BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2472.p (232 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774118.1| TonB protein [Herbaspirillum seropedicae SmR... 256 3e-66 ref|YP_004754515.1| ferric siderophore transport system, peripla... 164 1e-38 ref|YP_001098674.1| hypothetical protein HEAR0319 [Herminiimonas... 139 4e-31 ref|YP_001352055.1| TonB-like protein [Janthinobacterium sp. Mar... 116 3e-24 ref|XP_002536875.1| Protein tonB, putative [Ricinus communis] >g... 109 4e-22 >ref|YP_003774118.1| TonB protein [Herbaspirillum seropedicae SmR1] gb|ADJ62210.1| TonB protein [Herbaspirillum seropedicae SmR1] Length = 232 Score = 256 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 214/232 (92%), Positives = 223/232 (96%) Query: 1 MNAISPSLMSVSPPSALMRQVRKIGPLGLIILLHIAFFWALQSGLVHQVASAVPKEVIAT 60 MNA SP LMS+SPPSALMRQ RKIGPLGLIILLHIAFFWALQSGLV Q +AVPKEVIAT Sbjct: 1 MNATSPLLMSMSPPSALMRQARKIGPLGLIILLHIAFFWALQSGLVKQAVNAVPKEVIAT 60 Query: 61 FIVPEKAPEPAPPKAEPAPPKQVKIVKKVVAPPKPVPVTETPAPTAITAPPQPPQPAAPA 120 FIVPEKAPEPAPPKA+PAPPK+VKIVKK V PPKP+PVTETPAPTAITAPPQPPQPAAPA Sbjct: 61 FIVPEKAPEPAPPKAQPAPPKEVKIVKKAVTPPKPIPVTETPAPTAITAPPQPPQPAAPA 120 Query: 121 PQVAAEPTPAPAAPPGPVLPKQITSGIEYIEKPNPTYPSVSRRMGEEGVVEFRVTVNTSG 180 PQVAAEPTPAPAAPPGPVLPKQITSGIEYIE+PNPTYPSVSRRMGEEGVVEFRVTVNTSG Sbjct: 121 PQVAAEPTPAPAAPPGPVLPKQITSGIEYIERPNPTYPSVSRRMGEEGVVEFRVTVNTSG 180 Query: 181 RAEKVEITKSSGYSRLDDAARSAVMRAVFKPYIENGNSITVSTVGSLAFRLN 232 RAEKVEITKSSGYSRLDDAAR+A+MRAVFKPYIENG +ITVSTVGSLAFRLN Sbjct: 181 RAEKVEITKSSGYSRLDDAARNAIMRAVFKPYIENGKAITVSTVGSLAFRLN 232 >ref|YP_004754515.1| ferric siderophore transport system, periplasmic binding protein TonB [Collimonas fungivorans Ter331] gb|AEK63692.1| Ferric siderophore transport system, periplasmic binding protein TonB [Collimonas fungivorans Ter331] Length = 226 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 126/227 (55%), Positives = 164/227 (72%), Gaps = 4/227 (1%) Query: 7 SLMSVSPPSALMRQVRKIGPLGLIILLHIAFFWALQSGLVHQVASAVPKEVIATFIVPEK 66 S ++S P+ +++++IGPLG I+LLH+AFFWAL+SGL+HQ A AVPKE+ A+FI PEK Sbjct: 2 SSATISSPALAWKKIKRIGPLGTILLLHVAFFWALKSGLIHQAAQAVPKEIFASFITPEK 61 Query: 67 APEPAPPKAEPAPPKQVKIVKKVVAPPKPVPV-TETPAPTAITAPPQPPQPAAPAPQVAA 125 APEP PPK +PA PK V +VKK +APP+P PV TP+ TAI+ P PQP AA Sbjct: 62 APEPTPPKPQPATPKTVAVVKKNIAPPRPTPVINTTPSETAISVPTPAPQPPQHEEPAAA 121 Query: 126 EPTPAPAAPPGPVLPKQITSGIEYIEKPNPTYPSVSRRMGEEGVVEFRVTVNTSGRAEKV 185 P PAAPP P+ ITSG+EYI+ P+ YP+VS+RMGEEG RV +N GRAE+V Sbjct: 122 APPAPPAAPPQ---PRTITSGVEYIQPPDVKYPAVSKRMGEEGKSVIRVLINEKGRAERV 178 Query: 186 EITKSSGYSRLDDAARSAVMRAVFKPYIENGNSITVSTVGSLAFRLN 232 E+ KSSG SRLDDAA+ AVMRA+FKPY+E+G + V + + F+L+ Sbjct: 179 EVQKSSGSSRLDDAAKQAVMRALFKPYMEDGKPLPVFAIVPINFQLS 225 >ref|YP_001098674.1| hypothetical protein HEAR0319 [Herminiimonas arsenicoxydans] emb|CAL60545.1| putative Periplasmic protein TonB [Herminiimonas arsenicoxydans] Length = 228 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 108/233 (46%), Positives = 140/233 (60%), Gaps = 7/233 (3%) Query: 1 MNAISPSLMSVSPPSALMRQVRKIGPLGLIILLHIAFFWALQSGLVHQVASAVPKEVIAT 60 MNA S P L + ++K GPL +I++LHI F+AL+SGLVHQV ++P E+ A+ Sbjct: 1 MNATSIPSSVPRLPLFLSQALKKYGPLIVIVVLHIGLFYALRSGLVHQVTKSLPTEIFAS 60 Query: 61 FIVPEKAPEPAPPKAEPAPPKQVKIVKKVVAPPKPVPV-TETPAPTAITAPPQPPQPAAP 119 FI + APEP P +PA PK V +VKK V P P PV TE P+P AIT PPQ + Sbjct: 61 FITEQAAPEPKP---QPAEPKTVPVVKKQVTRPTPRPVVTEAPSPQAITETATPPQESK- 116 Query: 120 APQVAAEPTPAPAAPPGPVLPKQITSGIEYIEKPNPTYPSVSRRMGEEGVVEFRVTVNTS 179 + A P+ A P ++ SG+ YI P P YP + RMG EG V RV +N Sbjct: 117 --EPPAVAAPSAPAAPAAPATPKMISGVSYINAPRPVYPPLDARMGNEGTVTLRVLINEK 174 Query: 180 GRAEKVEITKSSGYSRLDDAARSAVMRAVFKPYIENGNSITVSTVGSLAFRLN 232 GRAE+VE+ KSSG R+DDAAR AVMRA+FKPY+E+G + + F LN Sbjct: 175 GRAERVEVQKSSGSLRMDDAARDAVMRALFKPYLEDGRPAPAFAIVPINFTLN 227 >ref|YP_001352055.1| TonB-like protein [Janthinobacterium sp. Marseille] gb|ABR91380.1| TonB-like protein [Janthinobacterium sp. Marseille] Length = 228 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 107/233 (45%), Positives = 141/233 (60%), Gaps = 7/233 (3%) Query: 1 MNAISPSLMSVSPPSALMRQVRKIGPLGLIILLHIAFFWALQSGLVHQVASAVPKEVIAT 60 MNAI+ + P + +Q+R+ GPL II +HIA F+AL+SGLVHQVA +P+E+ A Sbjct: 1 MNAITTQSSAPLLPPHISQQLRRFGPLIAIIAIHIALFYALRSGLVHQVAKVLPREIFAD 60 Query: 61 FIVPEKAPEPAPPKAEPAPPKQVKIVKKVVAPPKPVPV-TETPAPTAITAPPQPPQPAAP 119 FI + A P +PA PK V +VKK V P P PV TE P+P AIT + P+ P Sbjct: 61 FITEQPA---PAPAPKPAEPKTVPVVKKQVTRPTPKPVVTEAPSPQAIT---ENAAPSPP 114 Query: 120 APQVAAEPTPAPAAPPGPVLPKQITSGIEYIEKPNPTYPSVSRRMGEEGVVEFRVTVNTS 179 + + + P PA + P ++ SG+ YI P P YP + RMG EG V RV +N Sbjct: 115 SNEPPSPPAPAAPSAPSVPATPKLISGVSYINPPRPVYPPLDARMGNEGTVTLRVLINEK 174 Query: 180 GRAEKVEITKSSGYSRLDDAARSAVMRAVFKPYIENGNSITVSTVGSLAFRLN 232 GRAEKVE+ KSSG R+DDAAR AVMRA+FKPY+E+G + + F LN Sbjct: 175 GRAEKVEVQKSSGSLRMDDAARDAVMRALFKPYLEDGRPAPAFAIVPINFTLN 227 >ref|XP_002536875.1| Protein tonB, putative [Ricinus communis] gb|EEF25508.1| Protein tonB, putative [Ricinus communis] Length = 416 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 81/216 (37%), Positives = 114/216 (52%), Gaps = 8/216 (3%) Query: 19 RQVRKIGPLGLIILLHIAFFWALQSGLVHQVASAV-PKEVIATFIVPEKAPEPAPPKAEP 77 R+ RK+ PL I++ H F+ SG++ V A+ P+ V TF+ P P KA P Sbjct: 205 RRTRKLTPLAAIVVGHAVVFYLAYSGMLRSVTHAIMPQVVNVTFVA-----SPEPLKAAP 259 Query: 78 APPKQVKIV--KKVVAPPKPVPVTETPAPTAITAPPQPPQPAAPAPQVAAEPTPAPAAPP 135 PPK+V +V K+ PP P PT PPQP A A P Sbjct: 260 QPPKEVPLVLSKQTFVPPLPQLNIVQTEPTITLPPPQPRPADPAPAHAAPSTAQAAPPAP 319 Query: 136 GPVLPKQITSGIEYIEKPNPTYPSVSRRMGEEGVVEFRVTVNTSGRAEKVEITKSSGYSR 195 + SG+EY+ P P YPS++RRMGE G V RV + G AE+V + KSSG + Sbjct: 320 PLPSTPKTVSGVEYVRAPQPVYPSIARRMGETGTVMLRVLIGEKGNAEQVTVQKSSGSAN 379 Query: 196 LDDAARSAVMRAVFKPYIENGNSITVSTVGSLAFRL 231 LD+A R AV+RA++KPY+E+G ++ V + + F+L Sbjct: 380 LDEAGRQAVLRALYKPYVEDGKAVPVYVLVPINFQL 415