BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2440.p         (112 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775387.1| translation initiation factor protein [Herba...   187   3e-46
ref|YP_001100080.1| protein chain initiation factor IF-3 [Hermin...   182   1e-44
emb|CAL61955.2| Translation initiation factor IF-3 [Herminiimona...   182   1e-44
ref|YP_001353178.1| translation initiation factor IF-3 [Janthino...   178   2e-43
ref|ZP_08273746.1| Translation initiation factor 3 [Oxalobactera...   177   4e-43

>ref|YP_003775387.1| translation initiation factor protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ63479.1| translation initiation factor protein [Herbaspirillum seropedicae
           SmR1]
          Length = 156

 Score =  187 bits (476), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 110/112 (98%), Positives = 112/112 (100%)

Query: 1   MDYGKFKYQEQKKAHEAKLKQKVIQVKEVKFRPGTDDGDYNIKLRNLTKFLEEGDKTKIT 60
           MDYGKFKYQEQKKAHEAKLKQKVIQVKEVKFRPGTDDGDYNIKLRNLTKFLE+GDKTKIT
Sbjct: 45  MDYGKFKYQEQKKAHEAKLKQKVIQVKEVKFRPGTDDGDYNIKLRNLTKFLEDGDKTKIT 104

Query: 61  LRFRGREMAHQEIGMRVLERLKADLEPYGQVEQFPKMEGRQMIMVLAPKKKK 112
           LRFRGREMAHQEIGMR+LERLKADLEPYGQVEQFPKMEGRQMIMVLAPKKKK
Sbjct: 105 LRFRGREMAHQEIGMRMLERLKADLEPYGQVEQFPKMEGRQMIMVLAPKKKK 156


>ref|YP_001100080.1| protein chain initiation factor IF-3 [Herminiimonas arsenicoxydans]
          Length = 154

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 103/112 (91%), Positives = 109/112 (97%)

Query: 1   MDYGKFKYQEQKKAHEAKLKQKVIQVKEVKFRPGTDDGDYNIKLRNLTKFLEEGDKTKIT 60
           MDYGKFKYQEQKKAHEAKLKQKVI +KEVKFRPGTDDGDYNIKLRNL KFL++GDKTKIT
Sbjct: 43  MDYGKFKYQEQKKAHEAKLKQKVILIKEVKFRPGTDDGDYNIKLRNLIKFLDDGDKTKIT 102

Query: 61  LRFRGREMAHQEIGMRVLERLKADLEPYGQVEQFPKMEGRQMIMVLAPKKKK 112
           LRFRGREMAHQ+IG R+LERLKADLEPYGQVEQFPKMEGRQMIMVL+PKKKK
Sbjct: 103 LRFRGREMAHQDIGFRMLERLKADLEPYGQVEQFPKMEGRQMIMVLSPKKKK 154


>emb|CAL61955.2| Translation initiation factor IF-3 [Herminiimonas arsenicoxydans]
          Length = 156

 Score =  182 bits (462), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 103/112 (91%), Positives = 109/112 (97%)

Query: 1   MDYGKFKYQEQKKAHEAKLKQKVIQVKEVKFRPGTDDGDYNIKLRNLTKFLEEGDKTKIT 60
           MDYGKFKYQEQKKAHEAKLKQKVI +KEVKFRPGTDDGDYNIKLRNL KFL++GDKTKIT
Sbjct: 45  MDYGKFKYQEQKKAHEAKLKQKVILIKEVKFRPGTDDGDYNIKLRNLIKFLDDGDKTKIT 104

Query: 61  LRFRGREMAHQEIGMRVLERLKADLEPYGQVEQFPKMEGRQMIMVLAPKKKK 112
           LRFRGREMAHQ+IG R+LERLKADLEPYGQVEQFPKMEGRQMIMVL+PKKKK
Sbjct: 105 LRFRGREMAHQDIGFRMLERLKADLEPYGQVEQFPKMEGRQMIMVLSPKKKK 156


>ref|YP_001353178.1| translation initiation factor IF-3 [Janthinobacterium sp.
           Marseille]
 gb|ABR88531.1| translation initiation factor IF-3 [Janthinobacterium sp.
           Marseille]
          Length = 154

 Score =  178 bits (451), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 102/112 (91%), Positives = 109/112 (97%)

Query: 1   MDYGKFKYQEQKKAHEAKLKQKVIQVKEVKFRPGTDDGDYNIKLRNLTKFLEEGDKTKIT 60
           MDYGKFKYQEQKKAHEAKLKQK+I VKEVKFRPGTDDGDYNIKLRNL KFLE+GDKTKIT
Sbjct: 43  MDYGKFKYQEQKKAHEAKLKQKIILVKEVKFRPGTDDGDYNIKLRNLIKFLEDGDKTKIT 102

Query: 61  LRFRGREMAHQEIGMRVLERLKADLEPYGQVEQFPKMEGRQMIMVLAPKKKK 112
           LRFRGREMAHQ+IG+R+LERLK DLEPYGQVEQ+PKMEGRQMIMVL+PKKKK
Sbjct: 103 LRFRGREMAHQDIGVRMLERLKQDLEPYGQVEQWPKMEGRQMIMVLSPKKKK 154


>ref|ZP_08273746.1| Translation initiation factor 3 [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF32783.1| Translation initiation factor 3 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 154

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 100/112 (89%), Positives = 108/112 (96%)

Query: 1   MDYGKFKYQEQKKAHEAKLKQKVIQVKEVKFRPGTDDGDYNIKLRNLTKFLEEGDKTKIT 60
           MDYGKFKYQEQK+AHEAKL+QK+I VKEVKFRPGTDDGDY IKLRNL KFL+EGDKTKIT
Sbjct: 43  MDYGKFKYQEQKRAHEAKLRQKIILVKEVKFRPGTDDGDYGIKLRNLIKFLDEGDKTKIT 102

Query: 61  LRFRGREMAHQEIGMRVLERLKADLEPYGQVEQFPKMEGRQMIMVLAPKKKK 112
           LRFRGREMAHQ+IG+R+LERLK DLEPYGQVEQ+PKMEGRQMIMVLAPKKKK
Sbjct: 103 LRFRGREMAHQDIGVRMLERLKLDLEPYGQVEQWPKMEGRQMIMVLAPKKKK 154