BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2491.p         (125 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774136.1| hypothetical protein Hsero_0709 [Herbaspiril...   130   5e-29

>ref|YP_003774136.1| hypothetical protein Hsero_0709 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62228.1| hypothetical protein Hsero_0709 [Herbaspirillum seropedicae SmR1]
          Length = 125

 Score =  130 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 117/126 (92%), Positives = 119/126 (94%), Gaps = 2/126 (1%)

Query: 1   MASKKIASVLIATTLLASAAVVSTPAMAHDRGGNGVAIAAGIIGAVAIGSLIANSQPAPV 60
           MASKKIASVLIATTLLASAA VSTPAMAHDRGGNGVAIAAGIIGAVAIGSLIAN+  APV
Sbjct: 1   MASKKIASVLIATTLLASAAAVSTPAMAHDRGGNGVAIAAGIIGAVAIGSLIANANSAPV 60

Query: 61  YQAPPQQVYYEAPQPVYYQPPQQVVYEQPRY-YAPPPPRPVRYVERTEVRTYRYDDRPDY 119
           YQAPPQQVYYEAPQPVYYQPPQQVVYEQPRY   PPPPRPVRYVERTEVRTYRYD+RPDY
Sbjct: 61  YQAPPQQVYYEAPQPVYYQPPQQVVYEQPRYYAPPPPPRPVRYVERTEVRTYRYDERPDY 120

Query: 120 YSYYGR 125
           Y YYGR
Sbjct: 121 Y-YYGR 125