BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2488.p (499 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774133.1| parvulin-like peptidyl-prolyl cis-trans isom... 732 0.0 ref|YP_001098720.1| periplasmic peptidyl-prolyl cis-trans isomer... 514 e-143 ref|YP_001352108.1| peptidyl-prolyl cis-trans isomerase SurA [Ja... 505 e-141 ref|ZP_08273518.1| Survival protein SurA precursor (Peptidyl-pro... 501 e-139 ref|YP_004754272.1| Survival protein surA (peptidyl-prolyl cis-t... 487 e-135 >ref|YP_003774133.1| parvulin-like peptidyl-prolyl cis-trans isomerase [Herbaspirillum seropedicae SmR1] emb|CAM32660.1| Parvulin-like peptidyl-prolyl [Herbaspirillum seropedicae] gb|ADJ62225.1| parvulin-like peptidyl-prolyl cis-trans isomerase protein [Herbaspirillum seropedicae SmR1] Length = 496 Score = 732 bits (1889), Expect = 0.0, Method: Composition-based stats. Identities = 454/499 (90%), Positives = 470/499 (94%), Gaps = 3/499 (0%) Query: 1 MRNMRTPLLATTKTVTALLCMLGVISNAHAQFATTIIPVTPPETTGSAPSAPAKGSPKAA 60 MRNMRTPLLATTKTVTALLCMLGVISNA AQFATTIIPVTPPET SA APA G P AA Sbjct: 1 MRNMRTPLLATTKTVTALLCMLGVISNAQAQFATTIIPVTPPET--SAQPAPANGKPPAA 58 Query: 61 VKPAASKPAAPAAAPAAPAPAAASARNEPRPVDSILVVVNNEVITRQEVAERLASVEKRM 120 A +K AAPA A A A A + AR EPRPVDSI+VVVNNEVITRQEVA+RLASV KRM Sbjct: 59 SPAAPAKAAAPAPAKATAA-APSQARVEPRPVDSIMVVVNNEVITRQEVADRLASVVKRM 117 Query: 121 AAQNVQLPPRQQLVRQLVERMIVERAQAQMAKESGIVVDDAMLDRAMQRIAEQNKLSMPE 180 +AQNVQLPPR QLVRQLVERMIVERAQAQMAKE+GIVVDDAMLDRAMQRIA+QNKLSM + Sbjct: 118 SAQNVQLPPRDQLVRQLVERMIVERAQAQMAKENGIVVDDAMLDRAMQRIADQNKLSMAQ 177 Query: 181 FRSRLEAEGMNYASFREEIRREILSQRLREREVDNKVVVTESEIDNYLAAEANAGGQRQE 240 FR+RLEAEGMNYASFREEIRREILSQRLREREVDNKVVVTESE+DNYLAAEANAGGQRQE Sbjct: 178 FRTRLEAEGMNYASFREEIRREILSQRLREREVDNKVVVTESEVDNYLAAEANAGGQRQE 237 Query: 241 LDIAQILIRVPENASPEQLAARRERAEDVLRQLKTGADFAKTAAAYSDSSDALSGGDLGW 300 LDIAQILIRVPENA+P+QLA RRERAEDVLRQLKTGADFAKTAAAYSD+SDALSGGDLGW Sbjct: 238 LDIAQILIRVPENATPDQLAQRRERAEDVLRQLKTGADFAKTAAAYSDASDALSGGDLGW 297 Query: 301 RPADRLPQLFLDGVAKLQDGQVSGLLKSGNGFHILKLVGRRAAGGTQAAAPAVQQTHVRH 360 RPADRLPQLFLDGVAKLQDGQVSGLLKSGNGFHILKLVGRR A G QAAAPAVQQTHVRH Sbjct: 298 RPADRLPQLFLDGVAKLQDGQVSGLLKSGNGFHILKLVGRRTADGAQAAAPAVQQTHVRH 357 Query: 361 ILIKVNQVVTAAEAKRKLTELKERLDHGSATFEELAKLYSNDLSASKGGDLGWIYPGDTV 420 ILIKVNQVVTAAEAKRKLTELKERLDHGSATFEELAKLYSNDLSASKGGDLGW+YPGDTV Sbjct: 358 ILIKVNQVVTAAEAKRKLTELKERLDHGSATFEELAKLYSNDLSASKGGDLGWVYPGDTV 417 Query: 421 PEFERAMDQLKPGEVSQPIETPFGYHLIQVVERKTDDASKERTRQAARQAIRERKIEEAT 480 PEFERAMDQLKPGEVSQPIETPFGYHLIQVVERKTDDASKER RQAARQAIRERKI+EAT Sbjct: 418 PEFERAMDQLKPGEVSQPIETPFGYHLIQVVERKTDDASKERARQAARQAIRERKIDEAT 477 Query: 481 EDWMRQIRDRAYVEYRNDD 499 EDWMRQIRDRAYVEYRND+ Sbjct: 478 EDWMRQIRDRAYVEYRNDE 496 >ref|YP_001098720.1| periplasmic peptidyl-prolyl cis-trans isomerase (PPIase), involved in maturation of outer membrane proteins [Herminiimonas arsenicoxydans] emb|CAL60591.1| Chaperone SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (PPIase SurA) (Rotamase SurA) [Herminiimonas arsenicoxydans] Length = 469 Score = 514 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 282/426 (66%), Positives = 341/426 (80%), Gaps = 8/426 (1%) Query: 79 APAAASARNEPRPVDSILVVVNNEVITRQEVAERLASVEKRMAAQNVQLPPRQQLVRQLV 138 AP A+++R +PR D+ILVVVNNEVITR E ERL +E R+ Q Q+PP +QL RQL+ Sbjct: 40 APNASTSRLQPRLADAILVVVNNEVITRYEFIERLKVIENRLKGQGGQMPPMEQLQRQLL 99 Query: 139 ERMIVERAQAQMAKESGIVVDDAMLDRAMQRIAEQNKLSMPEFRSRLEAEGMNYASFREE 198 ERMIVERAQ Q AKESGI VDDAMLDRA+ RIA+QN+L+MPEFR RLE +GM Y FREE Sbjct: 100 ERMIVERAQLQQAKESGIKVDDAMLDRAVARIADQNQLTMPEFRKRLEQDGMVYFQFREE 159 Query: 199 IRREILSQRLREREVDNKVVVTESEIDNYLAAEANAGGQR-QELDIAQILIRVPENASPE 257 IR E++ QRLREREVDNK+ V+++E+D Y+A + QEL++ QILIRVPENA+P+ Sbjct: 160 IRSEMILQRLREREVDNKIQVSDAEVDAYMAEHSGTNANAPQELNLGQILIRVPENATPQ 219 Query: 258 QLAARRERAEDVLRQLKTGADFAKTAAAYSDSSDALSGGDLGWRPADRLPQLFLDGVAKL 317 QLA R+RAE+VL QL G DFAK AAAYSD +D L+GG+LGWR DRLPQLF+D A L Sbjct: 220 QLADSRKRAEEVLAQLNAGGDFAKLAAAYSDGTDGLTGGELGWRTQDRLPQLFVDATASL 279 Query: 318 QDGQVSGLLKSGNGFHILKLVGRRAAG-------GTQAAAPAVQQTHVRHILIKVNQVVT 370 Q GQ++ L+KSGNGFHILK++G+R AAA V+QTH HILIKVNQVV+ Sbjct: 280 QQGQIAPLVKSGNGFHILKVLGKRTQSVLRAAPGANPAAANTVKQTHASHILIKVNQVVS 339 Query: 371 AAEAKRKLTELKERLDHGSATFEELAKLYSNDLSASKGGDLGWIYPGDTVPEFERAMDQL 430 AA+A+RKLTELK+RLD+ +ATFEELA+L+SND SASKGGDLGWIYPGDTVPEFERAMD L Sbjct: 340 AADARRKLTELKQRLDNKAATFEELARLHSNDFSASKGGDLGWIYPGDTVPEFERAMDAL 399 Query: 431 KPGEVSQPIETPFGYHLIQVVERKTDDASKERTRQAARQAIRERKIEEATEDWMRQIRDR 490 GEVS+PIE+PFGYHLI V ERK+DD S+ER R RQA+R +K+EEAT+DW+RQ+RDR Sbjct: 400 PVGEVSEPIESPFGYHLILVKERKSDDVSQERQRLVVRQALRAQKVEEATQDWLRQVRDR 459 Query: 491 AYVEYR 496 AYVEYR Sbjct: 460 AYVEYR 465 >ref|YP_001352108.1| peptidyl-prolyl cis-trans isomerase SurA [Janthinobacterium sp. Marseille] gb|ABR90526.1| peptidyl-prolyl cis-trans isomerase SurA [Janthinobacterium sp. Marseille] Length = 469 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 285/433 (65%), Positives = 338/433 (78%), Gaps = 12/433 (2%) Query: 79 APAAASARNEPRPVDSILVVVNNEVITRQEVAERLASVEKRMAAQNVQLPPRQQLVRQLV 138 A +A +PR D+I+VVVNNEVITR + ER +E R+ +Q LPPR+QL RQL+ Sbjct: 36 AQGQTAAAVQPRLADAIIVVVNNEVITRYDFLERYKMIEARLQSQGGNLPPREQLQRQLL 95 Query: 139 ERMIVERAQAQMAKESGIVVDDAMLDRAMQRIAEQNKLSMPEFRSRLEAEGMNYASFREE 198 ERMIVERAQ Q AKE+GI +DD MLDRAM RIAEQNKLSMPEFR RLE +G+ Y+ FR E Sbjct: 96 ERMIVERAQLQQAKETGIKIDDTMLDRAMGRIAEQNKLSMPEFRKRLEEDGLVYSKFRNE 155 Query: 199 IRREILSQRLREREVDNKVVVTESEIDNYLAAEANAGGQR-QELDIAQILIRVPENASPE 257 IR E+ QRLREREVDNKV V++ EID Y+AA QEL IAQILIRVPENA+ + Sbjct: 156 IRDEMAIQRLREREVDNKVQVSDVEIDAYMAAHNAPAATAPQELHIAQILIRVPENATQK 215 Query: 258 QLAARRERAEDVLRQLKTGADFAKTAAAYSDSSDALSGGDLGWRPADRLPQLFLDGVAKL 317 QLA + RA++V+ QL GADFAK A+AYSD +D L+GG+LGWR A+RLPQLF+D A L Sbjct: 216 QLADSKRRADEVVAQLAAGADFAKLASAYSDGTDGLTGGELGWRSAERLPQLFVDATANL 275 Query: 318 QDGQVSGLLKSGNGFHILKLVGRRAAG-----------GTQAAAPAVQQTHVRHILIKVN 366 QDGQ++ ++KSGNGFHILKL+GRR AA AV+QTH HILIKVN Sbjct: 276 QDGQIAPIVKSGNGFHILKLLGRRTQSVLRADGGASGATAAAAPAAVKQTHASHILIKVN 335 Query: 367 QVVTAAEAKRKLTELKERLDHGSATFEELAKLYSNDLSASKGGDLGWIYPGDTVPEFERA 426 QVV+AAEA+RKL ELK+RLD+ +ATFEELAKLYSND SA+KGGDLGWIYPGDTVPEFERA Sbjct: 336 QVVSAAEARRKLLELKQRLDNKAATFEELAKLYSNDFSAAKGGDLGWIYPGDTVPEFERA 395 Query: 427 MDQLKPGEVSQPIETPFGYHLIQVVERKTDDASKERTRQAARQAIRERKIEEATEDWMRQ 486 MD L G+VS+PIE+PFGYHLI V ERK+DD S+ER R ARQAIRE+K+EEAT+DW+RQ Sbjct: 396 MDALPIGQVSEPIESPFGYHLILVTERKSDDVSQERQRMIARQAIREQKVEEATQDWLRQ 455 Query: 487 IRDRAYVEYRNDD 499 +RDRAYVEYR DD Sbjct: 456 VRDRAYVEYRMDD 468 >ref|ZP_08273518.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) [Oxalobacteraceae bacterium IMCC9480] gb|EGF33013.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) [Oxalobacteraceae bacterium IMCC9480] Length = 475 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 296/466 (63%), Positives = 368/466 (78%), Gaps = 8/466 (1%) Query: 42 PETTGSAPSAPAKGSPKAAV----KPAASKPAAPAAAPAAPAPAAASARNEPRPVDSILV 97 P+ T +P + AAV A +PA+ PA A AA ++EP+ +DSI+ Sbjct: 9 PDHTMRQAHSPVQCLKIAAVLISLAAACLQPASAQFTPAGQAAPAAPRKSEPQVIDSIVA 68 Query: 98 VVNNEVITRQEVAERLASVEKRMAAQNVQLPPRQQLVRQLVERMIVERAQAQMAKESGIV 157 VVN++VITR ++ R+A VE RM Q QLP R L +Q++ERMIV+RAQ Q+A +SGI Sbjct: 69 VVNSDVITRLDLNSRVALVETRMKQQGSQLPQRALLEKQILERMIVDRAQLQLAADSGIK 128 Query: 158 VDDAMLDRAMQRIAEQNKLSMPEFRSRLEAEGMNYASFREEIRREILSQRLREREVDNKV 217 +DD MLDRAM R+AEQNKLSM +FR++LE EG ++ FREEIR EI QR+REREVDNK+ Sbjct: 129 IDDVMLDRAMARLAEQNKLSMQDFRNQLEREGTPFSRFREEIREEIAMQRIREREVDNKL 188 Query: 218 VVTESEIDNYLAAEANAGGQRQELDIAQILIRVPENASPEQLAARRERAEDVLRQLKTGA 277 +TESE+DNYL AE NA + E ++AQILIR+PENA+ EQ+AARR RA+DV RQL++GA Sbjct: 189 QITESEVDNYLDAEKNAPQIQPEYNLAQILIRIPENATAEQIAARRARADDVARQLRSGA 248 Query: 278 DFAKTAAAYSDSSDALSGGDLGWRPADRLPQLFLDGVAKLQDGQVSGLLKSGNGFHILKL 337 DFAK AA+YSDS +AL GG+LGWR ADRLPQLF+D VA+L +G++S ++KS +GFHILK+ Sbjct: 249 DFAKLAASYSDSIEALKGGELGWRTADRLPQLFVDAVARLNEGELSAVIKSASGFHILKV 308 Query: 338 VGRRA----AGGTQAAAPAVQQTHVRHILIKVNQVVTAAEAKRKLTELKERLDHGSATFE 393 G+R + AAAPAVQQT RHILIKVN +VTAAEA RKLT+LK+RLD+ +ATFE Sbjct: 309 AGKRTRSADSSTASAAAPAVQQTRARHILIKVNTIVTAAEALRKLTDLKQRLDNKAATFE 368 Query: 394 ELAKLYSNDLSASKGGDLGWIYPGDTVPEFERAMDQLKPGEVSQPIETPFGYHLIQVVER 453 ELAKLYSNDLSASKGGDLGWIYPGDTVPEFERAM+ LKPGEVS PIETPFGYHLI+V+ER Sbjct: 369 ELAKLYSNDLSASKGGDLGWIYPGDTVPEFERAMNLLKPGEVSAPIETPFGYHLIEVIER 428 Query: 454 KTDDASKERTRQAARQAIRERKIEEATEDWMRQIRDRAYVEYRNDD 499 K+ D S+ER R +ARQA+RERK+EEAT+DW+RQ+RDRAYVEYR +D Sbjct: 429 KSQDVSQERKRLSARQALRERKLEEATQDWIRQLRDRAYVEYRLED 474 >ref|YP_004754272.1| Survival protein surA (peptidyl-prolyl cis-trans isomerase surA) [Collimonas fungivorans Ter331] gb|AEK63449.1| Survival protein surA precursor (Peptidyl-prolyl cis-trans isomerase surA) [Collimonas fungivorans Ter331] Length = 483 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 276/414 (66%), Positives = 340/414 (82%), Gaps = 3/414 (0%) Query: 89 PRPVDSILVVVNNEVITRQEVAERLASVEKRMAAQNVQLPPRQQLVRQLVERMIVERAQA 148 P+ VD+I+ VVN +VIT+QE+A+R++ V +RM AQN++LPP +L +QL+ERMI+ERA+ Sbjct: 69 PQTVDAIVAVVNTDVITQQELAKRMSDVTQRMRAQNIELPPVAELQKQLLERMILERAEV 128 Query: 149 QMAKESGIVVDDAMLDRAMQRIAEQNKLSMPEFRSRLEAEGMNYASFREEIRREILSQRL 208 Q+AKE+G+ VDD MLDRA+ RIAEQNKLSM +F+ +L + + YASFREEIR+E+L QRL Sbjct: 129 QLAKENGLSVDDVMLDRAISRIAEQNKLSMGDFQKQLAQDKIPYASFREEIRQEMLLQRL 188 Query: 209 REREVDNKVVVTESEIDNYLAAEANAGGQRQELDIAQILIRVPENASPEQLAARRERAED 268 REREVDNK+ ++ESE+DNY+AAE QELD+AQIL+RVPENAS EQ+A R +RAE+ Sbjct: 189 REREVDNKIQISESEVDNYIAAENANKQTAQELDLAQILVRVPENASAEQIAQRAKRAEE 248 Query: 269 VLRQLKTGADFAKTAAAYSDSSDALSGGDLGWRPADRLPQLFLDGVAKLQDGQVSGLLKS 328 ++Q+K+G +FA AAAYSD+SDAL+GGD+GWR DRLP LF++ VA L GQVS +LKS Sbjct: 249 AMQQIKSGGNFAAVAAAYSDASDALTGGDMGWRAQDRLPALFVEAVANLNPGQVSSILKS 308 Query: 329 GNGFHILKLVGRRAAGGTQAAAPA---VQQTHVRHILIKVNQVVTAAEAKRKLTELKERL 385 NGFHI+KLV +RAA A A VQQTHVRHILIKV VTA EA+R+L +LKER+ Sbjct: 309 ANGFHIIKLVNKRAAAAAAATDTAAAPVQQTHVRHILIKVTPTVTATEARRRLADLKERI 368 Query: 386 DHGSATFEELAKLYSNDLSASKGGDLGWIYPGDTVPEFERAMDQLKPGEVSQPIETPFGY 445 D+ ATFE+LAKLYSNDLSASKGGDLGW+YPGDTVPEFERAMD LKPG++S PIE+PFGY Sbjct: 369 DNKVATFEDLAKLYSNDLSASKGGDLGWVYPGDTVPEFERAMDALKPGQISDPIESPFGY 428 Query: 446 HLIQVVERKTDDASKERTRQAARQAIRERKIEEATEDWMRQIRDRAYVEYRNDD 499 HLIQVVERK +D SKER R AR AIRERK EEAT DW+RQ+RDR YVEYR DD Sbjct: 429 HLIQVVERKANDVSKERQRLTARLAIRERKTEEATNDWLRQLRDRTYVEYRGDD 482