSTGWAMSLGSGRVVA 396 DWFP A + A FWVGRRPMTPDG PLLGP+ V L+LNLGHGSTGWAMS+GSGRVVA Sbjct: 340 GDWFPHAANPTSAHFWVGRRPMTPDGAPLLGPSGVEKLWLNLGHGSTGWAMSMGSGRVVA 399 Query: 397 DLITGTPPAIDI 408 DLITG P ID+ Sbjct: 400 DLITGRKPEIDL 411 >ref|YP_001897203.1| D-amino-acid dehydrogenase [Burkholderia phytofirmans PsJN] gb|ACD17979.1| D-amino-acid dehydrogenase [Burkholderia phytofirmans PsJN] Length = 424 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 253/372 (68%), Positives = 294/372 (79%) Query: 37 SAGNAGVIAPGYVTPWAAPGMPGKILKYLFKASSPVVFRPRMSARQWRWISQWLGNCTLE 96 S GNAGVIAPGYVTPWAAPGMP KILKYLFK +SP++FRP + A QWRWI++WL C LE Sbjct: 40 SFGNAGVIAPGYVTPWAAPGMPAKILKYLFKPASPLIFRPTLDAAQWRWIARWLHECDLE 99 Query: 97 RYRRNKLRMQRIAYYSRDCLHEFLAQHPFDYGRSQGYLQLFRSRFDEDMAAPALALLEEA 156 R+R NK RMQRIAYYSRDCLHEF A++PFDYGRSQGYLQLFRS +D ++A PALA+L +A Sbjct: 100 RFRVNKQRMQRIAYYSRDCLHEFRARYPFDYGRSQGYLQLFRSEYDVELAQPALAVLRDA 159 Query: 157 GIAHQRLSAAQCVATEPGLQHARIEPRSGLYLPDDEAGDCAVFARQLRRLCEEMGVQFRF 216 GIAH+ +SAAQCV EPGL AR P SGLYLPDDEAGDCA F R+LR +CE V+FRF Sbjct: 160 GIAHREVSAAQCVEIEPGLSWARQAPLSGLYLPDDEAGDCARFTRELRAICERNDVRFRF 219 Query: 217 GTQVSGLRVQGGQVQGLQVSSAGQAGQLACDALVVAAGVDSHALLAPLGIRVPLYPVKGY 276 T+V+ L V GG V+ +++ S A L DA+VVA GVDS LLA LG++VPLYPVKGY Sbjct: 220 DTRVTSLDVHGGAVRAVRIESERGAEMLYADAVVVALGVDSAGLLARLGVKVPLYPVKGY 279 Query: 277 SATIPVRFPEAAPRAAVMDESLKTAITRMGDVVRVAGTAELGDDRLQLRAACLHTLRQVM 336 SAT+PV E APR A+MDESLKTAITR G+ +RVAGTAELG+ + LR L TL +V+ Sbjct: 280 SATLPVTDEEKAPRGALMDESLKTAITRFGNNLRVAGTAELGNRQTTLREQALQTLMKVL 339 Query: 337 RDWFPLAGDLDDAQFWVGRRPMTPDGPPLLGPTPVRNLFLNLGHGSTGWAMSLGSGRVVA 396 DWFP A + A FWVGRRPMTPDG PLLGP+ V L+LNLGHGSTGWAMS+GSGRVVA Sbjct: 340 NDWFPHAANPTSAHFWVGRRPMTPDGAPLLGPSGVEKLWLNLGHGSTGWAMSMGSGRVVA 399 Query: 397 DLITGTPPAIDI 408 DLIT P ID+ Sbjct: 400 DLITHRKPEIDL 411 >ref|ZP_03268815.1| D-amino-acid dehydrogenase [Burkholderia sp. H160] gb|EDZ99601.1| D-amino-acid dehydrogenase [Burkholderia sp. H160] Length = 421 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 250/372 (67%), Positives = 292/372 (78%) Query: 37 SAGNAGVIAPGYVTPWAAPGMPGKILKYLFKASSPVVFRPRMSARQWRWISQWLGNCTLE 96 S GNAGVIAPGYVTPWAAPGMP K+LKYLFK +SP++FRP + QWRWI++WL C LE Sbjct: 40 SFGNAGVIAPGYVTPWAAPGMPSKLLKYLFKPTSPLIFRPTLDPAQWRWIARWLRECNLE 99 Query: 97 RYRRNKLRMQRIAYYSRDCLHEFLAQHPFDYGRSQGYLQLFRSRFDEDMAAPALALLEEA 156 R+R NK RMQRIAYYSR CLHEF +HPFDYGRSQGYLQLFRS +D ++A PALA+L +A Sbjct: 100 RFRVNKQRMQRIAYYSRACLHEFRGRHPFDYGRSQGYLQLFRSEYDVELAQPALAVLRDA 159 Query: 157 GIAHQRLSAAQCVATEPGLQHARIEPRSGLYLPDDEAGDCAVFARQLRRLCEEMGVQFRF 216 GI H+ +SA QCV EPGL+ AR P +GLYLP+DEAGDCA F R+LR +CE GV FRF Sbjct: 160 GITHREVSATQCVEIEPGLRWARQAPFAGLYLPEDEAGDCARFTRELRAICERNGVSFRF 219 Query: 217 GTQVSGLRVQGGQVQGLQVSSAGQAGQLACDALVVAAGVDSHALLAPLGIRVPLYPVKGY 276 T+V L V+G V+G+++ S L DA+VVA GVDS ALLAPLG++VPLYPVKGY Sbjct: 220 DTRVMSLDVEGATVRGVRIQSERGGETLPADAVVVALGVDSAALLAPLGVKVPLYPVKGY 279 Query: 277 SATIPVRFPEAAPRAAVMDESLKTAITRMGDVVRVAGTAELGDDRLQLRAACLHTLRQVM 336 SAT+PV E APRAA+MDESLKTAITR G+ +R+AGTAELG+ + LR L TL V+ Sbjct: 280 SATLPVIDEEKAPRAALMDESLKTAITRFGNNLRIAGTAELGNRQTTLREQALQTLLTVL 339 Query: 337 RDWFPLAGDLDDAQFWVGRRPMTPDGPPLLGPTPVRNLFLNLGHGSTGWAMSLGSGRVVA 396 RDWFP A + A FWVGRRPMTPDG PLLGP V NL+LNLGHGSTGWAMS+GSGRVVA Sbjct: 340 RDWFPHAANATSAHFWVGRRPMTPDGAPLLGPCNVENLWLNLGHGSTGWAMSMGSGRVVA 399 Query: 397 DLITGTPPAIDI 408 DLIT P ID+ Sbjct: 400 DLITQRKPEIDL 411 >ref|ZP_06842394.1| D-amino-acid dehydrogenase [Burkholderia sp. Ch1-1] gb|EFG70072.1| D-amino-acid dehydrogenase [Burkholderia sp. Ch1-1] Length = 424 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 253/372 (68%), Positives = 293/372 (78%) Query: 37 SAGNAGVIAPGYVTPWAAPGMPGKILKYLFKASSPVVFRPRMSARQWRWISQWLGNCTLE 96 S GNAGVIAPGYVTPWAAPGMP KILKYLFK +SP++FRP QWRWI +WL C LE Sbjct: 40 SFGNAGVIAPGYVTPWAAPGMPAKILKYLFKPASPLIFRPTFDPAQWRWIVRWLRECDLE 99 Query: 97 RYRRNKLRMQRIAYYSRDCLHEFLAQHPFDYGRSQGYLQLFRSRFDEDMAAPALALLEEA 156 R+R NK RMQRIAYYSR+CLHEF +HPFDYGRSQGYLQLFRS +D ++A PALA+L +A Sbjct: 100 RFRVNKQRMQRIAYYSRECLHEFRGRHPFDYGRSQGYLQLFRSEYDVELAQPALAVLRDA 159 Query: 157 GIAHQRLSAAQCVATEPGLQHARIEPRSGLYLPDDEAGDCAVFARQLRRLCEEMGVQFRF 216 GIAH+ +S AQCV EPGL+ AR P SGLYLPDDEAGDCA F R+LR +CE V+FRF Sbjct: 160 GIAHREVSTAQCVEIEPGLRWARQAPLSGLYLPDDEAGDCARFTRELRAICERNDVRFRF 219 Query: 217 GTQVSGLRVQGGQVQGLQVSSAGQAGQLACDALVVAAGVDSHALLAPLGIRVPLYPVKGY 276 T+V+ L VQGG V+ +++ S AG L DA+VVA GVDS ALLA LG++VPLYPVKGY Sbjct: 220 DTRVTSLDVQGGAVRAVRIESERGAGMLHADAVVVALGVDSAALLARLGVKVPLYPVKGY 279 Query: 277 SATIPVRFPEAAPRAAVMDESLKTAITRMGDVVRVAGTAELGDDRLQLRAACLHTLRQVM 336 SAT+P+ E APRAA+MDESLKTAITR G+ +RVAGTAELG+ LR L TL +V+ Sbjct: 280 SATLPITDEEKAPRAALMDESLKTAITRFGNNLRVAGTAELGNRESTLREQALQTLMKVL 339 Query: 337 RDWFPLAGDLDDAQFWVGRRPMTPDGPPLLGPTPVRNLFLNLGHGSTGWAMSLGSGRVVA 396 DWFP A + A FWVGRRPMTPDG PLLGP+ V L+LNLGHGSTGWAMS+GSGRVVA Sbjct: 340 GDWFPHAANPTSAHFWVGRRPMTPDGAPLLGPSGVEKLWLNLGHGSTGWAMSMGSGRVVA 399 Query: 397 DLITGTPPAIDI 408 DLIT P ID+ Sbjct: 400 DLITDRKPEIDL 411 >ref|YP_004229702.1| D-amino-acid dehydrogenase [Burkholderia sp. CCGE1001] gb|ADX56642.1| D-amino-acid dehydrogenase [Burkholderia sp. CCGE1001] Length = 421 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 251/372 (67%), Positives = 295/372 (79%) Query: 37 SAGNAGVIAPGYVTPWAAPGMPGKILKYLFKASSPVVFRPRMSARQWRWISQWLGNCTLE 96 S GNAGVIAPGYVTPWAAPGMP KILKYLFK +SP++FRP + A QWRWI++WL C LE Sbjct: 40 SFGNAGVIAPGYVTPWAAPGMPAKILKYLFKPASPLIFRPTLDAAQWRWIARWLRECELE 99 Query: 97 RYRRNKLRMQRIAYYSRDCLHEFLAQHPFDYGRSQGYLQLFRSRFDEDMAAPALALLEEA 156 R+R NK RMQRIAYYSR+CL EF HPFDYGRSQGYLQLFRS +D ++A PALA+L +A Sbjct: 100 RFRVNKQRMQRIAYYSRECLREFRNYHPFDYGRSQGYLQLFRSEYDVELAQPALAVLRDA 159 Query: 157 GIAHQRLSAAQCVATEPGLQHARIEPRSGLYLPDDEAGDCAVFARQLRRLCEEMGVQFRF 216 GIA++ +SAAQCV EPGL+ AR P SG++LPDDEAGDCA F R+LR +CE GV+FRF Sbjct: 160 GIAYREVSAAQCVDIEPGLRWARAAPVSGVHLPDDEAGDCARFTRELRAICERHGVRFRF 219 Query: 217 GTQVSGLRVQGGQVQGLQVSSAGQAGQLACDALVVAAGVDSHALLAPLGIRVPLYPVKGY 276 T+V+ L V+GG V+ ++V S A L D++VVA GVDS ALLAPLG++VPLYPVKGY Sbjct: 220 DTRVTSLDVEGGAVRAVRVQSQHGAQTLPADSVVVALGVDSAALLAPLGVKVPLYPVKGY 279 Query: 277 SATIPVRFPEAAPRAAVMDESLKTAITRMGDVVRVAGTAELGDDRLQLRAACLHTLRQVM 336 SAT+PV E APRAA+MDESLKTAITR G+ +RVAGTAELG+ LR L TL +V+ Sbjct: 280 SATLPVIDDEKAPRAALMDESLKTAITRFGNNLRVAGTAELGNRHATLREQALQTLMKVL 339 Query: 337 RDWFPLAGDLDDAQFWVGRRPMTPDGPPLLGPTPVRNLFLNLGHGSTGWAMSLGSGRVVA 396 DWFP A A FWVGRRPMTPDG PLLGP+ + NL+LNLGHGSTGWAMS+GS RVVA Sbjct: 340 ADWFPHAAAPTSAHFWVGRRPMTPDGAPLLGPSGIGNLWLNLGHGSTGWAMSMGSARVVA 399 Query: 397 DLITGTPPAIDI 408 DLIT P ID+ Sbjct: 400 DLITQRKPEIDL 411