BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2445.p         (176 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001353183.1| integration host factor alpha-subunit [Janth...   213   6e-54
ref|YP_001100075.1| integration host factor subunit alpha [Hermi...   213   9e-54
ref|YP_004752163.1| integration host factor subunit alpha [Colli...   207   5e-52
ref|ZP_08274684.1| Integration host factor alpha subunit [Oxalob...   206   1e-51
ref|YP_003775392.1| integration host factor alpha-subunit [Herba...   186   1e-45

>ref|YP_001353183.1| integration host factor alpha-subunit [Janthinobacterium sp.
           Marseille]
 gb|ABR88677.1| integration host factor alpha-subunit [Janthinobacterium sp.
           Marseille]
          Length = 165

 Score =  213 bits (543), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 116/129 (89%), Positives = 123/129 (95%)

Query: 40  MNNVNSNEFQSVLDADLHRAVLESQARSQADKNLPTLTKAELAELLFEQVGLNKREAKDM 99
           MN+VNS E QSVL ADL+RA++E+Q RSQA+KNLPTLTKAELAELLFEQVGLNKREAKDM
Sbjct: 29  MNDVNSAELQSVLAADLNRAMMEAQVRSQAEKNLPTLTKAELAELLFEQVGLNKREAKDM 88

Query: 100 VETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK 159
           VETFFDEIRNALERGE+VKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK
Sbjct: 89  VETFFDEIRNALERGESVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK 148

Query: 160 LKEMVELSS 168
           LK MVE SS
Sbjct: 149 LKGMVEDSS 157


>ref|YP_001100075.1| integration host factor subunit alpha [Herminiimonas
           arsenicoxydans]
 emb|CAL61950.1| Integration host factor subunit alpha (IHF-alpha) [Herminiimonas
           arsenicoxydans]
          Length = 151

 Score =  213 bits (542), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 117/138 (84%), Positives = 128/138 (92%)

Query: 31  SVEAQSFIAMNNVNSNEFQSVLDADLHRAVLESQARSQADKNLPTLTKAELAELLFEQVG 90
           +  A +   MN+VNS+E QSVL ADL+RA+LE+Q RSQA+K+LPTLTKAELAELLFEQVG
Sbjct: 6   ATRAVNITDMNDVNSSELQSVLAADLNRAMLEAQVRSQAEKDLPTLTKAELAELLFEQVG 65

Query: 91  LNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARR 150
           LNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARR
Sbjct: 66  LNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARR 125

Query: 151 VVTFHASQKLKEMVELSS 168
           VVTFHASQKLK MVE+S+
Sbjct: 126 VVTFHASQKLKSMVEVSN 143


>ref|YP_004752163.1| integration host factor subunit alpha [Collimonas fungivorans
           Ter331]
 gb|AEK61340.1| Integration host factor alpha subunit [Collimonas fungivorans
           Ter331]
          Length = 147

 Score =  207 bits (527), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 114/129 (88%), Positives = 124/129 (96%)

Query: 40  MNNVNSNEFQSVLDADLHRAVLESQARSQADKNLPTLTKAELAELLFEQVGLNKREAKDM 99
           MNN+ + EF+SVLDADL+RA+ E+QARSQA+KNLPTLTKAELAELLFEQVGLNKREAKDM
Sbjct: 1   MNNMQTVEFESVLDADLNRAMREAQARSQAEKNLPTLTKAELAELLFEQVGLNKREAKDM 60

Query: 100 VETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK 159
           VETFFDEIR+ALERGE+VKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK
Sbjct: 61  VETFFDEIRDALERGESVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK 120

Query: 160 LKEMVELSS 168
           LK MVE +S
Sbjct: 121 LKGMVEAAS 129


>ref|ZP_08274684.1| Integration host factor alpha subunit [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF31844.1| Integration host factor alpha subunit [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 137

 Score =  206 bits (523), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 113/126 (89%), Positives = 119/126 (94%)

Query: 40  MNNVNSNEFQSVLDADLHRAVLESQARSQADKNLPTLTKAELAELLFEQVGLNKREAKDM 99
           MN+V S EFQSVL ADL+RA+LE+Q RSQA+K LPTLTKAELAELLFEQVGLNKREAKDM
Sbjct: 1   MNDVISTEFQSVLSADLNRAMLEAQVRSQAEKELPTLTKAELAELLFEQVGLNKREAKDM 60

Query: 100 VETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK 159
           VETFFDEIR+ALERGE VKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK
Sbjct: 61  VETFFDEIRDALERGELVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK 120

Query: 160 LKEMVE 165
           LK MVE
Sbjct: 121 LKSMVE 126


>ref|YP_003775392.1| integration host factor alpha-subunit [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ63484.1| integration host factor alpha-subunit protein [Herbaspirillum
           seropedicae SmR1]
          Length = 104

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 101/104 (97%), Positives = 102/104 (98%)

Query: 73  LPTLTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQ 132
           +PTLTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQ
Sbjct: 1   MPTLTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQ 60

Query: 133 RPGRNPKTGEEIPITARRVVTFHASQKLKEMVELSSGDAVEMSV 176
           RPGRNPKTGEEIPITARRVVTFHASQKLKEMVELSSG  VEMSV
Sbjct: 61  RPGRNPKTGEEIPITARRVVTFHASQKLKEMVELSSGSPVEMSV 104