BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2437.p         (97 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775384.1| (p)ppGpp synthetase I [Herbaspirillum serope...   184   3e-45
ref|YP_004752270.1| GTP pyrophosphokinase [Collimonas fungivoran...   164   4e-39
ref|YP_001353176.1| GTP pyrophosphokinase [Janthinobacterium sp....   154   5e-36
ref|ZP_08274732.1| GTP pyrophosphokinase [Oxalobacteraceae bacte...   151   4e-35
ref|YP_001100082.1| (p)ppGpp synthetase I [Herminiimonas arsenic...   146   8e-34

>ref|YP_003775384.1| (p)ppGpp synthetase I [Herbaspirillum seropedicae SmR1]
 gb|ADJ63476.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 749

 Score =  184 bits (468), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 95/97 (97%), Positives = 96/97 (98%)

Query: 1   MSLHAPERVIQTTWGAPARDTVYPVDIFVLASDRQGLLRDISDIFLRDKINVIGVSTQSV 60
           MS HAPERVIQTTWGAPAR+TVYPVDIFVLASDRQGLLRDISDIFLRDKINVIGVSTQSV
Sbjct: 653 MSSHAPERVIQTTWGAPARETVYPVDIFVLASDRQGLLRDISDIFLRDKINVIGVSTQSV 712

Query: 61  KGHARMAFTAEIGSTEQLQKALTVIREVKGVIEAKRQ 97
           KGHARMAFTAEIGSTEQLQKALTVIREVKGVIEAKRQ
Sbjct: 713 KGHARMAFTAEIGSTEQLQKALTVIREVKGVIEAKRQ 749


>ref|YP_004752270.1| GTP pyrophosphokinase [Collimonas fungivorans Ter331]
 gb|AEK61447.1| GTP pyrophosphokinase [Collimonas fungivorans Ter331]
          Length = 757

 Score =  164 bits (415), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 83/97 (85%), Positives = 89/97 (91%)

Query: 1   MSLHAPERVIQTTWGAPARDTVYPVDIFVLASDRQGLLRDISDIFLRDKINVIGVSTQSV 60
           M + APERVIQTTWGAP  +TVYPVDIFVLASDRQGLLRDIS++FLR+KINVIGVSTQS 
Sbjct: 661 MRIKAPERVIQTTWGAPEAETVYPVDIFVLASDRQGLLRDISEVFLREKINVIGVSTQSA 720

Query: 61  KGHARMAFTAEIGSTEQLQKALTVIREVKGVIEAKRQ 97
           K HARMAFTAEI ST QLQKALTVIREVKGV+EAKRQ
Sbjct: 721 KAHARMAFTAEIASTAQLQKALTVIREVKGVLEAKRQ 757


>ref|YP_001353176.1| GTP pyrophosphokinase [Janthinobacterium sp. Marseille]
 gb|ABR88739.1| GTP pyrophosphokinase [Janthinobacterium sp. Marseille]
          Length = 759

 Score =  154 bits (388), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 80/97 (82%), Positives = 82/97 (84%)

Query: 1   MSLHAPERVIQTTWGAPARDTVYPVDIFVLASDRQGLLRDISDIFLRDKINVIGVSTQSV 60
           M   APERVIQT WG P   TVYPVDIFVLA DRQGLLRDISDIFLR+KINVIGVSTQSV
Sbjct: 663 MRTKAPERVIQTAWGRPESATVYPVDIFVLAGDRQGLLRDISDIFLREKINVIGVSTQSV 722

Query: 61  KGHARMAFTAEIGSTEQLQKALTVIREVKGVIEAKRQ 97
           KG ARMAFTAEI ST QLQKAL VIREV GV+EAKR 
Sbjct: 723 KGQARMAFTAEIASTAQLQKALNVIREVSGVLEAKRH 759


>ref|ZP_08274732.1| GTP pyrophosphokinase [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF31806.1| GTP pyrophosphokinase [Oxalobacteraceae bacterium IMCC9480]
          Length = 757

 Score =  151 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 74/96 (77%), Positives = 85/96 (88%)

Query: 1   MSLHAPERVIQTTWGAPARDTVYPVDIFVLASDRQGLLRDISDIFLRDKINVIGVSTQSV 60
           M +  PERVIQT+WG  A +TVYPVDIFVLA+DRQGLLRDIS++FLR+KINV+GVSTQS 
Sbjct: 661 MQIQTPERVIQTSWGNSAAETVYPVDIFVLAADRQGLLRDISEVFLREKINVVGVSTQSA 720

Query: 61  KGHARMAFTAEIGSTEQLQKALTVIREVKGVIEAKR 96
           KGHARMAFTAEIGST QL KAL+VIREV GV+E +R
Sbjct: 721 KGHARMAFTAEIGSTAQLMKALSVIREVDGVMEVRR 756


>ref|YP_001100082.1| (p)ppGpp synthetase I [Herminiimonas arsenicoxydans]
 emb|CAL61957.1| GTP pyrophosphokinase [Herminiimonas arsenicoxydans]
          Length = 761

 Score =  146 bits (369), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 77/97 (79%), Positives = 81/97 (83%)

Query: 1   MSLHAPERVIQTTWGAPARDTVYPVDIFVLASDRQGLLRDISDIFLRDKINVIGVSTQSV 60
           M   APERV+QT WG     TVYPVDIFVLASDRQGLLRDISDIFLR+KINVIGVSTQSV
Sbjct: 665 MRHKAPERVVQTAWGKTESATVYPVDIFVLASDRQGLLRDISDIFLREKINVIGVSTQSV 724

Query: 61  KGHARMAFTAEIGSTEQLQKALTVIREVKGVIEAKRQ 97
           KG ARMAFTAEI ST QLQKAL VI EVKGV+ A+R 
Sbjct: 725 KGQARMAFTAEIASTAQLQKALAVIGEVKGVLAARRH 761