BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2459.p (249 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774104.1| outer membrane W protein [Herbaspirillum ser... 287 1e-75 ref|YP_001351718.1| outer membrane protein W [Janthinobacterium ... 266 2e-69 ref|YP_001098385.1| outer membrane protein W [Herminiimonas arse... 252 4e-65 ref|YP_004754428.1| putative outer membrane protein W family [Co... 224 8e-57 ref|YP_004153385.1| ompw family protein [Variovorax paradoxus EP... 202 4e-50 >ref|YP_003774104.1| outer membrane W protein [Herbaspirillum seropedicae SmR1] gb|ADJ62196.1| outer membrane W protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 287 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 166/251 (66%), Positives = 189/251 (75%), Gaps = 8/251 (3%) Query: 1 MQKQFSFLPKLAALSVMAACAAPAMAQTAGSNIVNLGWFHLAPQDSSEILRKNDGPGAGP 60 MQKQFSFLPK+AALSVMAA AAP MAQTAGSNIVN+GWFHL PQDSS L K +GP AG Sbjct: 1 MQKQFSFLPKIAALSVMAAFAAPVMAQTAGSNIVNVGWFHLQPQDSSSGLTKLNGPQAGF 60 Query: 61 IPGSGSTVNSADTLGIAFTHFLTDNVSLTADLGIPPTFKLDGTGTLAGVGQIGKAKQWSP 120 P S STV++ADTLGIAFTHF TDN ++TADLGIPP FKL GTG L +G++GKAKQWSP Sbjct: 61 FPNSTSTVSNADTLGIAFTHFFTDNFAVTADLGIPPEFKLKGTGDLQALGELGKAKQWSP 120 Query: 121 AIVAKYHFGDANSTFRPFVGAGVTYVWYDNVELTDTFQRTISSKYTNGAVTGAKSSANLS 180 AIVAK++FG A FRPFVGAGVTYVWY +V L+ FQ S +G ++ANLS Sbjct: 121 AIVAKWYFGGAQDAFRPFVGAGVTYVWYSDVSLSQAFQNRASLN------SGGTATANLS 174 Query: 181 SSWAPVLTVGANYNFDKNWSVGLSVSYIPLKTNADITTELPAAAG--GTTHSSTSLTINP 238 SSWAPVLT GA Y F+ WS SVSYIPLKT+ADIT A G T++T++P Sbjct: 175 SSWAPVLTGGATYAFNDRWSASFSVSYIPLKTDADITANPAGAFAGLGPQRYKTTITLDP 234 Query: 239 IVTFLSVGYKF 249 IVTFLSVGYKF Sbjct: 235 IVTFLSVGYKF 245 >ref|YP_001351718.1| outer membrane protein W [Janthinobacterium sp. Marseille] gb|ABR91506.1| outer membrane protein W [Janthinobacterium sp. Marseille] Length = 242 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 144/249 (57%), Positives = 188/249 (75%), Gaps = 7/249 (2%) Query: 1 MQKQFSFLPKLAALSVMAACAAPAMAQTAGSNIVNLGWFHLAPQDSSEILRKNDGPGAGP 60 M K FS L KLAA+SV+AA + PA AQ+AG NIVN+GWFHL P +SSE L ++ GP Sbjct: 1 MTKPFSVLSKLAAVSVLAAISLPAAAQSAGDNIVNIGWFHLRPNESSEPLYRHMPAPVGP 60 Query: 61 IPGSGSTVNSADTLGIAFTHFLTDNVSLTADLGIPPTFKLDGTGTLAGVGQIGKAKQWSP 120 + GS +T+++ADTLG+A THF TDN +LTADLG+PP FKL G GTL+ +GQ+G+AKQWSP Sbjct: 61 LAGSSATISNADTLGLALTHFFTDNFALTADLGLPPKFKLYGGGTLSQLGQLGEAKQWSP 120 Query: 121 AIVAKYHFGDANSTFRPFVGAGVTYVWYDNVELTDTFQRTISSKYTNGAVTGAKSSANLS 180 AI+AK++FGD NS RPFVG GVT VWY +VEL+ + QR ++ G + G ++A+LS Sbjct: 121 AIIAKWYFGDRNSKLRPFVGLGVTRVWYTSVELSSSLQRQVT-----GGLPGGTATADLS 175 Query: 181 SSWAPVLTVGANYNFDKNWSVGLSVSYIPLKTNADITTELPAAAGGTTHSSTSLTINPIV 240 SSWAPV VG YNF + WS+G SV+YIPLKT+ADIT + + ++T+LT++P+V Sbjct: 176 SSWAPVANVGLTYNFTEKWSLGFSVAYIPLKTDADITGRIGNTV--ISRNTTTLTLDPLV 233 Query: 241 TFLSVGYKF 249 TFLSVGYKF Sbjct: 234 TFLSVGYKF 242 >ref|YP_001098385.1| outer membrane protein W [Herminiimonas arsenicoxydans] emb|CAL60256.1| putative outer membrane protein W precursor [Herminiimonas arsenicoxydans] Length = 249 Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats. Identities = 142/248 (57%), Positives = 181/248 (72%), Gaps = 8/248 (3%) Query: 5 FSFLPKLAALSVMAACAA---PAMAQTAGSNIVNLGWFHLAPQDSSEILRKNDGPGAGPI 61 F LP+LAA++ ++A AA PA AQ+AG NIVN+GWFHL DSSE L + P GPI Sbjct: 7 FRVLPQLAAVTAVSALAAFSLPAAAQSAGDNIVNVGWFHLKTYDSSETLIRRS-PAPGPI 65 Query: 62 PGSGSTVNSADTLGIAFTHFLTDNVSLTADLGIPPTFKLDGTGTLAGVGQIGKAKQWSPA 121 GS +TV ADTLG+AFTHF+TDN +LTADLGIPP FKLDG G+LA +GQIG A+QWSPA Sbjct: 66 AGSSATVGDADTLGLAFTHFVTDNFALTADLGIPPKFKLDGAGSLASLGQIGTARQWSPA 125 Query: 122 IVAKYHFGDANSTFRPFVGAGVTYVWYDNVELTDTFQRTISSKYTNGAVTGAKSSANLSS 181 ++AK++FGD NS RPFVG GVT VWY +V+L+ + Q ++ G T ++ANLSS Sbjct: 126 VIAKWYFGDRNSQIRPFVGLGVTRVWYSDVKLSSSLQAAVTPPAFGGPGT---ATANLSS 182 Query: 182 SWAPVLTVGANYNFDKNWSVGLSVSYIPLKTNADITTELPAAAGGTTHSSTSLTINPIVT 241 SW+PV +G YN DK WS+G S+SYIPL T+A+I AA + +T+LT++P+VT Sbjct: 183 SWSPVANLGLTYNIDKKWSIGFSISYIPLDTDAEIIGR-NAAGNVISRHTTNLTLDPLVT 241 Query: 242 FLSVGYKF 249 FLSVGYKF Sbjct: 242 FLSVGYKF 249 >ref|YP_004754428.1| putative outer membrane protein W family [Collimonas fungivorans Ter331] gb|AEK63605.1| putative outer membrane protein W family [Collimonas fungivorans Ter331] Length = 238 Score = 224 bits (571), Expect = 8e-57, Method: Composition-based stats. Identities = 142/249 (57%), Positives = 182/249 (73%), Gaps = 11/249 (4%) Query: 1 MQKQFSFLPKLAALSVMAACAAPAMAQTAGSNIVNLGWFHLAPQDSSEILRKNDGPGAGP 60 M+K F+ LPKLAALSV+AACAAPAMAQ AG N+VNLGW H+ SSE L+ G Sbjct: 1 MKKPFNVLPKLAALSVLAACAAPAMAQQAGDNVVNLGWAHIGLNQSSEPLKL----GTIT 56 Query: 61 IPGSGSTVNSADTLGIAFTHFLTDNVSLTADLGIPPTFKLDGTGTLAGVGQIGKAKQWSP 120 +P SG+ V++ADT + THF TDN+++TADLGIPP FKL G G+L G+GQ+G A QWSP Sbjct: 57 VPNSGAHVSNADTAILQMTHFFTDNIAVTADLGIPPKFKLSGEGSLKGLGQLGTATQWSP 116 Query: 121 AIVAKYHFGDANSTFRPFVGAGVTYVWYDNVELTDTFQRTISSKYTNGAVTGAKSSANLS 180 AI+AKY+FGDANS FRP+VGAG YVWY N++LT + ++ G GA +SA+LS Sbjct: 117 AILAKYYFGDANSQFRPYVGAGAAYVWYSNIKLTSSLTGLLA-----GGDAGASTSADLS 171 Query: 181 SSWAPVLTVGANYNFDKNWSVGLSVSYIPLKTNADITTELPAAAGGTTHSSTSLTINPIV 240 SS+ PV VG YNFDKNWS S+SY+PL T AD++T + G TTH++T +T+NP+V Sbjct: 172 SSFVPVANVGIAYNFDKNWSANFSLSYVPLDTKADLSTH--HSDGTTTHATTKITLNPLV 229 Query: 241 TFLSVGYKF 249 + L+VGYKF Sbjct: 230 SVLTVGYKF 238 >ref|YP_004153385.1| ompw family protein [Variovorax paradoxus EPS] gb|ADU35274.1| OmpW family protein [Variovorax paradoxus EPS] Length = 241 Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 110/228 (48%), Positives = 149/228 (65%), Gaps = 11/228 (4%) Query: 26 AQTAGSNIVNLGWFHLAPQDSSEILRKNDGPGAGPIPGSGSTVNSADTLGIAFTHFLTDN 85 AQ AG + GWFHLAPQDSS+ L+ P +PGSG++V +DTLG++ +F+ + Sbjct: 21 AQNAGDWVAGAGWFHLAPQDSSKPLQVT-APVQSVLPGSGASVKDSDTLGLSLAYFIDSH 79 Query: 86 VSLTADLGIPPTFKLDGTGTLAGVGQIGKAKQWSPAIVAKYHFGDANSTFRPFVGAGVTY 145 ++ LGIPP FKL+G GTLA VG++G+A+QWSP ++ KY+F + N FRPFVG G TY Sbjct: 80 WAVEGVLGIPPKFKLEGQGTLARVGELGEARQWSPTVLVKYNFNEGNDAFRPFVGLGATY 139 Query: 146 VWYDNVELTDTFQRTISSKYTNGAVTGAKSSANLSSSWAPVLTVGANYNFDKNWSVGLSV 205 VWY +V+LT Q ++S++ + ++A L SS+APVL G +Y DK+W + SV Sbjct: 140 VWYSDVKLTSNLQGALASQFRQSPYS-VNTTAKLDSSFAPVLNAGVSYQLDKHWGIAFSV 198 Query: 206 SYIPLKTNADITTE----LPAAAGGTTHSSTSLTINPIVTFLSVGYKF 249 SYIPLKT A +TT LP A S SL +NPIVTFLS Y+F Sbjct: 199 SYIPLKTKAKLTTTSITGLPVAC-----SEASLKLNPIVTFLSATYRF 241