BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2458.p (351 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774103.1| translation factor SUA5 [Herbaspirillum sero... 524 e-147 ref|YP_001354532.1| hypothetical protein mma_2842 [Janthinobacte... 404 e-110 ref|YP_001100848.1| putative Sua5/YciO/YrdC/YwlC family protein ... 399 e-109 ref|YP_004754429.1| Sua5 YciO YrdC YwlC family protein [Collimon... 388 e-106 ref|ZP_04579195.1| translation factor SUA5 [Oxalobacter formigen... 384 e-104 >ref|YP_003774103.1| translation factor SUA5 [Herbaspirillum seropedicae SmR1] gb|ADJ62195.1| translation factor (SUA5) protein [Herbaspirillum seropedicae SmR1] Length = 347 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 308/351 (87%), Positives = 320/351 (91%), Gaps = 4/351 (1%) Query: 1 MNDKRASSTVTIDAAAIMHAARKLEQGGLVAFPTETVYGLGGDAENPAAIAAIYAAKGRP 60 MNDK ASS+ AAA+MHAAR LE+GGLVAFPTETVYGLGGDAENPAAIAAIYAAKGRP Sbjct: 1 MNDKSASSSAID-AAAVMHAARTLERGGLVAFPTETVYGLGGDAENPAAIAAIYAAKGRP 59 Query: 61 ANHPVIVHVSPEADIGYWAASVPVEARRLIASFWPGPLTLILKRAAHIPDAVAGGQDSVG 120 ANHPVIVHVSPEADIGYWAASVPVEARRLIASFWPGPLTLILKRAAHIPDAVAGGQDSVG Sbjct: 60 ANHPVIVHVSPEADIGYWAASVPVEARRLIASFWPGPLTLILKRAAHIPDAVAGGQDSVG 119 Query: 121 VRCPSHPVAQALLREFRGGKGGIAGPSANKFGHVSPTTAEHVREEFGSDADSLVDYVLDG 180 VRCP+HPVAQALLREFRGGKGGIAGPSANKFGHVSPTTAEHVREEFGSDA SLVDYVLDG Sbjct: 120 VRCPAHPVAQALLREFRGGKGGIAGPSANKFGHVSPTTAEHVREEFGSDAGSLVDYVLDG 179 Query: 181 GQSEVGIESTIVDLSRIETHGPVLLRPGQISADRIAAVLGVPLATPDATAPRASGTLDAH 240 GQSEVGIESTIVDLSRI+THGPVLLRPGQISA+RI AVLGVPLATPDA+APRASGTLDAH Sbjct: 180 GQSEVGIESTIVDLSRIDTHGPVLLRPGQISAERIEAVLGVPLATPDASAPRASGTLDAH 239 Query: 241 YAPHTPVVQVASAELPALLGKLAGIGQKVALIQREFRGDGVPGVTVIRPMPLTADAYAHD 300 YAPHTPVVQVA EL +L KLA +G+KVALI R R V+V R MP TADAYAHD Sbjct: 240 YAPHTPVVQVAPEELATVLEKLAALGKKVALIARLQRSG---LVSVTRAMPDTADAYAHD 296 Query: 301 LYAALRDMDHAGADLIVVESLPLSADWQGVNDRLRRAAFDSQGLLARLLQG 351 LYAALRDMDH GADLIVVE+LPLS WQGVNDRLRRAAFDSQGLLARL Q Sbjct: 297 LYAALRDMDHTGADLIVVEALPLSGQWQGVNDRLRRAAFDSQGLLARLFQA 347 >ref|YP_001354532.1| hypothetical protein mma_2842 [Janthinobacterium sp. Marseille] gb|ABR89845.1| Uncharacterized conserved protein, putative translation factor [Janthinobacterium sp. Marseille] Length = 340 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 229/340 (67%), Positives = 267/340 (78%), Gaps = 5/340 (1%) Query: 11 TIDAAAIMHAARKLEQGGLVAFPTETVYGLGGDAENPAAIAAIYAAKGRPANHPVIVHVS 70 ++D AI AAR+LEQG LVAFPTETVYGLG DAENPAA+A IYAAKGRP+NHPVIVH++ Sbjct: 5 SLDWPAIRDAARRLEQGELVAFPTETVYGLGADAENPAAVANIYAAKGRPSNHPVIVHLA 64 Query: 71 PEADIGYWAASVPVEARRLIASFWPGPLTLILKRAAHIPDAVAGGQDSVGVRCPSHPVAQ 130 PEAD+ YWA SV +A++LIA FWPGPLTLILKRA HIPDAV+GGQDS+G+RCPSHPVAQ Sbjct: 65 PEADLNYWAQSVSPDAQKLIAVFWPGPLTLILKRAVHIPDAVSGGQDSIGLRCPSHPVAQ 124 Query: 131 ALLREFRGGKGGIAGPSANKFGHVSPTTAEHVREEFGSDADSLVDYVLDGGQSEVGIEST 190 ALLR F+ GKGG+A PSANKFGHVSPTTA+HV EFG DA SL+ +LDGGQSEVGIEST Sbjct: 125 ALLRAFKDGKGGVAAPSANKFGHVSPTTAQHVHNEFGGDAGSLLTCILDGGQSEVGIEST 184 Query: 191 IVDLSRIETHGPVLLRPGQISADRIAAVLGVPLATPDATAPRASGTLDAHYAPHTPVVQV 250 IVD+SR VLLRPG ISA++IAAV+G A+PD APRASGTL++HYAP TPVV V Sbjct: 185 IVDMSRGHA---VLLRPGHISAEQIAAVIGYLPASPDQAAPRASGTLESHYAPLTPVVLV 241 Query: 251 ASAELPALLGKLAGIGQKVALIQREFRGDGVPGVTVIRPMPLTADAYAHDLYAALRDMDH 310 L A+L KL G++ AL+Q + D +P V +P T AYAHDLYAALR MD Sbjct: 242 DGEHLLAVLQKLNLRGRRAALMQ--YAVDAMPLVAASISLPDTPIAYAHDLYAALRAMDD 299 Query: 311 AGADLIVVESLPLSADWQGVNDRLRRAAFDSQGLLARLLQ 350 AD+IVV++ P W GVNDRLRRAA DS G+L RLL+ Sbjct: 300 VHADVIVVQTPPTDVAWSGVNDRLRRAAHDSAGILQRLLE 339 >ref|YP_001100848.1| putative Sua5/YciO/YrdC/YwlC family protein [Herminiimonas arsenicoxydans] emb|CAL62727.1| Conserved hypothetical protein, putative translation factor [Herminiimonas arsenicoxydans] Length = 339 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 228/340 (67%), Positives = 259/340 (76%), Gaps = 5/340 (1%) Query: 11 TIDAAAIMHAARKLEQGGLVAFPTETVYGLGGDAENPAAIAAIYAAKGRPANHPVIVHVS 70 ++D AI AAR+LE+G LVAFPTETVYGLG DAENP A+A IY AKGRP+NHPVIVH++ Sbjct: 4 SLDLTAIADAARRLERGELVAFPTETVYGLGADAENPLAVAKIYQAKGRPSNHPVIVHLA 63 Query: 71 PEADIGYWAASVPVEARRLIASFWPGPLTLILKRAAHIPDAVAGGQDSVGVRCPSHPVAQ 130 PEADI YWA V EAR+LIA+FWPGPLTLILKRA HIPD VAGGQDS+G+RCPSHPVAQ Sbjct: 64 PEADIAYWAKDVSPEARQLIAAFWPGPLTLILKRANHIPDTVAGGQDSIGLRCPSHPVAQ 123 Query: 131 ALLREFRGGKGGIAGPSANKFGHVSPTTAEHVREEFGSDADSLVDYVLDGGQSEVGIEST 190 ALLR F+ GKGGIA PSANKFGHVSPTTA+HVR+EF D + L+ VLDGGQSEVGIEST Sbjct: 124 ALLRNFKQGKGGIAAPSANKFGHVSPTTAQHVRDEFVDDTNGLLTCVLDGGQSEVGIEST 183 Query: 191 IVDLSRIETHGPVLLRPGQISADRIAAVLGVPLATPDATAPRASGTLDAHYAPHTPVVQV 250 IVD+SR VLLRPG ISA +I AVLGV PDA APRASGTL+AHYAPHTPVV + Sbjct: 184 IVDMSRGRA---VLLRPGHISAAQIGAVLGVAPLLPDAAAPRASGTLEAHYAPHTPVVLL 240 Query: 251 ASAELPALLGKLAGIGQKVALIQREFRGDGVPGVTVIRPMPLTADAYAHDLYAALRDMDH 310 ++ L +L G++VAL+ F VP I +P YAHDLYAALR MD Sbjct: 241 EREQMHEALQQLHAHGKRVALMHHSFTAT-VPAAASIF-LPAQPALYAHDLYAALRAMDD 298 Query: 311 AGADLIVVESLPLSADWQGVNDRLRRAAFDSQGLLARLLQ 350 A AD+I+VES P W GVNDRLRRAA DS G+L LLQ Sbjct: 299 AHADVIMVESPPGDEAWNGVNDRLRRAAHDSSGILLTLLQ 338 >ref|YP_004754429.1| Sua5 YciO YrdC YwlC family protein [Collimonas fungivorans Ter331] gb|AEK63606.1| Sua5 YciO YrdC YwlC family protein [Collimonas fungivorans Ter331] Length = 344 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 237/335 (70%), Positives = 269/335 (80%) Query: 12 IDAAAIMHAARKLEQGGLVAFPTETVYGLGGDAENPAAIAAIYAAKGRPANHPVIVHVSP 71 ID AI AARKLE G LVAFPTETVYGLG DAEN AA+A+IYAAKGRP+NHPVIVHV+P Sbjct: 6 IDLQAIRLAARKLEAGALVAFPTETVYGLGADAENAAAVASIYAAKGRPSNHPVIVHVAP 65 Query: 72 EADIGYWAASVPVEARRLIASFWPGPLTLILKRAAHIPDAVAGGQDSVGVRCPSHPVAQA 131 EADI YW SVP +A+ LIA+FWPGPLTLIL RAAHIPD V+GGQ SVG+RCPSHPVAQA Sbjct: 66 EADIAYWVESVPPQAQALIAAFWPGPLTLILPRAAHIPDQVSGGQSSVGLRCPSHPVAQA 125 Query: 132 LLREFRGGKGGIAGPSANKFGHVSPTTAEHVREEFGSDADSLVDYVLDGGQSEVGIESTI 191 LLREF+GGKGGIAGPSANKFGHVSPTTA+HVR+EF ++ DS + +LDGGQSEVGIESTI Sbjct: 126 LLREFKGGKGGIAGPSANKFGHVSPTTAQHVRDEFDTEGDSPIACILDGGQSEVGIESTI 185 Query: 192 VDLSRIETHGPVLLRPGQISADRIAAVLGVPLATPDATAPRASGTLDAHYAPHTPVVQVA 251 +DLSRI HGPVLLRPG ISA +I AVLGV + DA APRASGTL++HYAP TPV+ V Sbjct: 186 IDLSRIAAHGPVLLRPGHISAAQIGAVLGVAVQAADAAAPRASGTLESHYAPRTPVLLVP 245 Query: 252 SAELPALLGKLAGIGQKVALIQREFRGDGVPGVTVIRPMPLTADAYAHDLYAALRDMDHA 311 SA+L +L ++ GQ +ALI G+P + PM A AYAHDLYAALR+MDHA Sbjct: 246 SAQLAGILQQMHQAGQNLALISYSAPAAGMPPLAAQFPMTAEAQAYAHDLYAALRNMDHA 305 Query: 312 GADLIVVESLPLSADWQGVNDRLRRAAFDSQGLLA 346 ADLIVVE+ P WQGVNDRLRRAA DS +LA Sbjct: 306 AADLIVVEAPPSGLAWQGVNDRLRRAAHDSSAVLA 340 >ref|ZP_04579195.1| translation factor SUA5 [Oxalobacter formigenes OXCC13] gb|EEO30168.1| translation factor SUA5 [Oxalobacter formigenes OXCC13] Length = 342 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 209/331 (63%), Positives = 255/331 (77%), Gaps = 3/331 (0%) Query: 20 AARKLEQGGLVAFPTETVYGLGGDAENPAAIAAIYAAKGRPANHPVIVHVSPEADIGYWA 79 AAR LE G LVAFPTETVYGLG DAEN A AAI+A K RPANHP+IVHV+P+ADIGYW+ Sbjct: 12 AARMLESGQLVAFPTETVYGLGADAENAVATAAIFALKNRPANHPLIVHVAPDADIGYWS 71 Query: 80 ASVPVEARRLIASFWPGPLTLILKRAAHIPDAVAGGQDSVGVRCPSHPVAQALLREFRGG 139 + +P EA++LI +FWPGPLTLILK+AAHIP AVAGGQDS+G+RCPSHPVAQALLR F+GG Sbjct: 72 SYIPDEAKKLIDAFWPGPLTLILKKAAHIPAAVAGGQDSIGLRCPSHPVAQALLRAFKGG 131 Query: 140 KGGIAGPSANKFGHVSPTTAEHVREEFGSDADSLVDYVLDGGQSEVGIESTIVDLSRIET 199 KGGIAGPSAN+FGHVSPT AEHVREEFG D + +L+GGQSEVGIESTI+DLSRIET Sbjct: 132 KGGIAGPSANRFGHVSPTRAEHVREEFGDDPR--LAAILEGGQSEVGIESTILDLSRIET 189 Query: 200 HGPVLLRPGQISADRIAAVLGVPLATPDATAPRASGTLDAHYAPHTPVVQVASAELPALL 259 GPVLLRPG+I + +IA V+G PDA APRASGTL +HYAP TPVV V +L ++L Sbjct: 190 AGPVLLRPGKIHSLQIAEVIGRMPEMPDAAAPRASGTLASHYAPLTPVVIVPEKDLTSVL 249 Query: 260 GKLAGIGQKVALIQ-REFRGDGVPGVTVIRPMPLTADAYAHDLYAALRDMDHAGADLIVV 318 +L +VAL+ D + + + D Y+H LYA+LR++D AD+I+V Sbjct: 250 KQLEKKNIRVALLHYSSLSSDRKQPLVKQTGLFCSPDVYSHQLYASLRELDRHRADVILV 309 Query: 319 ESLPLSADWQGVNDRLRRAAFDSQGLLARLL 349 E+ P + W+GVNDRLRRAA++ QG+L + L Sbjct: 310 EATPDTEAWKGVNDRLRRAAYNGQGILEKWL 340