BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2446.p         (133 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775393.1| transcription regulator protein [Herbaspiril...   214   3e-54
ref|YP_001100074.1| putative transcriptional regulator [Herminii...   177   5e-43
ref|YP_001353184.1| MerR family transcriptional regulator [Janth...   176   1e-42
ref|ZP_04575957.1| transcriptional regulator [Oxalobacter formig...   172   1e-41
ref|YP_003674700.1| MerR family transcriptional regulator [Methy...   172   1e-41

>ref|YP_003775393.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63485.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 135

 Score =  214 bits (545), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 112/133 (84%), Positives = 120/133 (90%)

Query: 1   MNDRVNKPAAIVLPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYY 60
           MNDRVNKPAAIVLPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYY
Sbjct: 1   MNDRVNKPAAIVLPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYY 60

Query: 61  QHHEVLLIRRIRELLYEQGFTISGARNKLDGTHEAEQPEQPQRPTISLDEAAIEVLRSDL 120
           QHHEVLLIRRIRELLYEQGFTISGARNKLDG++E EQPE  + P ISLDE  IE +R++L
Sbjct: 61  QHHEVLLIRRIRELLYEQGFTISGARNKLDGSNEPEQPEIVEPPAISLDEEGIEKVRAEL 120

Query: 121 LSVLATLKPGATA 133
           L +L  L+P A A
Sbjct: 121 LDILKVLRPEAVA 133


>ref|YP_001100074.1| putative transcriptional regulator [Herminiimonas arsenicoxydans]
 emb|CAL61949.1| Putative transcriptional regulatory protein MerR family
           [Herminiimonas arsenicoxydans]
          Length = 129

 Score =  177 bits (449), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 93/129 (72%), Positives = 103/129 (79%), Gaps = 1/129 (0%)

Query: 1   MNDRVNKPAAIVLPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYY 60
           MN+R+NK     LPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYY
Sbjct: 1   MNERINKAELAALPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYY 60

Query: 61  QHHEVLLIRRIRELLYEQGFTISGARNKLDG-THEAEQPEQPQRPTISLDEAAIEVLRSD 119
           QHHEVLLIRRIRELLYEQGFTISGARNKLD    EA   E      +++D  A+  +R +
Sbjct: 61  QHHEVLLIRRIRELLYEQGFTISGARNKLDSRILEARTDEDLPLDAVTIDPNAVLAIRKE 120

Query: 120 LLSVLATLK 128
           L+ +L  LK
Sbjct: 121 LMEILMLLK 129


>ref|YP_001353184.1| MerR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gb|ABR89045.1| transcriptional regulator, MerR family [Janthinobacterium sp.
           Marseille]
          Length = 130

 Score =  176 bits (445), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 93/132 (70%), Positives = 105/132 (79%), Gaps = 6/132 (4%)

Query: 1   MNDRVNKPAAIVLPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYY 60
           MN+R+ KP  + LPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYY
Sbjct: 1   MNERIQKPELVALPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYY 60

Query: 61  QHHEVLLIRRIRELLYEQGFTISGARNKLDG----THEAEQPEQPQRPTISLDEAAIEVL 116
           QHHEVLLIRRIRELLYEQGFTISGARNKLD      +  +       PT+  D+ A   +
Sbjct: 61  QHHEVLLIRRIRELLYEQGFTISGARNKLDSRILEANGDDDAVPDSGPTVDADQLAD--I 118

Query: 117 RSDLLSVLATLK 128
           R++L+ +LA LK
Sbjct: 119 RNELVEILALLK 130


>ref|ZP_04575957.1| transcriptional regulator [Oxalobacter formigenes HOxBLS]
 gb|EEO26919.1| transcriptional regulator [Oxalobacter formigenes HOxBLS]
          Length = 137

 Score =  172 bits (436), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 92/131 (70%), Positives = 108/131 (82%), Gaps = 4/131 (3%)

Query: 1   MNDRVNKPAAIVLPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYY 60
           MN+RV+K  A+VLP IPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYY
Sbjct: 1   MNERVHKSEAVVLPSIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYY 60

Query: 61  QHHEVLLIRRIRELLYEQGFTISGARNKLD--GTHEAEQPEQPQRPTISLDEAAI--EVL 116
           QHHEVLLIRRIRELLY+QGFTISGARNKL+  G  +    E P++  +++  + +  E +
Sbjct: 61  QHHEVLLIRRIRELLYDQGFTISGARNKLNERGARKVVAEEIPEKDEVAITGSFVDLETV 120

Query: 117 RSDLLSVLATL 127
           RS+L  +LA L
Sbjct: 121 RSELSEILALL 131


>ref|YP_003674700.1| MerR family transcriptional regulator [Methylotenera versatilis
           301]
 gb|ADI30123.1| transcriptional regulator, MerR family [Methylotenera versatilis
           301]
          Length = 140

 Score =  172 bits (436), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 91/133 (68%), Positives = 106/133 (79%), Gaps = 10/133 (7%)

Query: 11  IVLPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYYQHHEVLLIRR 70
           + LPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYYQHHEVLLIRR
Sbjct: 8   VQLPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYYQHHEVLLIRR 67

Query: 71  IRELLYEQGFTISGARNKLDGTHEAE-QPEQPQRPTISLDEAAIEV---------LRSDL 120
           IRELLYEQGFTISGARN+LDG  E+E + +  Q PT S   +++ V         ++++L
Sbjct: 68  IRELLYEQGFTISGARNRLDGPDESEIKADTVQSPTQSDLSSSLSVNNKEFDFTSVKAEL 127

Query: 121 LSVLATLKPGATA 133
           L +L  L+P  +A
Sbjct: 128 LEILNLLRPAVSA 140