BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2461.p (177 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774107.1| peptide methionine sulfoxide reductase MsrA ... 342 1e-92 ref|YP_004754427.1| peptide methionine sulfoxide reductase [Coll... 282 1e-74 ref|YP_001100845.1| peptide methionine sulfoxide reductase (prot... 282 1e-74 ref|YP_001354529.1| peptide methionine sulfoxide reductase [Jant... 278 2e-73 ref|YP_295035.1| methionine sulfoxide reductase A [Ralstonia eut... 234 5e-60 >ref|YP_003774107.1| peptide methionine sulfoxide reductase MsrA protein [Herbaspirillum seropedicae SmR1] gb|ADJ62199.1| peptide methionine sulfoxide reductase MsrA protein [Herbaspirillum seropedicae SmR1] Length = 183 Score = 342 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 168/177 (94%), Positives = 174/177 (98%) Query: 1 MATEIAVLGGGCFWCLEAVYQQVKGVQSVESGYTGGSVVNPSYEQVCGGQTGHAEVVKLA 60 MA EIAVLGGGCFWCLEAVYQQV+GV+SVESGYTGGSVVNPSYEQVCGGQTGHAEVVKLA Sbjct: 7 MAKEIAVLGGGCFWCLEAVYQQVRGVESVESGYTGGSVVNPSYEQVCGGQTGHAEVVKLA 66 Query: 61 FDPQQISFREILEIFFTIHDPTTLNRQGNDVGTQYRSVIYYQDETQHETAKHIIAEMALV 120 FDPQQIS+RE+LEIFFTIHDPTTLNRQGNDVGTQYRSVIYYQDE QH+TA+HIIAEMALV Sbjct: 67 FDPQQISYRELLEIFFTIHDPTTLNRQGNDVGTQYRSVIYYQDEAQHDTARHIIAEMALV 126 Query: 121 WDAPIVTELSPPQTYYRAEDYHQNYFVQHPFQGYCAFVVAPKVAKLREVFAEKSKPE 177 WDAPIVTELSPPQ YYRAEDYHQNYFVQHPFQGYCAFVVAPKVAKLREVFAEKSKPE Sbjct: 127 WDAPIVTELSPPQPYYRAEDYHQNYFVQHPFQGYCAFVVAPKVAKLREVFAEKSKPE 183 >ref|YP_004754427.1| peptide methionine sulfoxide reductase [Collimonas fungivorans Ter331] gb|AEK63604.1| peptide methionine sulfoxide reductase [Collimonas fungivorans Ter331] Length = 186 Score = 282 bits (721), Expect = 1e-74, Method: Composition-based stats. Identities = 137/173 (79%), Positives = 149/173 (86%) Query: 1 MATEIAVLGGGCFWCLEAVYQQVKGVQSVESGYTGGSVVNPSYEQVCGGQTGHAEVVKLA 60 M E+AVLGGGCFWCLEAVYQ++KGVQ VESGYTGG V NPSYEQVC G TGHAEVV + Sbjct: 10 MTKEVAVLGGGCFWCLEAVYQEIKGVQQVESGYTGGQVANPSYEQVCEGTTGHAEVVAVT 69 Query: 61 FDPQQISFREILEIFFTIHDPTTLNRQGNDVGTQYRSVIYYQDETQHETAKHIIAEMALV 120 FD QISFRE+LEIFFTIHDPTTLNRQGNDVGTQYRS IYYQ Q AK ++AEMA V Sbjct: 70 FDTDQISFRELLEIFFTIHDPTTLNRQGNDVGTQYRSAIYYQSPQQETEAKKVMAEMANV 129 Query: 121 WDAPIVTELSPPQTYYRAEDYHQNYFVQHPFQGYCAFVVAPKVAKLREVFAEK 173 WDAPIVTELSP +TYY+AEDYHQNYF QHP QGYCAFVVAPKVAKLR++F +K Sbjct: 130 WDAPIVTELSPAETYYKAEDYHQNYFRQHPLQGYCAFVVAPKVAKLRKIFIDK 182 >ref|YP_001100845.1| peptide methionine sulfoxide reductase (protein-methionine-S-oxide reductase) (peptide Met(O) reductase) [Herminiimonas arsenicoxydans] emb|CAL62724.1| Peptide methionine sulfoxide reductase msrA (Protein-methionine-S-oxide reductase) (Peptide-methionine (S)-S-oxide reductase) (Peptide Met(O) reductase) [Herminiimonas arsenicoxydans] Length = 179 Score = 282 bits (721), Expect = 1e-74, Method: Composition-based stats. Identities = 130/177 (73%), Positives = 151/177 (85%) Query: 1 MATEIAVLGGGCFWCLEAVYQQVKGVQSVESGYTGGSVVNPSYEQVCGGQTGHAEVVKLA 60 M TEIA LGGGCFWC EAV+QQ+KG+ ++ESGYTGG V NPSYEQ+C G TGHAEVV+L Sbjct: 1 MTTEIATLGGGCFWCTEAVFQQMKGITAIESGYTGGQVANPSYEQICEGTTGHAEVVRLT 60 Query: 61 FDPQQISFREILEIFFTIHDPTTLNRQGNDVGTQYRSVIYYQDETQHETAKHIIAEMALV 120 FDP +SFREILE+FFTIHDPTTLNRQGNDVGTQYRSVIYY Q + A+H++AEMA V Sbjct: 61 FDPAVVSFREILEVFFTIHDPTTLNRQGNDVGTQYRSVIYYHTPEQQDMARHVMAEMANV 120 Query: 121 WDAPIVTELSPPQTYYRAEDYHQNYFVQHPFQGYCAFVVAPKVAKLREVFAEKSKPE 177 WDAPIVTELSP +TYY+AEDYHQNYF Q+P QGYCAF+VAPKVAK R+ F +K + + Sbjct: 121 WDAPIVTELSPAETYYKAEDYHQNYFRQNPLQGYCAFIVAPKVAKFRQTFRDKIRAD 177 >ref|YP_001354529.1| peptide methionine sulfoxide reductase [Janthinobacterium sp. Marseille] gb|ABR89701.1| peptide methionine sulfoxide reductase [Janthinobacterium sp. Marseille] Length = 179 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 129/173 (74%), Positives = 150/173 (86%) Query: 1 MATEIAVLGGGCFWCLEAVYQQVKGVQSVESGYTGGSVVNPSYEQVCGGQTGHAEVVKLA 60 MA EIA LGGGCFWC EAV+QQ+KG+++VESGYTGG V NP YEQ+C G TGHAEVV+L Sbjct: 1 MAMEIATLGGGCFWCTEAVFQQLKGIKAVESGYTGGHVENPVYEQICEGTTGHAEVVRLT 60 Query: 61 FDPQQISFREILEIFFTIHDPTTLNRQGNDVGTQYRSVIYYQDETQHETAKHIIAEMALV 120 +DP+ +SFREILEIFFTIHDPTTLNRQGNDVGTQYRSVIYY Q +TAKH+I+EMA V Sbjct: 61 YDPEIVSFREILEIFFTIHDPTTLNRQGNDVGTQYRSVIYYHSPEQQDTAKHVISEMANV 120 Query: 121 WDAPIVTELSPPQTYYRAEDYHQNYFVQHPFQGYCAFVVAPKVAKLREVFAEK 173 WDAPIVTELSP +TYY+AE YHQNYF +P QGYCAF+VAPKV+K R+ F++K Sbjct: 121 WDAPIVTELSPAETYYKAESYHQNYFRMNPMQGYCAFIVAPKVSKFRKTFSDK 173 >ref|YP_295035.1| methionine sulfoxide reductase A [Ralstonia eutropha JMP134] gb|AAZ60191.1| Methionine sulfoxide reductase A [Ralstonia eutropha JMP134] Length = 180 Score = 234 bits (596), Expect = 5e-60, Method: Composition-based stats. Identities = 112/172 (65%), Positives = 137/172 (79%), Gaps = 2/172 (1%) Query: 4 EIAVLGGGCFWCLEAVYQQVKGVQSVESGYTGGSVVNPSYEQVCGGQTGHAEVVKLAFDP 63 + A LGGGCFWCLEAVYQQV GV++VESGYTGG V +PSY+QV G TGHAEV+++ FDP Sbjct: 6 DTATLGGGCFWCLEAVYQQVNGVRAVESGYTGGHVSHPSYQQVSEGDTGHAEVIRVTFDP 65 Query: 64 QQISFREILEIFFTIHDPTTLNRQGNDVGTQYRSVIYYQDETQHETAKHIIAEMAL--VW 121 I++REI+EIFF IHDPTTLNRQGNDVG QYRS+I+ E Q A++++ E+ V+ Sbjct: 66 AVINYREIIEIFFAIHDPTTLNRQGNDVGPQYRSIIFTHSEAQRAVAEYVMRELVANKVF 125 Query: 122 DAPIVTELSPPQTYYRAEDYHQNYFVQHPFQGYCAFVVAPKVAKLREVFAEK 173 DAPIVT++ P Q Y+RAE HQNYF +HP QGYCAFV++PKVAK RE FA K Sbjct: 126 DAPIVTQIEPEQPYWRAEASHQNYFQEHPSQGYCAFVISPKVAKFRERFASK 177