BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2470.p         (139 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774116.1| biopolymer transport ExbD/TolR protein [Herb...   239   8e-62
ref|YP_004754517.1| biopolymer transport protein ExbD/TolR [Coll...   225   1e-57
ref|YP_001098672.1| putative biopolymer transport protein ExbD [...   200   6e-50
ref|YP_001352053.1| biopolymer transport protein ExbD [Janthinob...   189   1e-46
ref|ZP_08274159.1| Biopolymer transport protein ExbD/TolR [Oxalo...   174   4e-42

>ref|YP_003774116.1| biopolymer transport ExbD/TolR protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ62208.1| biopolymer transport ExbD/TolR protein [Herbaspirillum seropedicae
           SmR1]
          Length = 138

 Score =  239 bits (611), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 131/138 (94%), Positives = 133/138 (96%)

Query: 2   MGMGSLSDSDDDFNPEINTTPLVDVMLVLLIIFIITIPVMNHAVKIDLPKASSQPDQVKP 61
           M MGSLSDSDDDFNPEINTTPLVDVMLVLLIIFIITIPVMNHAVKIDLPKASSQPDQVKP
Sbjct: 1   MAMGSLSDSDDDFNPEINTTPLVDVMLVLLIIFIITIPVMNHAVKIDLPKASSQPDQVKP 60

Query: 62  ESINLSIDAAGNVFWNEEKIDSSELSARIAVAAQKQPQPEMHLRAERTTQYEKVAQVMSA 121
           ESINLSIDA+GNVFWNEEKIDS ELS RIA AAQKQPQPE+HLRAERTTQYEKVAQVMSA
Sbjct: 61  ESINLSIDASGNVFWNEEKIDSGELSVRIAAAAQKQPQPELHLRAERTTQYEKVAQVMSA 120

Query: 122 AQSGGLTKIGFVTDPDKK 139
           AQSGGL KIGFVTDPDKK
Sbjct: 121 AQSGGLAKIGFVTDPDKK 138


>ref|YP_004754517.1| biopolymer transport protein ExbD/TolR [Collimonas fungivorans
           Ter331]
 gb|AEK63694.1| Biopolymer transport protein ExbD/TolR [Collimonas fungivorans
           Ter331]
          Length = 139

 Score =  225 bits (574), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 118/139 (84%), Positives = 130/139 (93%)

Query: 1   MMGMGSLSDSDDDFNPEINTTPLVDVMLVLLIIFIITIPVMNHAVKIDLPKASSQPDQVK 60
           MMGMGSLSDSDDDFNPEINTTPLVDVMLVLLIIFI+TIPVMNHAVKIDLP+A++QPDQ K
Sbjct: 1   MMGMGSLSDSDDDFNPEINTTPLVDVMLVLLIIFIMTIPVMNHAVKIDLPRATNQPDQTK 60

Query: 61  PESINLSIDAAGNVFWNEEKIDSSELSARIAVAAQKQPQPEMHLRAERTTQYEKVAQVMS 120
           PE+INLSIDA G +FWN+E +D +EL+ARIAVAAQKQPQPE+HLRA RT QYEKVAQVM+
Sbjct: 61  PENINLSIDADGKLFWNDEVVDRNELNARIAVAAQKQPQPELHLRAARTVQYEKVAQVMA 120

Query: 121 AAQSGGLTKIGFVTDPDKK 139
           AAQSGGL KIGFVTDPD K
Sbjct: 121 AAQSGGLGKIGFVTDPDAK 139


>ref|YP_001098672.1| putative biopolymer transport protein ExbD [Herminiimonas
           arsenicoxydans]
 emb|CAL60543.1| Biopolymer transport protein exbD1 [Herminiimonas arsenicoxydans]
          Length = 137

 Score =  200 bits (508), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 107/138 (77%), Positives = 126/138 (91%), Gaps = 1/138 (0%)

Query: 2   MGMGSLSDSDDDFNPEINTTPLVDVMLVLLIIFIITIPVMNHAVKIDLPKASSQPDQVKP 61
           M MGSLSD DDDFNPEINTTPLVDVMLVLLIIFI+TIPVMNHAVK+DLP+A++QP++VKP
Sbjct: 1   MSMGSLSD-DDDFNPEINTTPLVDVMLVLLIIFIMTIPVMNHAVKLDLPRAANQPNEVKP 59

Query: 62  ESINLSIDAAGNVFWNEEKIDSSELSARIAVAAQKQPQPEMHLRAERTTQYEKVAQVMSA 121
           E+INLSIDAAG V+WN E +D S+L+AR+A AA+  PQPE+HLRAERTT YEKVAQVM+A
Sbjct: 60  ETINLSIDAAGKVYWNNEILDESQLAARVADAAKVTPQPELHLRAERTTPYEKVAQVMAA 119

Query: 122 AQSGGLTKIGFVTDPDKK 139
           AQSGGL+K+GFVT+  KK
Sbjct: 120 AQSGGLSKMGFVTEAPKK 137


>ref|YP_001352053.1| biopolymer transport protein ExbD [Janthinobacterium sp. Marseille]
 gb|ABR89029.1| biopolymer transport protein ExbD [Janthinobacterium sp. Marseille]
          Length = 136

 Score =  189 bits (480), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 102/137 (74%), Positives = 121/137 (88%), Gaps = 1/137 (0%)

Query: 2   MGMGSLSDSDDDFNPEINTTPLVDVMLVLLIIFIITIPVMNHAVKIDLPKASSQPDQVKP 61
           M MGSLSD +DDFNPEINTTPLVDVMLVLLIIFI+TIPVMNHAVK+DLP A++QP+ VKP
Sbjct: 1   MAMGSLSD-EDDFNPEINTTPLVDVMLVLLIIFIMTIPVMNHAVKLDLPHAANQPNDVKP 59

Query: 62  ESINLSIDAAGNVFWNEEKIDSSELSARIAVAAQKQPQPEMHLRAERTTQYEKVAQVMSA 121
           E+IN+SIDAAG V+WN E +D S++ +RIA AA+  PQPE+HLRA+R T YEKVAQVM+A
Sbjct: 60  ETINVSIDAAGQVYWNNEVLDQSQMLSRIADAAKVTPQPELHLRADRLTPYEKVAQVMAA 119

Query: 122 AQSGGLTKIGFVTDPDK 138
           AQSGGLTK+GFVT+  K
Sbjct: 120 AQSGGLTKMGFVTEAPK 136


>ref|ZP_08274159.1| Biopolymer transport protein ExbD/TolR [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF32372.1| Biopolymer transport protein ExbD/TolR [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 138

 Score =  174 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 111/138 (80%), Positives = 123/138 (89%)

Query: 2   MGMGSLSDSDDDFNPEINTTPLVDVMLVLLIIFIITIPVMNHAVKIDLPKASSQPDQVKP 61
           M MGSLSD DDDFNPEINTTPLVDVMLVLL+IFI+TIPVMNH+VKIDLP+ASSQPD  KP
Sbjct: 1   MAMGSLSDQDDDFNPEINTTPLVDVMLVLLVIFIMTIPVMNHSVKIDLPRASSQPDVAKP 60

Query: 62  ESINLSIDAAGNVFWNEEKIDSSELSARIAVAAQKQPQPEMHLRAERTTQYEKVAQVMSA 121
           ESINL+IDAAG V WN E ID  +L ARIA AAQ QPQPE+HLRAERTTQYEKVAQVM+A
Sbjct: 61  ESINLAIDAAGQVHWNTEVIDERQLQARIATAAQAQPQPELHLRAERTTQYEKVAQVMAA 120

Query: 122 AQSGGLTKIGFVTDPDKK 139
           AQ+GGL+KIGF+T+P  K
Sbjct: 121 AQAGGLSKIGFMTEPVSK 138