BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2453.p (322 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775398.1| peptidyl/prolyl cis-trans isomerase [Herbasp... 239 3e-61 ref|YP_546135.1| hypothetical protein Mfla_2027 [Methylobacillus... 176 4e-42 ref|YP_004294361.1| peptidyl-prolyl cis-trans isomerase, EpsD fa... 163 4e-38 ref|YP_315556.1| hypothetical protein Tbd_1798 [Thiobacillus den... 117 3e-24 ref|YP_003049228.1| EpsD family peptidyl-prolyl cis-trans isomer... 116 6e-24 >ref|YP_003775398.1| peptidyl/prolyl cis-trans isomerase [Herbaspirillum seropedicae SmR1] gb|ADJ63490.1| peptidyl/prolyl cis-trans isomerase protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 152/279 (54%), Positives = 192/279 (68%), Gaps = 8/279 (2%) Query: 31 CGEKKAASGSSQVVAIVDGQEITIHQVNNELAKTGGTEVTKQLLDGLVARQLLVNAARKD 90 CG+++ A+ S Q +A VDG+EITIHQ+N EL K G E KQ+LDGLVARQ+LVNAARK+ Sbjct: 30 CGKQEQAA-SGQALASVDGKEITIHQLNAELGKGGAREANKQVLDGLVARQVLVNAARKE 88 Query: 91 KLDNDPAVVADMERARNLVLAQSYVAGKLKAPVRPSDQEIEDFYRKNPDWFAQRKQYEFA 150 KLD DPAV+ADMERAR+LVLAQSYV KL P RPS QE+ FY ++PDWFAQR+QYEFA Sbjct: 89 KLDADPAVLADMERARDLVLAQSYVQRKLAKPTRPSQQEVSTFYDQHPDWFAQRQQYEFA 148 Query: 151 QLIIAGTSLTPELNALMDQPGKRLDDVVGWLDSHRVQYARQQVVKTSADLPQQMNTSLKT 210 +L+I S+ EL +M + L++V WL + + R QV KTS DLP M +K Sbjct: 149 ELVIDRASVNEELTKMMVGV-RPLEEVAAWLQKQHIPFTRLQVTKTSMDLPPPMLAGVKK 207 Query: 211 MERGTMFVVIEGPTAILTSLQDVKNVPMTLAVASPQIAQYLVTLQQNQASEQLVERLKKD 270 ME+G +F+V EG AIL +L DV+NVP++ A A+ QI QYL +Q + +EQ V RLK D Sbjct: 208 MEKGQLFIVNEGDAAILAALADVRNVPLSRAAATQQIEQYLANQRQGEITEQAVARLKAD 267 Query: 271 AKIELTEQAKSFKDLSAAAPADKDGAAAQGSPGKDAASA 309 AKI + AK+ KD S A AD SPGKDAA+ Sbjct: 268 AKIVYFDSAKTLKDNSVAPVADAT------SPGKDAAAG 300 >ref|YP_546135.1| hypothetical protein Mfla_2027 [Methylobacillus flagellatus KT] gb|ABE50294.1| conserved hypothetical protein [Methylobacillus flagellatus KT] Length = 314 Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats. Identities = 117/324 (36%), Positives = 186/324 (57%), Gaps = 20/324 (6%) Query: 4 GKATVSWQHNVAAKALVSAMLLVALAACGEKKAASGSSQVVAIVDGQEITIHQVNNELAK 63 G + W + ALV+ M+ + L+ CG+K + +SQ +A V+G+EIT+HQ+N ELA+ Sbjct: 6 GSTIMQWS-KMTKGALVALMISIGLSGCGDKSNETKASQSLARVNGKEITVHQLNEELAR 64 Query: 64 TG-----GTEVTKQLLDGLVARQLLVNAARKDKLDNDPAVVADMERARNLVLAQSYVAGK 118 TKQ+L L+ RQLL AA K K+D DP V+ +ERA++ ++AQ+Y+ + Sbjct: 65 ANVQPAQKEAATKQILQSLIDRQLLEQAALKAKVDRDPNVMQAIERAKSQMIAQAYLQSR 124 Query: 119 LKAPVRPSDQEIEDFYRKNPDWFAQRKQYEFAQLIIAGTSLTPELNALMDQPGKRLDDVV 178 + +P E+E+FY++NP F++RK E Q++I + E + + K L +V Sbjct: 125 VANIGKPDKTEVENFYKQNPQLFSERKLVEMEQILIDSRYVNDEFKSALGS-FKTLQEVA 183 Query: 179 GWLDSHRVQYARQQVVKTSADLPQQMNTSLKTMERGTMFVVIEGPTAILTSLQDVKNVPM 238 WLD+ +QY R +V ++ A+LP Q++ LK RG +FV+ GP +L + VK P+ Sbjct: 184 AWLDAKGIQYDRGEVARSVAELPPQISERLKDARRGQLFVIGMGPRTMLVLMDSVKESPV 243 Query: 239 TLAVASPQIAQYLVTLQQNQASEQLVERLKKDAKIELTEQAKSFKDLSAAAPADKDGAAA 298 +LA A+PQI Q L+ ++ +A E ++RL+ +AKIE + D SA P + A Sbjct: 244 SLADATPQIEQMLLNKKRKEAGEAEIKRLRAEAKIE-------YLDKSAEVPQQPE-KAE 295 Query: 299 QGSPGKDAASADSEAIKRGVAGFK 322 Q P S+ + I RGV+G K Sbjct: 296 QSKP-----SSVDDDIARGVSGLK 314 >ref|YP_004294361.1| peptidyl-prolyl cis-trans isomerase, EpsD family [Nitrosomonas sp. AL212] gb|ADZ26199.1| peptidyl-prolyl cis-trans isomerase, EpsD family [Nitrosomonas sp. AL212] Length = 322 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 91/255 (35%), Positives = 158/255 (61%), Gaps = 6/255 (2%) Query: 25 LVALAACGEKKAASGSSQVVAIVDGQEITIHQVNNELAKTG-----GTEVTKQLLDGLVA 79 ++ L AC ++ S Q + V+G EIT+ Q+N+E+ ++ +QLL+ L+A Sbjct: 19 VLTLTACDKESNTKKSGQSIVSVNGSEITMLQLNDEIRRSNIRADQYESAREQLLESLIA 78 Query: 80 RQLLVNAARKDKLDNDPAVVADMERARNLVLAQSYVAGKLKAPVRPSDQEIEDFYRKNPD 139 RQL+V+ A ++KLD P V+ ERA V+AQ+Y+ G + +PS EIED+++KNP+ Sbjct: 79 RQLIVDEAIRNKLDRTPEVMQARERANAQVIAQAYLQGIISKIEKPSKAEIEDYFQKNPE 138 Query: 140 WFAQRKQYEFAQLIIAGTSLTPELNALMDQPGKRLDDVVGWLDSHRVQYARQQVVKTSAD 199 FAQRKQ++ + IA + ++ EL ++D K +++VV WLD +++QY R ++SAD Sbjct: 139 LFAQRKQFDLTTVRIATSDVSEELKRVIDA-AKSIEEVVTWLDKNKIQYFRTLATRSSAD 197 Query: 200 LPQQMNTSLKTMERGTMFVVIEGPTAILTSLQDVKNVPMTLAVASPQIAQYLVTLQQNQA 259 LP Q+ L+ + T++++ E +IL S+ +KN ++ A+PQI ++L+ + +A Sbjct: 198 LPLQLVLMLREKSKDTIYIINEQEKSILISVNAIKNNSVSETAAAPQIERFLINQKYKEA 257 Query: 260 SEQLVERLKKDAKIE 274 ++ + RL+ AKIE Sbjct: 258 TDAEITRLRTSAKIE 272 >ref|YP_315556.1| hypothetical protein Tbd_1798 [Thiobacillus denitrificans ATCC 25259] gb|AAZ97751.1| hypothetical protein Tbd_1798 [Thiobacillus denitrificans ATCC 25259] Length = 316 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 89/268 (33%), Positives = 138/268 (51%), Gaps = 10/268 (3%) Query: 17 KALVSAMLLVALAACGEKK----AASGSSQVVAIVDGQEITIHQVNNELA------KTGG 66 KA VS +L + CG+KK A +SQV A V+G E+T+HQVN L K Sbjct: 6 KAYVSLVLAALVTGCGDKKEEAAADKPASQVAAKVNGTELTVHQVNYALQRIPNLDKDQA 65 Query: 67 TEVTKQLLDGLVARQLLVNAARKDKLDNDPAVVADMERARNLVLAQSYVAGKLKAPVRPS 126 + Q++ LV ++L+V A ++KLD DP VV ++ AR +LA++Y+A KL P PS Sbjct: 66 KPASLQVVRNLVDQELVVQRALEEKLDRDPRVVQAVDSARRQILAEAYMARKLGTPSEPS 125 Query: 127 DQEIEDFYRKNPDWFAQRKQYEFAQLIIAGTSLTPELNALMDQPGKRLDDVVGWLDSHRV 186 D EI +++ +P+ FAQRK Y ++ I + + K L+D + WL + + Sbjct: 126 DGEISEYFNSHPEMFAQRKIYRLQEVSIQAPKEKHDAIRKQLEASKTLNDFLAWLKAENL 185 Query: 187 QYARQQVVKTSADLPQQMNTSLKTMERGTMFVVIEGPTAILTSLQDVKNVPMTLAVASPQ 246 Q VK + LP + L M G V ++ + D + P+TL A P Sbjct: 186 PAKVGQAVKPAEQLPAAVLPKLAQMPNGQALVANAPNGLLVLVVADSQAQPVTLEQAKPA 245 Query: 247 IAQYLVTLQQNQASEQLVERLKKDAKIE 274 IA+ L + +A++ ++ LK +AKIE Sbjct: 246 IARALQAETRQKAAKAELDALKANAKIE 273 >ref|YP_003049228.1| EpsD family peptidyl-prolyl cis-trans isomerase [Methylotenera mobilis JLW8] gb|ACT48701.1| peptidyl-prolyl cis-trans isomerase, EpsD family [Methylotenera mobilis JLW8] Length = 338 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 94/316 (29%), Positives = 159/316 (50%), Gaps = 11/316 (3%) Query: 16 AKALVSAMLLVALAACGEKKAASGSSQVVAIVDGQEITIHQVNNELAKTG-----GTEVT 70 A ++ AM L A + +A+ +SQ +A V+G EIT+HQVNNEL + Sbjct: 24 ALVVLVAMALQMTACNKKDNSAARASQTIARVNGDEITVHQVNNELQRANVKPEQQEAAA 83 Query: 71 KQLLDGLVARQLLVNAARKDKLDNDPAVVADMERARNLVLAQSYVAGKLKAPVRPSDQEI 130 KQ++ L+ RQ+LV AA K+D +P VV +E A+ +LAQ+Y+ KL + + +I Sbjct: 84 KQIVQALIDRQVLVQAAIDAKMDRNPRVVQAIESAKAQILAQAYIDEKLSQVAKVTVADI 143 Query: 131 EDFYRKNPDWFAQRKQYEFAQLIIAGTSLTPELNALMDQPGKRLDDVVGWLDSHRVQYAR 190 + + D FA RK Y +L + + + ELNA+ D+ K + +++ WLD H V+Y Sbjct: 144 AQYKTTHADVFADRKMYLMDELSLPLDAYSAELNAVADK-AKSMAEIMQWLDEHGVKYNH 202 Query: 191 QQVVKTSADLPQQMNTSLKTMERGTMFVVIEGPTAILTSLQDVKNVPMTLAVASPQIAQY 250 QQV S LP + L M+ + + ++ + +KN P Q+ Q Sbjct: 203 QQVAHASETLPSPLLAELSKMKLQDIIFIRARQGNVIAQILQIKNAPAADDDTKKQVEQL 262 Query: 251 LVTLQQNQASEQLVERLKKDAKIELTEQAKSFKDLSAAAPADK----DGAAAQGSPGKDA 306 ++ ++ E ++RL + AK+ ++ LS PA K + A A +P ++ Sbjct: 263 IIAEKRKAIIEAEMKRLHEAAKVIYLDRKFEPAALSDKPPAFKKPQIETAEAVSTPKSES 322 Query: 307 ASADSEA-IKRGVAGF 321 A+ A I++G++G Sbjct: 323 ATNKPAANIEKGLSGL 338