BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2438.p         (135 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775385.1| chemotaxis regulator protein [Herbaspirillum...   222   1e-56
ref|YP_003774976.1| chemotaxis regulator protein [Herbaspirillum...   211   2e-53
ref|YP_003775118.1| chemotaxis response regulator receiver domai...   192   9e-48
ref|ZP_08274848.1| Chemotaxis regulator - transmits chemorecepto...   168   2e-40
ref|YP_283962.1| response regulator receiver [Dechloromonas arom...   163   8e-39

>ref|YP_003775385.1| chemotaxis regulator protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63477.1| chemotaxis regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 135

 Score =  222 bits (566), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 123/135 (91%), Positives = 128/135 (94%)

Query: 1   MAADDQYFLVVDDFSTMRRIVSGLLKELEYTKMVEADDGSSALKILEAGALPVTFVLTDW 60
           MAADDQYFLVVDDFSTMRRIVSGLLKELEYTK+VEADDGSSALKILEAGALPVTFVLTDW
Sbjct: 1   MAADDQYFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSSALKILEAGALPVTFVLTDW 60

Query: 61  NMPGMDGLTLLKRIRVTPSLAHLPVLMITAEAKKENIVMAAQSGADGYIVKPFTAATLKE 120
           NMP MDGLTLLK+IR TPS+AHLPVLMITAEAKKENIV AAQSGADGYIVKPF AATLK+
Sbjct: 61  NMPVMDGLTLLKKIRATPSMAHLPVLMITAEAKKENIVEAAQSGADGYIVKPFNAATLKD 120

Query: 121 KIEKILARRATMVSA 135
           KIEKILARRA +  A
Sbjct: 121 KIEKILARRAHLAKA 135


>ref|YP_003774976.1| chemotaxis regulator protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63068.1| chemotaxis regulator transmits chemoreceptor signals to flagellar
           motor components protein [Herbaspirillum seropedicae
           SmR1]
          Length = 133

 Score =  211 bits (538), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 115/132 (87%), Positives = 123/132 (93%)

Query: 1   MAADDQYFLVVDDFSTMRRIVSGLLKELEYTKMVEADDGSSALKILEAGALPVTFVLTDW 60
           MAA +Q+FLVVDDFSTMRRIVSGLLKELEYTK+VEADDGSSALKILE+GA  +TFVLTDW
Sbjct: 1   MAATEQHFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSSALKILESGASNITFVLTDW 60

Query: 61  NMPGMDGLTLLKRIRVTPSLAHLPVLMITAEAKKENIVMAAQSGADGYIVKPFTAATLKE 120
           NMP MDGLTLLK+IR TP+L+HLPVLMITAEAKKENIVMAAQ GADGYIVKPF A TLKE
Sbjct: 61  NMPVMDGLTLLKKIRSTPALSHLPVLMITAEAKKENIVMAAQEGADGYIVKPFNATTLKE 120

Query: 121 KIEKILARRATM 132
           KIEKILARRA M
Sbjct: 121 KIEKILARRAHM 132


>ref|YP_003775118.1| chemotaxis response regulator receiver domain-containing protein
           [Herbaspirillum seropedicae SmR1]
 gb|ADJ63210.1| chemotaxis response regulator receiver domain protein
           [Herbaspirillum seropedicae SmR1]
          Length = 134

 Score =  192 bits (489), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 97/130 (74%), Positives = 116/130 (89%)

Query: 3   ADDQYFLVVDDFSTMRRIVSGLLKELEYTKMVEADDGSSALKILEAGALPVTFVLTDWNM 62
           + DQ+FLVVDDFSTMRRI+ GLLKELEY K+ +ADDG+SA KILE+GALP++FV+TDWNM
Sbjct: 2   STDQHFLVVDDFSTMRRIIIGLLKELEYLKVTDADDGTSAWKILESGALPISFVITDWNM 61

Query: 63  PGMDGLTLLKRIRVTPSLAHLPVLMITAEAKKENIVMAAQSGADGYIVKPFTAATLKEKI 122
           PGMDGL LLK+IR TP L  LPVLM++AEAKKENIV+AA++GADGYIVKPF AATL +KI
Sbjct: 62  PGMDGLGLLKKIRETPRLKRLPVLMVSAEAKKENIVLAAETGADGYIVKPFNAATLDDKI 121

Query: 123 EKILARRATM 132
            KIL RR++M
Sbjct: 122 SKILQRRSSM 131


>ref|ZP_08274848.1| Chemotaxis regulator - transmits chemoreceptor signals to
           flagelllar motor components CheY [Oxalobacteraceae
           bacterium IMCC9480]
 gb|EGF31677.1| Chemotaxis regulator - transmits chemoreceptor signals to
           flagelllar motor components CheY [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 152

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 85/131 (64%), Positives = 112/131 (85%), Gaps = 3/131 (2%)

Query: 3   ADDQYFLVVDDFSTMRRIVSGLLKELEYTKMVEADDGSSALKILEAG---ALPVTFVLTD 59
           A +  FLVVDDFSTMRRI+SGLLKE+ ++K+ EA+DG++AL++L++     +P+ FV+TD
Sbjct: 19  ASELNFLVVDDFSTMRRIISGLLKEIGHSKIHEAEDGAAALRLLQSAQTHGVPIDFVITD 78

Query: 60  WNMPGMDGLTLLKRIRVTPSLAHLPVLMITAEAKKENIVMAAQSGADGYIVKPFTAATLK 119
           WNMP MDGL LLKRIR+ P+L HLPVLM+TAE+KKENI+ AA +GADGYIVKPFTAATLK
Sbjct: 79  WNMPVMDGLELLKRIRLDPALNHLPVLMVTAESKKENIIAAAHAGADGYIVKPFTAATLK 138

Query: 120 EKIEKILARRA 130
           EK++KI+ ++ 
Sbjct: 139 EKLDKIMLKKG 149


>ref|YP_283962.1| response regulator receiver [Dechloromonas aromatica RCB]
 gb|AAZ45492.1| Response regulator receiver [Dechloromonas aromatica RCB]
          Length = 131

 Score =  163 bits (412), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 90/129 (69%), Positives = 103/129 (79%), Gaps = 3/129 (2%)

Query: 1   MAADDQY-FLVVDDFSTMRRIVSGLLKELEYTKMVEADDGSSALKILEAGALPVTFVLTD 59
           MAAD +  FLVVDDFSTMRRIV  LLKEL YT + EA+DG+ AL+ L+AG     FV+TD
Sbjct: 1   MAADPKMRFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGAIALQKLQAGGF--EFVVTD 58

Query: 60  WNMPGMDGLTLLKRIRVTPSLAHLPVLMITAEAKKENIVMAAQSGADGYIVKPFTAATLK 119
           WNMP MDGLTLL+ IR TP+L HLPVLMITAEAKKENI+ AAQ+GA GYIVKPFTA TL 
Sbjct: 59  WNMPNMDGLTLLQTIRATPNLKHLPVLMITAEAKKENIIAAAQAGASGYIVKPFTAGTLS 118

Query: 120 EKIEKILAR 128
           EK+ KI  +
Sbjct: 119 EKLNKIFEK 127