BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2480.p (601 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774126.1| transmembrane NAD(P) transhydrogenase subuni... 820 0.0 emb|CBA31129.1| NAD(P) transhydrogenase subunit beta [Curvibacte... 762 0.0 ref|YP_002982505.1| NAD(P)(+) transhydrogenase [Ralstonia picket... 757 0.0 ref|YP_334763.1| NAD(P) transhydrogenase subunit beta [Burkholde... 743 0.0 ref|ZP_07676028.1| NAD(P) transhydrogenase, beta subunit [Ralsto... 740 0.0 >ref|YP_003774126.1| transmembrane NAD(P) transhydrogenase subunit beta [Herbaspirillum seropedicae SmR1] gb|ADJ62218.1| transmembrane NAD(P) transhydrogenase (beta subunit) protein [Herbaspirillum seropedicae SmR1] Length = 479 Score = 820 bits (2118), Expect = 0.0, Method: Composition-based stats. Identities = 476/479 (99%), Positives = 478/479 (99%) Query: 123 MSMNLVTLLYLIASICFIQALKGLSHPATARRGNSFGIAGMVIAVLTTLALIVKIKGEGT 182 MSMNLVTLLYLIASICFIQALKGLSHPATARRGNSFGIAGMVIAVLTTLALIVKIKGEG Sbjct: 1 MSMNLVTLLYLIASICFIQALKGLSHPATARRGNSFGIAGMVIAVLTTLALIVKIKGEGG 60 Query: 183 NPSGDIGYLLVAGGVIVGGGIGAYLARSVEMTKMPELVAAMHSLIGLAAVCIAVAAVAEP 242 NPSGDIGYLLVAGGVIVGGGIGAYLARSVEMTKMPELVAAMHSLIGLAAVCIAVAAVAEP Sbjct: 61 NPSGDIGYLLVAGGVIVGGGIGAYLARSVEMTKMPELVAAMHSLIGLAAVCIAVAAVAEP 120 Query: 243 WALGISAHGQLIPVGNRVELFIGTFVGAITFSGSVIAFGKLSGKYKFRLFQGAPVNFAGQ 302 WALGISAHGQLIPVGNRVELFIGTFVGAITFSGSVIAFGKLSGKYKFRLFQGAPVNFAGQ Sbjct: 121 WALGISAHGQLIPVGNRVELFIGTFVGAITFSGSVIAFGKLSGKYKFRLFQGAPVNFAGQ 180 Query: 303 HFLNLLLAVAMIGFGIIFVLTQNWLPFIIMAAIAFALGVLIIIPIGGADMPVVVSMLNSY 362 HFLNLLLAVAMIGFGIIFVLTQNWLPFIIMAAIAFALGVLIIIPIGGADMPVVVSMLNSY Sbjct: 181 HFLNLLLAVAMIGFGIIFVLTQNWLPFIIMAAIAFALGVLIIIPIGGADMPVVVSMLNSY 240 Query: 363 SGWAAAGIGFSLNNSMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGGEAAAAGG 422 SGWAAAGIGFSLNNSMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGG+AAAAGG Sbjct: 241 SGWAAAGIGFSLNNSMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGGDAAAAGG 300 Query: 423 GAQQQRNVKSGSADDAAFLMGNAETVIIVPGYGLAVARAQHALKELTEKLTHNGVTVKYA 482 GAQQQRNVKSGSADDAAFLMGNAETVIIVPGYGLAVARAQHALKELTEKLTHNGVTVKYA Sbjct: 301 GAQQQRNVKSGSADDAAFLMGNAETVIIVPGYGLAVARAQHALKELTEKLTHNGVTVKYA 360 Query: 483 IHPVAGRMPGHMNVLLAEAEVPYDQVFEMEDINSEFAQADVVLVLGANDVVNPAAKDPKS 542 IHPVAGRMPGHMNVLLAEAEVPYDQVFEMEDINSEFAQADVVLVLGANDVVNPAAKDPKS Sbjct: 361 IHPVAGRMPGHMNVLLAEAEVPYDQVFEMEDINSEFAQADVVLVLGANDVVNPAAKDPKS 420 Query: 543 PIAGMPILEAYKAKTVIVNKRSMAAGYAGLDNELFYMDKTMMVFGDAKKVIEDMVKAVE 601 PIAGMPILEAYKAKTVIVNKRSMAAGYAGLDNELFYMDKTMMVFGDAKKVIEDMVKAV+ Sbjct: 421 PIAGMPILEAYKAKTVIVNKRSMAAGYAGLDNELFYMDKTMMVFGDAKKVIEDMVKAVD 479 >emb|CBA31129.1| NAD(P) transhydrogenase subunit beta [Curvibacter putative symbiont of Hydra magnipapillata] Length = 589 Score = 762 bits (1967), Expect = 0.0, Method: Composition-based stats. Identities = 428/590 (72%), Positives = 476/590 (80%), Gaps = 5/590 (0%) Query: 15 KEEHHGSQ-PHHHQPDHLRAGHLRWLPRGLDGDPGLAHAPDGGDQCHLGHHHHRRHAGRG 73 KE HHG+ PHH +PDHL AGHLR LPRGLD DP AHA +G DQ H H H RRH GR Sbjct: 2 KERHHGNGFPHHTEPDHLCAGHLRGLPRGLDRDPRTAHAANGRDQRHFCHCHRRRHVGRC 61 Query: 74 PHRRH-GRAHRRHAGRGAGGGERVRRLHGDAAHAGNVQEERAQGQVGRTS-MSMNLVTLL 131 H G+ H R AGRG G G+ VRR HGD HAGNVQE+ + R+ MS+NLVTLL Sbjct: 62 ADGNHVGQIHGR-AGRGLGSGQCVRRFHGDPPHAGNVQEKGQESPHRRSQIMSLNLVTLL 120 Query: 132 YLIASICFIQALKGLSHPATARRGNSFGIAGMVIAVLTTLALIVKIKGEGTNPSGDIGYL 191 YL AS+CFIQALKGLSHP T+ RGN FG+ GM +AV TT ALI K+ G+ G G Sbjct: 121 YLFASVCFIQALKGLSHPTTSIRGNVFGMVGMAVAVFTTGALIFKLAGQ-LGQDGMTGMA 179 Query: 192 LVAGGVIVGGGIGAYLARSVEMTKMPELVAAMHSLIGLAAVCIAVAAVAEPWALGISAHG 251 V G ++VGG G +A+ VEMTKMPELVA MHS+IGLAAV IAVAAVAEPWA I+ G Sbjct: 180 WVLGALLVGGTAGTVMAKRVEMTKMPELVAFMHSMIGLAAVFIAVAAVAEPWAFSIAEKG 239 Query: 252 QLIPVGNRVELFIGTFVGAITFSGSVIAFGKLSGKYKFRLFQGAPVNFAGQHFLNLLLAV 311 IP GNR+EL +G F+GA+TFSGSVIAFGKLSGKYKFRLFQGAPV F GQH LNL+L + Sbjct: 240 GAIPGGNRIELALGAFIGAVTFSGSVIAFGKLSGKYKFRLFQGAPVTFPGQHKLNLVLGL 299 Query: 312 AMIGFGIIFVLTQNWLPFIIMAAIAFALGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIG 371 A + F F +Q+ + F ++ A+ F +GVLIIIPIGGADMPVVVSMLNSYSGWAAAGIG Sbjct: 300 ASVFFVFGFWHSQSPMDFALILALGFVMGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIG 359 Query: 372 FSLNNSMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGGEAAAAGGGAQQQRNVK 431 FSLNNSMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGG+A++ GA QR VK Sbjct: 360 FSLNNSMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGGDASSGPAGAAVQRTVK 419 Query: 432 SGSADDAAFLMGNAETVIIVPGYGLAVARAQHALKELTEKLTHNGVTVKYAIHPVAGRMP 491 SGSADDAAF++GNAETV+IVPGYGLAVARAQHA+KEL KLT G+TVKYAIHPVAGRMP Sbjct: 420 SGSADDAAFVLGNAETVVIVPGYGLAVARAQHAVKELAAKLTEKGITVKYAIHPVAGRMP 479 Query: 492 GHMNVLLAEAEVPYDQVFEMEDINSEFAQADVVLVLGANDVVNPAAKDPKSPIAGMPILE 551 GHMNVLLAEAEVPYDQVFEMEDIN EF QADV ++LGANDVVNPAA SPI GMPILE Sbjct: 480 GHMNVLLAEAEVPYDQVFEMEDINGEFGQADVAIILGANDVVNPAAHTKGSPIYGMPILE 539 Query: 552 AYKAKTVIVNKRSMAAGYAGLDNELFYMDKTMMVFGDAKKVIEDMVKAVE 601 AYKAKT+IVNKRSMAAGYAGLDNELFYMDKTMMVFGDAKKV+EDM KA+E Sbjct: 540 AYKAKTIIVNKRSMAAGYAGLDNELFYMDKTMMVFGDAKKVVEDMSKAIE 589 >ref|YP_002982505.1| NAD(P)(+) transhydrogenase [Ralstonia pickettii 12D] gb|ACS63833.1| NAD(P)(+) transhydrogenase (AB-specific) [Ralstonia pickettii 12D] Length = 486 Score = 757 bits (1954), Expect = 0.0, Method: Composition-based stats. Identities = 413/486 (84%), Positives = 440/486 (90%), Gaps = 7/486 (1%) Query: 123 MSMNLVTLLYLIASICFIQALKGLSHPATARRGNSFGIAGMVIAVLTTLALIVKIKGE-- 180 MSMNLVTLLYL+AS+CFIQALKGLSHP TARRGN+FG+ GM IA +TT+ALI K+K E Sbjct: 1 MSMNLVTLLYLLASVCFIQALKGLSHPTTARRGNAFGMTGMAIAAVTTIALIYKLKAEMF 60 Query: 181 -GTNPSGDIGYLLVAGGVIVGGGIGAYLARSVEMTKMPELVAAMHSLIGLAAVCIAVAAV 239 GT G++L+ G++VGGGIGAY+AR+VEMTKMPELVAAMHSLIGLAAVCIA AAV Sbjct: 61 AGTESGASTGFILIFAGLVVGGGIGAYVARTVEMTKMPELVAAMHSLIGLAAVCIATAAV 120 Query: 240 AEPWALGISAHG-QLIPVGNRVELFIGTFVGAITFSGSVIAFGKLSGKYKFRLFQGAPVN 298 AEP A GI+ G ++P+GNRVELFIGTFVGAITFSGSVIAFGKLSGKYKFRLFQGAPV Sbjct: 121 AEPSAFGITVAGDNVLPLGNRVELFIGTFVGAITFSGSVIAFGKLSGKYKFRLFQGAPVQ 180 Query: 299 FAGQHFLNLLLAVAMIGFGIIFVLTQNWLPFIIMAAIAFALGVLIIIPIGGADMPVVVSM 358 FAGQH LNLLLAVAM+GFGI+F L+Q+WLPFIIM AIAF LGVLIIIPIGGADMPVVVSM Sbjct: 181 FAGQHMLNLLLAVAMLGFGILFFLSQSWLPFIIMTAIAFVLGVLIIIPIGGADMPVVVSM 240 Query: 359 LNSYSGWAAAGIGFSLNNSMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGF--GGE 416 LNSYSGWAAAGIGFSLNN MLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGF Sbjct: 241 LNSYSGWAAAGIGFSLNNPMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGSEAS 300 Query: 417 AAAAGGGAQQQRNVKSGSADDAAFLMGNAETVIIVPGYGLAVARAQHALKELTEKLTHNG 476 A AA GG+ QQR VKSGS DDAAFLMGNAETVIIVPGYGLAVARAQHALKELTEKL+ G Sbjct: 301 AGAAAGGSGQQRPVKSGSPDDAAFLMGNAETVIIVPGYGLAVARAQHALKELTEKLSDKG 360 Query: 477 VTVKYAIHPVAGRMPGHMNVLLAEAEVPYDQVFEMEDINSEFAQADVVLVLGANDVVNPA 536 VTVKYAIHPVAGRMPGHMNVLLAEAEVPYDQVFEMEDIN EF QADVVLVLGANDVVNPA Sbjct: 361 VTVKYAIHPVAGRMPGHMNVLLAEAEVPYDQVFEMEDINGEFGQADVVLVLGANDVVNPA 420 Query: 537 AK-DPKSPIAGMPILEAYKAKTVIVNKRSMAAGYAGLDNELFYMDKTMMVFGDAKKVIED 595 AK DPKSPIAGMPILEAYKAKT+IVNKRSM AGYAGLDNELFYMDKTMMVFGDAKKV+ED Sbjct: 421 AKNDPKSPIAGMPILEAYKAKTIIVNKRSMNAGYAGLDNELFYMDKTMMVFGDAKKVVED 480 Query: 596 MVKAVE 601 MVK+VE Sbjct: 481 MVKSVE 486 >ref|YP_334763.1| NAD(P) transhydrogenase subunit beta [Burkholderia pseudomallei 1710b] gb|ABA48013.1| NAD(P) transhydrogenase subunit beta [Burkholderia pseudomallei 1710b] Length = 607 Score = 743 bits (1919), Expect = 0.0, Method: Composition-based stats. Identities = 439/610 (71%), Positives = 493/610 (80%), Gaps = 16/610 (2%) Query: 2 RPACSSFTGGPHNKEEHHGSQPHHHQPDHLRAGHLRWLPRGLDGDPGLAHAPDGGDQCHL 61 R + + TGG H + HG HQ DH RAG +R LPR ++ AHA DGGDQ L Sbjct: 4 RRSRAQITGGGHGDHQSHG-----HQRDHFRAGGVRGLPRRVERHARAAHAADGGDQRDL 58 Query: 62 GHHHHRRHAGRGPHRRHGRAHRRHAGRGAGGGERVRRLHGDAAHAGNVQEERAQGQ---- 117 G RR A G H R R RH R A GG+RVRRL AAHA +VQEE AQ + Sbjct: 59 GDRDRRRDARVGAHARRRRQGVRHDRRRARGGQRVRRLPRHAAHARDVQEEGAQAEGRPR 118 Query: 118 VGRTSMSMNLVTLLYLIASICFIQALKGLSHPATARRGNSFGIAGMVIAVLTTLALIVKI 177 G +MSMN+VTLLYL+AS+CFIQALKGLS+P +ARRGN FG+ GM IA+LTT+ALI K Sbjct: 119 EGGRAMSMNVVTLLYLVASVCFIQALKGLSNPKSARRGNLFGMVGMAIAILTTVALIAK- 177 Query: 178 KGEGTNPSGDIGYLLVAGGVIVGGGIGAYLARSVEMTKMPELVAAMHSLIGLAAVCIAVA 237 + + +G LV G +++GG +GA +A VEMTKMPELVAAMHSLIGLAAVCIA+A Sbjct: 178 QAAWLGANLPLGLALVFGALVIGGAVGAVIAARVEMTKMPELVAAMHSLIGLAAVCIAIA 237 Query: 238 AVAEPWALGI----SAHGQLIPVGNRVELFIGTFVGAITFSGSVIAFGKLSGKYKFRLFQ 293 VAEP A G+ ++ IP GNR+ELFIGTFVGAITFSGSVIAFGKLSGKY+FRLFQ Sbjct: 238 VVAEPEAFGLVPQDASAPNFIPYGNRIELFIGTFVGAITFSGSVIAFGKLSGKYRFRLFQ 297 Query: 294 GAPVNFAGQHFLNLLLAVAMIGFGIIFVLTQNWLPFIIMAAIAFALGVLIIIPIGGADMP 353 GAPV + GQH +NL+LA+AM+GFGI+F +TQ+WLPF IM AIAFALGVLIIIPIGGADMP Sbjct: 298 GAPVVYPGQHLINLMLALAMLGFGILFFITQSWLPFGIMTAIAFALGVLIIIPIGGADMP 357 Query: 354 VVVSMLNSYSGWAAAGIGFSLNNSMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVIL-GG 412 VVVSMLNSYSGWAAAGIGFSLNN+MLIIAGSLVGSSGAILSYIMC AMNRSFFNVIL G Sbjct: 358 VVVSMLNSYSGWAAAGIGFSLNNAMLIIAGSLVGSSGAILSYIMCHAMNRSFFNVILGGF 417 Query: 413 FGGEAAAAGGGAQQQRNVKSGSADDAAFLMGNAETVIIVPGYGLAVARAQHALKELTEKL 472 G AAA GGA++QR VKSGSA+DA+F++GNAETV+IVPGYGLAVARAQHALKELT+KL Sbjct: 418 GGDAAAATAGGAKEQRPVKSGSAEDASFMLGNAETVVIVPGYGLAVARAQHALKELTDKL 477 Query: 473 THNGVTVKYAIHPVAGRMPGHMNVLLAEAEVPYDQVFEMEDINSEFAQADVVLVLGANDV 532 G+ VKYAIHPVAGRMPGHMNVLLAEAEVPY+ V EMEDIN EF Q DVVLVLGANDV Sbjct: 478 VEKGIDVKYAIHPVAGRMPGHMNVLLAEAEVPYEIVHEMEDINGEFGQVDVVLVLGANDV 537 Query: 533 VNPAAK-DPKSPIAGMPILEAYKAKTVIVNKRSMAAGYAGLDNELFYMDKTMMVFGDAKK 591 VNPAAK DPKSPIAGMPI+EAYKA+TVIVNKRSMAAGYAGLDNELFYMDKTMMVFGDAKK Sbjct: 538 VNPAAKNDPKSPIAGMPIIEAYKARTVIVNKRSMAAGYAGLDNELFYMDKTMMVFGDAKK 597 Query: 592 VIEDMVKAVE 601 VIEDMVK+VE Sbjct: 598 VIEDMVKSVE 607 >ref|ZP_07676028.1| NAD(P) transhydrogenase, beta subunit [Ralstonia sp. 5_7_47FAA] gb|EFP65366.1| NAD(P) transhydrogenase, beta subunit [Ralstonia sp. 5_7_47FAA] Length = 486 Score = 740 bits (1911), Expect = 0.0, Method: Composition-based stats. Identities = 414/486 (85%), Positives = 441/486 (90%), Gaps = 7/486 (1%) Query: 123 MSMNLVTLLYLIASICFIQALKGLSHPATARRGNSFGIAGMVIAVLTTLALIVKIKGE-- 180 MSMNLVTLLYL+AS+CFIQALKGLSHP TARRGN+FG+ GM IA +TT+ALI K+K E Sbjct: 1 MSMNLVTLLYLLASVCFIQALKGLSHPTTARRGNAFGMTGMAIAAVTTIALIYKLKAEMF 60 Query: 181 -GTNPSGDIGYLLVAGGVIVGGGIGAYLARSVEMTKMPELVAAMHSLIGLAAVCIAVAAV 239 GT G++L+ G++VGGGIGAY+AR+VEMTKMPELVAAMHSLIGLAAVCIAVAAV Sbjct: 61 AGTESGTSTGFILIFAGLVVGGGIGAYVARTVEMTKMPELVAAMHSLIGLAAVCIAVAAV 120 Query: 240 AEPWALGISAHG-QLIPVGNRVELFIGTFVGAITFSGSVIAFGKLSGKYKFRLFQGAPVN 298 AEP A GI+ G ++P+GNRVELFIGTFVGAITFSGSVIAFGKLSGKYKFRLFQGAPV Sbjct: 121 AEPSAFGITVAGDNVLPLGNRVELFIGTFVGAITFSGSVIAFGKLSGKYKFRLFQGAPVQ 180 Query: 299 FAGQHFLNLLLAVAMIGFGIIFVLTQNWLPFIIMAAIAFALGVLIIIPIGGADMPVVVSM 358 FAGQH LNLLLAVAM+GFGI+F L+Q+WLPFIIM AIAF LGVLIIIPIGGADMPVVVSM Sbjct: 181 FAGQHMLNLLLAVAMLGFGILFFLSQSWLPFIIMTAIAFVLGVLIIIPIGGADMPVVVSM 240 Query: 359 LNSYSGWAAAGIGFSLNNSMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGF--GGE 416 LNSYSGWAAAGIGFSLNN MLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGF Sbjct: 241 LNSYSGWAAAGIGFSLNNPMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGSEAS 300 Query: 417 AAAAGGGAQQQRNVKSGSADDAAFLMGNAETVIIVPGYGLAVARAQHALKELTEKLTHNG 476 A AA GG+ QQR VKSGS DDAAFLMGNAETVIIVPGYGLAVARAQHALKELTEKL+ G Sbjct: 301 AGAAAGGSGQQRPVKSGSPDDAAFLMGNAETVIIVPGYGLAVARAQHALKELTEKLSDKG 360 Query: 477 VTVKYAIHPVAGRMPGHMNVLLAEAEVPYDQVFEMEDINSEFAQADVVLVLGANDVVNPA 536 VTVKYAIHPVAGRMPGHMNVLLAEAEVPYDQVFEMEDIN EF QADVVLVLGANDVVNPA Sbjct: 361 VTVKYAIHPVAGRMPGHMNVLLAEAEVPYDQVFEMEDINGEFGQADVVLVLGANDVVNPA 420 Query: 537 AK-DPKSPIAGMPILEAYKAKTVIVNKRSMAAGYAGLDNELFYMDKTMMVFGDAKKVIED 595 AK DPKSPIAGMPILEAYKAKT+IVNKRSM AGYAGLDNELFYMDKTMMVFGDAKKV+ED Sbjct: 421 AKNDPKSPIAGMPILEAYKAKTIIVNKRSMNAGYAGLDNELFYMDKTMMVFGDAKKVVED 480 Query: 596 MVKAVE 601 MVK+VE Sbjct: 481 MVKSVE 486