BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2441.p         (75 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_04578149.1| 50S ribosomal subunit protein A [Oxalobacter ...    91   8e-17
ref|ZP_04575952.1| LSU ribosomal protein L35P [Oxalobacter formi...    85   4e-15
ref|YP_986635.1| 50S ribosomal protein L35 [Acidovorax sp. JS42]...    79   2e-13
ref|ZP_03542301.1| ribosomal protein L35 [Comamonas testosteroni...    79   2e-13
ref|YP_001353179.1| 50S ribosomal subunit protein A [Janthinobac...    77   9e-13

>ref|ZP_04578149.1| 50S ribosomal subunit protein A [Oxalobacter formigenes OXCC13]
 gb|EEO29122.1| 50S ribosomal subunit protein A [Oxalobacter formigenes OXCC13]
          Length = 73

 Score = 90.5 bits (223), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 61/73 (83%), Positives = 66/73 (90%)

Query: 3  LSERTDSVMPKMKTKSSAKKRFRVRPGGTIKCGQAFKRHILTKKTTKVKRQLRGITNVNA 62
          +SE+T   MPKMKTKSSAKKRFRVRPGGT+KCGQAFKRHILTKKTTK KRQLRG TNVNA
Sbjct: 1  MSEKTGVNMPKMKTKSSAKKRFRVRPGGTVKCGQAFKRHILTKKTTKAKRQLRGATNVNA 60

Query: 63 ADVVSVMRMMPFA 75
          +DV SV+RMMP A
Sbjct: 61 SDVSSVLRMMPSA 73


>ref|ZP_04575952.1| LSU ribosomal protein L35P [Oxalobacter formigenes HOxBLS]
 gb|EEO26914.1| LSU ribosomal protein L35P [Oxalobacter formigenes HOxBLS]
          Length = 65

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 58/65 (89%), Positives = 62/65 (95%)

Query: 11 MPKMKTKSSAKKRFRVRPGGTIKCGQAFKRHILTKKTTKVKRQLRGITNVNAADVVSVMR 70
          MPKMKTKSSAKKRFRVRPGGT+KC QAFKRHILTKKTTKVKRQLRG+TNVNA+DV SV+R
Sbjct: 1  MPKMKTKSSAKKRFRVRPGGTVKCAQAFKRHILTKKTTKVKRQLRGMTNVNASDVSSVLR 60

Query: 71 MMPFA 75
          MMP A
Sbjct: 61 MMPSA 65


>ref|YP_986635.1| 50S ribosomal protein L35 [Acidovorax sp. JS42]
 ref|YP_002552912.1| 50S ribosomal protein l35 [Acidovorax ebreus TPSY]
 sp|A1W8I4|RL35_ACISJ RecName: Full=50S ribosomal protein L35
 sp|B9MHY0|RL35_DIAST RecName: Full=50S ribosomal protein L35
 gb|ABM42559.1| LSU ribosomal protein L35P [Acidovorax sp. JS42]
 gb|ACM32912.1| ribosomal protein L35 [Acidovorax ebreus TPSY]
          Length = 67

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/65 (76%), Positives = 56/65 (86%)

Query: 11 MPKMKTKSSAKKRFRVRPGGTIKCGQAFKRHILTKKTTKVKRQLRGITNVNAADVVSVMR 70
          MPKMKTKSSAKKRFRVRPGGT+K GQAFKRHILTKKTTK KR LRGI NV+  D+ S+ +
Sbjct: 1  MPKMKTKSSAKKRFRVRPGGTVKRGQAFKRHILTKKTTKNKRHLRGIVNVHEGDMGSIAK 60

Query: 71 MMPFA 75
          M+P A
Sbjct: 61 MLPSA 65


>ref|ZP_03542301.1| ribosomal protein L35 [Comamonas testosteroni KF-1]
 ref|YP_003279071.1| 50S ribosomal protein L35 [Comamonas testosteroni CNB-2]
 ref|ZP_07046934.1| 50S ribosomal protein L35 [Comamonas testosteroni S44]
 gb|EED66587.1| ribosomal protein L35 [Comamonas testosteroni KF-1]
 gb|ACY33775.1| ribosomal protein L35 [Comamonas testosteroni CNB-2]
 gb|EFI59445.1| 50S ribosomal protein L35 [Comamonas testosteroni S44]
          Length = 67

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/65 (76%), Positives = 57/65 (87%)

Query: 11 MPKMKTKSSAKKRFRVRPGGTIKCGQAFKRHILTKKTTKVKRQLRGITNVNAADVVSVMR 70
          MPKMKTKSSAKKRFRVRPGGT+K GQAFKRHILTKKTTK KR LRGI NV++ D+ S+ +
Sbjct: 1  MPKMKTKSSAKKRFRVRPGGTVKRGQAFKRHILTKKTTKNKRHLRGIVNVHSGDMGSIAK 60

Query: 71 MMPFA 75
          M+P A
Sbjct: 61 MLPSA 65


>ref|YP_001353179.1| 50S ribosomal subunit protein A [Janthinobacterium sp. Marseille]
 gb|ABR91645.1| 50S ribosomal subunit protein A [Janthinobacterium sp. Marseille]
          Length = 76

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 57/76 (75%), Positives = 63/76 (82%), Gaps = 1/76 (1%)

Query: 1  MELS-ERTDSVMPKMKTKSSAKKRFRVRPGGTIKCGQAFKRHILTKKTTKVKRQLRGITN 59
          MELS +RT+ VMPKMKTKSSAKKRFRVRPGGT+K GQAFKRHILTKKTTK KRQLRG   
Sbjct: 1  MELSLKRTECVMPKMKTKSSAKKRFRVRPGGTVKRGQAFKRHILTKKTTKNKRQLRGAVG 60

Query: 60 VNAADVVSVMRMMPFA 75
          V+  ++ SV  MMP A
Sbjct: 61 VHDTNMNSVRAMMPNA 76