BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2490.p (260 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774135.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA)... 456 e-126 ref|YP_004754270.1| Dimethyladenosine transferase [Collimonas fu... 393 e-107 ref|YP_001352110.1| dimethyladenosine transferase [Janthinobacte... 390 e-106 ref|YP_001098722.1| dimethyladenosine transferase [Herminiimonas... 382 e-104 ref|ZP_08273520.1| Dimethyladenosine transferase [Oxalobacterace... 348 4e-94 >ref|YP_003774135.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Herbaspirillum seropedicae SmR1] gb|ADJ62227.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 456 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 241/259 (93%), Positives = 253/259 (97%) Query: 1 MKHIPRKRFGQNFLTDDVVLHDIIRSIAPAADDAMVEIGPGLAAMTALLLEELRHLHVVE 60 MKHIPRKRFGQNFLTD++VLHDII SIAPAADDAMVEIGPGLAAMTALLLE LRHLHVVE Sbjct: 1 MKHIPRKRFGQNFLTDEMVLHDIITSIAPAADDAMVEIGPGLAAMTALLLEGLRHLHVVE 60 Query: 61 LDRDLVERLKKRFSAERLTVHSADALKFDFASIPVPEGRKLRVVGNLPYNISSPLLFHLA 120 LDRDLVERLKKRF A RLTVHSADALKFDF++IPVPEGRKLRVVGNLPYNISSPLLFHLA Sbjct: 61 LDRDLVERLKKRFDAARLTVHSADALKFDFSTIPVPEGRKLRVVGNLPYNISSPLLFHLA 120 Query: 121 EIAPQVQDQHFMLQKEVVERMVAEPGGKAFGRLSVMLQWRYHMELLFVVPPTAFDPPPQV 180 EIAPQVQDQHFMLQKEVVERMVAEPG KA+GRLSVMLQWRYHMELLFVVPPTAFDPPP+V Sbjct: 121 EIAPQVQDQHFMLQKEVVERMVAEPGSKAYGRLSVMLQWRYHMELLFVVPPTAFDPPPKV 180 Query: 181 DSAIVRMIPLAQPMACEQALLEQVVTKAFSQRRKVIRNCVAGLFTEDELRKAGVDPQARP 240 DSAIVRMIPLAQP+AC+QALLEQVVTKAFSQRRKVIRNCVAGLF+EDELR+ G+DPQARP Sbjct: 181 DSAIVRMIPLAQPLACQQALLEQVVTKAFSQRRKVIRNCVAGLFSEDELRQVGIDPQARP 240 Query: 241 EAVPVEQFVALANLLAARQ 259 EAVP+EQFVALANLLAARQ Sbjct: 241 EAVPMEQFVALANLLAARQ 259 >ref|YP_004754270.1| Dimethyladenosine transferase [Collimonas fungivorans Ter331] gb|AEK63447.1| Dimethyladenosine transferase [Collimonas fungivorans Ter331] Length = 270 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 203/253 (80%), Positives = 223/253 (88%) Query: 3 HIPRKRFGQNFLTDDVVLHDIIRSIAPAADDAMVEIGPGLAAMTALLLEELRHLHVVELD 62 HIPRKRFGQNFLTDD VL++II +I P ADD MVEIGPGLAAMT LLLE LR LHVVELD Sbjct: 17 HIPRKRFGQNFLTDDTVLYNIISAIDPQADDNMVEIGPGLAAMTRLLLESLRQLHVVELD 76 Query: 63 RDLVERLKKRFSAERLTVHSADALKFDFASIPVPEGRKLRVVGNLPYNISSPLLFHLAEI 122 RDLV RL+K F RL VHSADALKFDF SIP+ G+KLRVVGNLPYNISSPLLFHLAEI Sbjct: 77 RDLVARLQKNFDPARLHVHSADALKFDFNSIPLNGGKKLRVVGNLPYNISSPLLFHLAEI 136 Query: 123 APQVQDQHFMLQKEVVERMVAEPGGKAFGRLSVMLQWRYHMELLFVVPPTAFDPPPQVDS 182 APQVQDQHFMLQKEVVERMVA PG KAFGRLSVMLQWRY M+L+F+VPPTAFDPPP+V+S Sbjct: 137 APQVQDQHFMLQKEVVERMVAAPGSKAFGRLSVMLQWRYTMQLMFIVPPTAFDPPPRVES 196 Query: 183 AIVRMIPLAQPMACEQALLEQVVTKAFSQRRKVIRNCVAGLFTEDELRKAGVDPQARPEA 242 AIVRMIP+AQP+AC+Q LE VV KAF+QRRKVIRNC+AG+FTE+EL AGVDPQARPE Sbjct: 197 AIVRMIPIAQPLACDQKKLEDVVLKAFTQRRKVIRNCLAGMFTENELIDAGVDPQARPET 256 Query: 243 VPVEQFVALANLL 255 + +E FVALAN L Sbjct: 257 IAMELFVALANRL 269 >ref|YP_001352110.1| dimethyladenosine transferase [Janthinobacterium sp. Marseille] sp|A6SV13|RSMA_JANMA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gb|ABR88294.1| dimethyladenosine transferase [Janthinobacterium sp. Marseille] Length = 255 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 200/255 (78%), Positives = 226/255 (88%) Query: 1 MKHIPRKRFGQNFLTDDVVLHDIIRSIAPAADDAMVEIGPGLAAMTALLLEELRHLHVVE 60 MKHIPRKRFGQNFLTDD VL++IIR+I P D MVEIGPGLAAMT LLLE ++ +HVVE Sbjct: 1 MKHIPRKRFGQNFLTDDTVLYNIIRAIDPQPQDTMVEIGPGLAAMTRLLLEGVQQMHVVE 60 Query: 61 LDRDLVERLKKRFSAERLTVHSADALKFDFASIPVPEGRKLRVVGNLPYNISSPLLFHLA 120 LDRDLVERLKK F +RL +HSADAL+FDF++IPVP G KLRVVGNLPYNISSPLLFHLA Sbjct: 61 LDRDLVERLKKSFDPKRLIIHSADALQFDFSTIPVPAGSKLRVVGNLPYNISSPLLFHLA 120 Query: 121 EIAPQVQDQHFMLQKEVVERMVAEPGGKAFGRLSVMLQWRYHMELLFVVPPTAFDPPPQV 180 E+AP VQDQHFMLQKEVVERMVAEPG K +GRLSVMLQWRYHMEL+FVVPPTAFDPPP+V Sbjct: 121 EMAPHVQDQHFMLQKEVVERMVAEPGSKVYGRLSVMLQWRYHMELMFVVPPTAFDPPPRV 180 Query: 181 DSAIVRMIPLAQPMACEQALLEQVVTKAFSQRRKVIRNCVAGLFTEDELRKAGVDPQARP 240 +SAIVRMIPLAQP+ C+QA LEQVV KAFSQRRKVIRNC+AG+F E +L + G+DPQ RP Sbjct: 181 ESAIVRMIPLAQPLPCDQAKLEQVVLKAFSQRRKVIRNCLAGMFAESDLLEVGIDPQLRP 240 Query: 241 EAVPVEQFVALANLL 255 E +P+ Q+VALAN L Sbjct: 241 ETIPLAQYVALANRL 255 >ref|YP_001098722.1| dimethyladenosine transferase [Herminiimonas arsenicoxydans] sp|A4G256|RSMA_HERAR RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase emb|CAL60593.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) [Herminiimonas arsenicoxydans] Length = 255 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 192/255 (75%), Positives = 223/255 (87%) Query: 1 MKHIPRKRFGQNFLTDDVVLHDIIRSIAPAADDAMVEIGPGLAAMTALLLEELRHLHVVE 60 MKHIPRKRFGQNFLTDD VLH+II +I P D MVEIGPGLAAMT LLL+ + +HVVE Sbjct: 1 MKHIPRKRFGQNFLTDDGVLHNIILAIDPQPQDTMVEIGPGLAAMTRLLLDGVNQMHVVE 60 Query: 61 LDRDLVERLKKRFSAERLTVHSADALKFDFASIPVPEGRKLRVVGNLPYNISSPLLFHLA 120 LDRDLVERLKK F ++L +HSADAL+FDF++IPVP G KLRVVGNLPYNISSPLLFHLA Sbjct: 61 LDRDLVERLKKTFDPKKLIIHSADALQFDFSTIPVPAGSKLRVVGNLPYNISSPLLFHLA 120 Query: 121 EIAPQVQDQHFMLQKEVVERMVAEPGGKAFGRLSVMLQWRYHMELLFVVPPTAFDPPPQV 180 E+AP VQDQHFMLQKEVVERMVAEPG K +GRLSVMLQWRYHMEL+F+VPPTAFDPPP+V Sbjct: 121 EMAPHVQDQHFMLQKEVVERMVAEPGSKTYGRLSVMLQWRYHMELMFIVPPTAFDPPPRV 180 Query: 181 DSAIVRMIPLAQPMACEQALLEQVVTKAFSQRRKVIRNCVAGLFTEDELRKAGVDPQARP 240 +SAIVRMIP+ +P+ C+Q LEQVV KAFSQRRKVIRNC+AG+F+E +L +AG++PQ RP Sbjct: 181 ESAIVRMIPIEKPLPCDQTKLEQVVLKAFSQRRKVIRNCLAGMFSEADLIEAGINPQMRP 240 Query: 241 EAVPVEQFVALANLL 255 E + + Q+VALAN L Sbjct: 241 ETISLAQYVALANRL 255 >ref|ZP_08273520.1| Dimethyladenosine transferase [Oxalobacteraceae bacterium IMCC9480] gb|EGF33015.1| Dimethyladenosine transferase [Oxalobacteraceae bacterium IMCC9480] Length = 259 Score = 348 bits (894), Expect = 4e-94, Method: Composition-based stats. Identities = 184/255 (72%), Positives = 211/255 (82%) Query: 1 MKHIPRKRFGQNFLTDDVVLHDIIRSIAPAADDAMVEIGPGLAAMTALLLEELRHLHVVE 60 MKH+ RKRFGQNFLTD VL DII++IAPA DAMVEIGPGL AMT LLL++L LHVVE Sbjct: 1 MKHVARKRFGQNFLTDKQVLQDIIQTIAPARADAMVEIGPGLGAMTRLLLDDLDQLHVVE 60 Query: 61 LDRDLVERLKKRFSAERLTVHSADALKFDFASIPVPEGRKLRVVGNLPYNISSPLLFHLA 120 LDRDLV RL+K F ++L +HS DAL+FDF ++PVP G+KLRVVGNLPYNISSPLLFHLA Sbjct: 61 LDRDLVVRLQKTFDPKKLLIHSGDALQFDFGTLPVPAGQKLRVVGNLPYNISSPLLFHLA 120 Query: 121 EIAPQVQDQHFMLQKEVVERMVAEPGGKAFGRLSVMLQWRYHMELLFVVPPTAFDPPPQV 180 VQDQHFMLQKEVVERMVA PGGK++GRLSVMLQWRY M L F+VPPTAFDPPP+V Sbjct: 121 SFTALVQDQHFMLQKEVVERMVAAPGGKSYGRLSVMLQWRYAMSLRFIVPPTAFDPPPRV 180 Query: 181 DSAIVRMIPLAQPMACEQALLEQVVTKAFSQRRKVIRNCVAGLFTEDELRKAGVDPQARP 240 +SAIVRMIPL P+ C Q LE VV KAFS RRKV+RNC+AG+FTE++L AGVDP RP Sbjct: 181 ESAIVRMIPLESPLPCNQQALEAVVLKAFSMRRKVLRNCLAGMFTENQLIDAGVDPTLRP 240 Query: 241 EAVPVEQFVALANLL 255 E + +EQ+V LAN L Sbjct: 241 ETISLEQYVGLANRL 255