BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2448.p (360 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_546860.1| hypothetical protein Mfla_2756 [Methylobacillus... 234 2e-59 ref|ZP_08388936.1| PEP-CTERM putative exosortase interaction dom... 132 8e-29 ref|ZP_08535861.1| PPE-repeat protein [Methylophaga aminisulfidi... 114 2e-23 ref|ZP_08207686.1| hypothetical protein Y88_1954 [Novosphingobiu... 103 7e-20 ref|YP_001263331.1| hypothetical protein Swit_2840 [Sphingomonas... 74 3e-11 >ref|YP_546860.1| hypothetical protein Mfla_2756 [Methylobacillus flagellatus KT] gb|ABE51019.1| protein of unknown function DUF1555 [Methylobacillus flagellatus KT] Length = 338 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 146/297 (49%), Positives = 204/297 (68%), Gaps = 3/297 (1%) Query: 37 QTLQQFNLVVLGNATSNSHVDGRAWIGGSVTGGDYVQHSGSTPASNYAGLTVMGTASGLH 96 QT QQFN VV GN S S++ GRAW+GG+V GG+YV P S+YAGLTV G S Sbjct: 29 QTFQQFNAVVFGNIDSTSNLHGRAWVGGNVNGGEYVHRP--LPTSDYAGLTVQGNISNAR 86 Query: 97 VNGLGSYIGGSFTNSTVNSGSSYIAGSASGSNLNGPAYVAGSTNGVNFNGGRSSSPSTLM 156 V G+ I G+ TN++VN GS+ + G+AS +LNGP YVAG+ + + FNGG+ S+P+T + Sbjct: 87 VLAQGAVINGNLTNTSVNGGSTAVLGNASNGHLNGPGYVAGANSDIFFNGGQLSAPNTQL 146 Query: 157 QTNADAAGSTNFSNTLNSLSNSLKTATANSTVSVANNKATFNAVANNQGVAVFNLDNTTS 216 +TN AAGST+F + L+S S++LK+ +NS + KATF A A++ G+AVFNL + + Sbjct: 147 ETNIAAAGSTDFYSVLSSTSDNLKSLDSNSNATWTTQKATFTATADSNGLAVFNLSDADA 206 Query: 217 ASVFSVGEFSFAANGASTIIINSSVSSAVIGANFLGGQAQSLGKSIVWNFYNATSLIINN 276 ++F +GEF F N A+T++INSS+ I ANFLGG AQ + +++WNFYNA ++ + Sbjct: 207 MAIFGLGEFDFILNSATTVVINSSLKDIDISANFLGGSAQRIAGNVIWNFYNAETVDLGR 266 Query: 277 QFGGSILATHASLTNNQNIEGGVFVNSLTQNAELHLQSFTGNLAAVAPVPEPEQYLM 333 QFGGSILA A+LTN +IEG V+V++L Q ++H +FTGN+ A VPEP Y M Sbjct: 267 QFGGSILAADATLTNWADIEGNVYVSNLIQRGQIHQYAFTGNIPVTA-VPEPSSYAM 322 >ref|ZP_08388936.1| PEP-CTERM putative exosortase interaction domain protein [Sphingomonas sp. S17] gb|EGI54961.1| PEP-CTERM putative exosortase interaction domain protein [Sphingomonas sp. S17] Length = 350 Score = 132 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 127/347 (36%), Positives = 181/347 (52%), Gaps = 39/347 (11%) Query: 28 AATTSLTDAQTLQQFNLVVLGNATSNSHVDGRAWIGGSVTGGDYVQHSGSTPASNYA--G 85 A T + L+++NL+VLG+ TS+S V+GR ++GG+++G + S+YA G Sbjct: 19 AMATPVVGIDALKEWNLIVLGDLTSSSEVEGRTFVGGNLSGNSSNYQIRTPAPSSYAVPG 78 Query: 86 LTVMGTASGLHVN---GLGSYIGGSFTNS-TVNSGSSYIAGSASGSNLNGPAYVAGSTNG 141 LTV+G G N G G+ +GGS +N G + + SN N + S Sbjct: 79 LTVVGDVLGGTKNLNNGSGALVGGSVQGGFNLNGGVQTVKVGGTLSNTNINQNIVQS--- 135 Query: 142 VNFNGGRSSSPSTLMQTNADAAGSTNFSNTLNSLSNSLKTATANSTVSVANNKATFNAVA 201 G +S P + N T ++++ LSNS TA S+VS+A N+ATFNAVA Sbjct: 136 ----GLSASDPGFVAGLNQQ---KTLLASSMTDLSNSYAGLTATSSVSIAGNRATFNAVA 188 Query: 202 NNQGVAVFNLDNTTSASVFSVGEFSFAANGASTIIINSSVSSAVIGANFLGGQAQSLGKS 261 N GVAVFNL+ +A + GE +F NGA T+I+N + S+ + NFLG A LG+ Sbjct: 189 NANGVAVFNLN---AADLSRFGEIAFNRNGADTVIVNVTGSAVRLDDNFLG-DATGLGEH 244 Query: 262 IVWNFYNATSLIINNQFGGSILATHASLTNNQNIEGGVFVNSLTQNAELHLQSFTGNLAA 321 ++WNF ATSL + + GS+LA A+ T IEG SL QN E HL ++ G A Sbjct: 245 VIWNFPTATSLELTAAWKGSVLAPKAAATTANYIEGSAVFGSLIQNGEFHLGTYIGAYAP 304 Query: 322 VA----------------PVPEPEQYLMMLGGLAIVIGVAALRRRRV 352 + PVPEP +M GGLA+++ RRRRV Sbjct: 305 TSPQVPVTPGGSSGGSPTPVPEPATMALMAGGLALLV---LARRRRV 348 >ref|ZP_08535861.1| PPE-repeat protein [Methylophaga aminisulfidivorans MP] gb|EGL55330.1| PPE-repeat protein [Methylophaga aminisulfidivorans MP] Length = 371 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 121/333 (36%), Positives = 161/333 (48%), Gaps = 31/333 (9%) Query: 9 LATFAVAPLLSLGLFGVAHAATTSLTDAQTLQQFNLVVLGNATSNSHVDGRAWIGGSVTG 68 + A+ L++L + A+A + L Q+NL+ GN S S +DG A IGG+VTG Sbjct: 3 FSKLAMVGLVTLSVNQFAYADAVEIDAMSLLNQYNLITSGNVISTSEIDGNALIGGNVTG 62 Query: 69 GDYVQHSGSTPASNYAGLTVMGTASG-LHVNGLGSYIGGSFTNS-TVNSGSSYIAGSASG 126 G Y HS S LTV G +G + G G IGG+ + S +N G S SG Sbjct: 63 GMYNMHSTSNAV--VPSLTVGGDLNGTVQTKGKGVNIGGNVSGSLNINDGGDAYMNSVSG 120 Query: 127 -----SNLNGPAYVAGSTNG-VNFNGGRSSSPSTLMQ-TNADAAGST------------- 166 +N NG V G +G VN NGG + T A+ +G+ Sbjct: 121 WVQNNANGNGSTSVIGDISGSVNTNGGNTIYGGTNTGFAGANGSGTVINQPVSAPFDPAA 180 Query: 167 ---NFSNTLNSLSNSLKTATANSTVSVANNKATFNAVANNQGVAVFNLDNTTSASVFSVG 223 N NTL SN L NS ++ K TFNA N G+AVFN+++ S SV Sbjct: 181 AAANAVNTLGQFSNQLAGTDFNSNYTITGGKVTFNATPNTDGLAVFNINDGQSF-FESVN 239 Query: 224 EFSFAANGASTIIIN---SSVSSAVIGANFLGGQAQSLGKSIVWNFYNATSLIINNQFGG 280 EF+F A++I+ N ++S I NFL A L ++WNF +A SL I QFGG Sbjct: 240 EFAFNLGSATSILFNVFDDALSEYDISVNFLANSAVDLADMLLWNFVDADSLHITAQFGG 299 Query: 281 SILATHASLTNNQNIEGGVFVNSLTQNAELHLQ 313 SILA +T NIEG + SL QNAE+H Q Sbjct: 300 SILALGTDVTTYGNIEGTLVARSLNQNAEIHSQ 332 >ref|ZP_08207686.1| hypothetical protein Y88_1954 [Novosphingobium nitrogenifigens DSM 19370] gb|EGD60080.1| hypothetical protein Y88_1954 [Novosphingobium nitrogenifigens DSM 19370] Length = 360 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 104/298 (34%), Positives = 162/298 (54%), Gaps = 25/298 (8%) Query: 29 ATTSLTDAQTLQQFNLVVLGNATSNSHVDGRAWIGGSVTGGDY-VQHSGSTPASNYA--G 85 A++ + L+ +NLVVLGN TS+S V+GR ++GG++TG S S PA+ Y G Sbjct: 24 ASSEPSGLDALRTYNLVVLGNLTSSSEVEGRTFVGGNLTGNSSNYLISSSVPATTYTVPG 83 Query: 86 LTVMGTASGLHVN---GLGSYIGGSFTNSTVNSGSSY---IAGSASGSNLNGPAYVAGST 139 LTV+G +G N G G+ +GG+ ++ +G++ + G+ S +N+N Sbjct: 84 LTVVGDVTGGTKNLNNGSGAVVGGNVSSGFNLNGATQTVQVGGTISNTNVN--------Q 135 Query: 140 NGVNFNGGRSSSPSTLMQTNADAAGSTNFSNTLNSLSNSLKTATANSTVSVANNKATFNA 199 N V N G ++ T T + ST ++ LS L T + STVS++ + F A Sbjct: 136 NTVTSNLGATNPAFTQNLTQYGSLMST----SMKELSYQLSTQASTSTVSLSGSTGVFTA 191 Query: 200 VANNQGVAVFNLDNTTSASVFSVGEFSFAANGASTIIINSSVSSAVIGANFLGGQAQSLG 259 A + G AVFNL T+A + + F NGA T+I+N + + NFLGG +LG Sbjct: 192 QAGSGGTAVFNL---TAADLSKMSAIQFNTNGADTVIVNVTGDPITLNQNFLGG-TNNLG 247 Query: 260 KSIVWNFYNATSLIINNQFGGSILATHASLTNNQNIEGGVFVNSLTQNAELHLQSFTG 317 + ++WNF NAT+L + +GGS+LA A+ T I+G SLTQ+ E+H+ ++ G Sbjct: 248 QHVIWNFPNATNLTLTTAWGGSVLAPLANATTYNYIQGSAVFGSLTQDGEMHIGTYAG 305 >ref|YP_001263331.1| hypothetical protein Swit_2840 [Sphingomonas wittichii RW1] gb|ABQ69193.1| hypothetical protein Swit_2840 [Sphingomonas wittichii RW1] Length = 352 Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 105/360 (29%), Positives = 162/360 (45%), Gaps = 38/360 (10%) Query: 12 FAVAPLLSLGLFGVAHAATTSL--------TDAQTLQQFNLVVLGNATSNSHVDGRAWIG 63 F P++ GL VAHA S T L+++N+V N TS +HVDGR ++G Sbjct: 4 FRAFPIIVAGLMAVAHAGQASAALVGQSVSTGIAALKEWNVVSFNNFTSYNHVDGRVFVG 63 Query: 64 GSV-TGGDYVQHSGSTPASNYA--GLTVMGTAS-GLHVNGLGSYIGGSFTNSTVNSGSSY 119 G+ GG++ + + P+S+Y LTV+G+A+ VN G G + + N+ Sbjct: 64 GTFNAGGNFTIQNNNIPSSSYGTPALTVVGSAALNGSVNAGGGISVGGSVSGSFNNNGQN 123 Query: 120 IAGSASGSNLNGPAYVAGSTNGVNFNGGRSSSPSTLMQTNADAAGSTNFSNTLNSLSNSL 179 + + GSN + N F G STL + D S L SLS +L Sbjct: 124 VV-TYGGSN-------SAWANNTTFTQGAPDFTSTLQSQSNDIKAS------LISLSQNL 169 Query: 180 KTATANSTVSVANNKATFNAVANNQGVAVFNLDNTTSASVFSVGEFSFAANGASTIIINS 239 S VSV + G+ V N S + + +T++IN Sbjct: 170 AALGNTSGVSVGGDSNNQQITVTGSGLQVLNWSEAMFEGS-SNQQLLVSLPSDATLVINV 228 Query: 240 SVSSAVIGANFLGGQAQSLGKSIVWNFYNATSLIINNQFGGSILATHASLT--NNQNIEG 297 + + NF S +++NFY AT++ I QF GSIL A +T N+ NI+G Sbjct: 229 AGTDIDFDRNF---NRFSGDNRVLFNFYEATTVDIGRQFSGSILGVFADITGGNSGNIDG 285 Query: 298 GVFVNSLTQNA--ELHLQSFTGNLAA----VAPVPEPEQYLMMLGGLAIVIGVAALRRRR 351 V N++ QN+ E+H F G+L++ V+ PEP + M++ G +V + R RR Sbjct: 286 TVIGNNVRQNSNGEIHNNYFQGDLSSINGPVSVAPEPSTWAMLILGFGLVGAMMRTRNRR 345