BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2435.p (944 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768204.1| hypothetical protein blr1564 [Bradyrhizobium ja... 169 3e-39 ref|ZP_06157798.1| hypothetical protein VDA_000252 [Photobacteri... 138 4e-30 ref|ZP_02882941.1| response regulator receiver protein [Burkhold... 134 8e-29 ref|YP_001742406.1| hypothetical protein EcSMS35_0301 [Escherich... 110 1e-21 ref|YP_001367434.1| response regulator receiver protein [Shewane... 110 2e-21 >ref|NP_768204.1| hypothetical protein blr1564 [Bradyrhizobium japonicum USDA 110] dbj|BAC46829.1| blr1564 [Bradyrhizobium japonicum USDA 110] Length = 942 Score = 169 bits (427), Expect = 3e-39, Method: Composition-based stats. Identities = 99/257 (38%), Positives = 144/257 (56%), Gaps = 13/257 (5%) Query: 14 TRHIVIAVHGIRTFADWYGRLRDLLLEQNPKIEIEKLHFGYFSFFLLIFPWFRRLAAERF 73 +R I+I VHGIRTF +W RL+ L+ + NP I+++ +GYFS + P FR LA F Sbjct: 4 SRTILITVHGIRTFGEWQERLKSLVQDANPNIDVKSYRYGYFSVIAFLIPIFRWLAVRSF 63 Query: 74 AGLLIDRLRELDGHKVDIVAHSFGTFIVATALERIKREAVTSPNTPIIKNLILSGSVLKH 133 L + +RE G + IV HSFGT +VA AL IK + + P+I LILSGSVL+ Sbjct: 64 RNRLREIIRENPGSPITIVCHSFGTHLVAHALRGIKPDEL-----PVIPALILSGSVLRS 118 Query: 134 SFAWREFCPRFVGR---IINDCGTHDIALLFSMFFLVGLGYGGRRGFDGIENLQFFNRFF 190 +F WR R G+ ++NDCGT+D L+ S ++ G GR GF G + NR+F Sbjct: 119 NFNWRRL--RATGKLKLVVNDCGTNDGILVLSQMLVLLTGMAGRVGFYGFTDDFIVNRYF 176 Query: 191 EFGHSGFFKKNGKPYDQFMIENWLPIFLRNQVPEVVDPRNV--SRKAWWYAWLETWADPL 248 GHS +F+ G D FM E W+PI Q P+ ++ + + +A++ ADPL Sbjct: 177 AGGHSHYFRPVGNDPDSFMREWWVPIAALAQAPKPAGALSLGGTLQGVLHAFMRI-ADPL 235 Query: 249 KMAVHVVIFLMLPFSGW 265 K ++ + +L F G+ Sbjct: 236 KGGLYFGLIAILVFFGY 252 >ref|ZP_06157798.1| hypothetical protein VDA_000252 [Photobacterium damselae subsp. damselae CIP 102761] gb|EEZ39236.1| hypothetical protein VDA_000252 [Photobacterium damselae subsp. damselae CIP 102761] Length = 391 Score = 138 bits (348), Expect = 4e-30, Method: Composition-based stats. Identities = 72/212 (33%), Positives = 115/212 (54%), Gaps = 7/212 (3%) Query: 19 IAVHGIRTFADWYGRLRDLLLEQNPKIEIEKLHFGYFSFFLLIFPWFRRLAAERFAGLLI 78 ++VHGIRTF W L+ + + E +GYF+ P+ R L ++F L+ Sbjct: 151 LSVHGIRTFGKWQQDLKKTIESHVSSVNFEHYKYGYFTVISFFIPFLRNLQVKKFKQALL 210 Query: 79 DRLRELDGHKVDIVAHSFGTFIVATALERIKREAVTSPNTPIIKNLILSGSVLKHSFAWR 138 + ++ + ++ I HSFGT++V A++ + + N I L+L+GSVLK ++ + Sbjct: 211 EIIKRKNDDEIIIFCHSFGTYVVVNAIDSLIKNGA---NCNKISKLVLAGSVLKSNYDFT 267 Query: 139 EFCPRFVGRIINDCGTHDIALLFSMFFLVGLGYGGRRGFDGIENLQFFNRFFEFGHSGFF 198 + +IINDCG +D LL S F+ G GR GF G+ N +F NR+F GHS +F Sbjct: 268 NILTQTNMKIINDCGYNDNILLLSEGFVPNTGMAGRVGFYGLNNQRFSNRYFSGGHSHYF 327 Query: 199 KKNGKPYDQFMIENWLPIFLRNQVPEVVDPRN 230 K+ + F+ + WLP+F R+ +VD RN Sbjct: 328 DKS----NNFIEKYWLPLFFRDSDLNIVDDRN 355 >ref|ZP_02882941.1| response regulator receiver protein [Burkholderia graminis C4D1M] gb|EDT11225.1| response regulator receiver protein [Burkholderia graminis C4D1M] Length = 392 Score = 134 bits (337), Expect = 8e-29, Method: Composition-based stats. Identities = 81/220 (36%), Positives = 108/220 (49%), Gaps = 11/220 (5%) Query: 11 SQPTRHIVIAVHGIRTFADWYGRLRDLLLEQNPKIEIEKLHFGYFSFFLLIFPWFRRLAA 70 + PT V+ VHGIRTF W +L+ ++ E +E +GYFS F L+ P+FR Sbjct: 147 ANPTH--VLTVHGIRTFGAWQSKLKRVVREHVGGVEFHTYRYGYFSAFALLLPFFRTREV 204 Query: 71 ERFAGLLIDRLRELDGHKVDIVAHSFGTFIVATALERIKREAVTSPNTPIIKNLILSGSV 130 +RF L L ++ I HSFGTFIV+ AL+R+ + P ++ ++L+GSV Sbjct: 205 DRFYRHLCQFLEVHPDKELVIFCHSFGTFIVSNALKRMLQTERLVP----VRTIVLAGSV 260 Query: 131 LKHSFAWREFCPRFVGRIINDCGTHDIALLFSMFFLVGLGYGGRRGFDGIENLQFFNRFF 190 L F W RI+N+CG D L + LG GR GF GI N F NRFF Sbjct: 261 LPSRFDWSFALASKRLRIVNECGIKDYVLCLCDALVPLLGMAGRTGFHGINNQNFVNRFF 320 Query: 191 EFGHSGFFKKNGKPYDQFMIENWLPIFLRNQVPEVVDPRN 230 GH +FK F WLP+ Q VD RN Sbjct: 321 IGGHDLYFKDT-----SFFQRYWLPLINPTQPIPDVDERN 355 >ref|YP_001742406.1| hypothetical protein EcSMS35_0301 [Escherichia coli SMS-3-5] gb|ACB17312.1| conserved domain protein [Escherichia coli SMS-3-5] Length = 387 Score = 110 bits (275), Expect = 1e-21, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 104/206 (50%), Gaps = 14/206 (6%) Query: 17 IVIAVHGIRTFADWYGRLRDLLLEQNPKIEIEKLHFGYFSFFLLIFPWFRRLAAERFAGL 76 ++I VHGIRT+A W + + + + K K ++G+ + +FP R L A + Sbjct: 151 VLITVHGIRTYAPWQNTIEEKITNISNKFNYIKFNYGFLNILCFLFPPTRHLFARKIIQD 210 Query: 77 LIDRLRELDGHKVDIVAHSFGTFIVATALERIKREAVTSPNTPIIKNLILSGSVLKHSFA 136 + + ++ I+ HSFGT++V AL ++ I+ LI SGSVLK + + Sbjct: 211 IRITVESNKNKRIYIICHSFGTYLVYCALSKLTHTDAK------IECLIFSGSVLKRTTS 264 Query: 137 WREFCPRFVGRIINDCGTHDIALLFSMFFLVGLGYGGRRGFDGIENLQFFNRFFEFGHSG 196 + + IINDC D LL ++GLG GR+GF + F NR+F+ GHS Sbjct: 265 LKTL-KQHCNAIINDCAVSDYILLLCKMLVIGLGDAGRKGFIEPNDGVFINRYFKGGHST 323 Query: 197 FFKKNGKPYDQFMIE-NWLPIFLRNQ 221 +F+ D+ IE NWLP+ N+ Sbjct: 324 YFE------DKDFIEVNWLPLIFDNK 343 >ref|YP_001367434.1| response regulator receiver protein [Shewanella baltica OS185] gb|ABS09371.1| response regulator receiver protein [Shewanella baltica OS185] Length = 386 Score = 110 bits (274), Expect = 2e-21, Method: Composition-based stats. Identities = 67/187 (35%), Positives = 95/187 (50%), Gaps = 8/187 (4%) Query: 14 TRHIVIAVHGIRTFADWYGRL-RDLLLEQNPKIEIEKLHFGYFSFFLLIFPWFRRLAAER 72 T+ I+ +VHGI T +W L ++L L+ N I I + +F + P R + R Sbjct: 150 TKKIIYSVHGIETNGEWQKELSKNLNLDSNEYIHIPH-EYNFFPLLSFLIPPLRWIEVRR 208 Query: 73 FAGLLIDRLRELDGHKVDIVAHSFGTFIVATALERIKREAVTSPNTPIIKNLILSGSVLK 132 F L + G + ++ HSFGT+++A +L+ I + + TP +IL GSVLK Sbjct: 209 FKKELEFMAEKHPGCCITLIGHSFGTYLIAKSLKNISQTS-----TPYFDRIILCGSVLK 263 Query: 133 HSFAWREFCPRF-VGRIINDCGTHDIALLFSMFFLVGLGYGGRRGFDGIENLQFFNRFFE 191 S+ W E R + I+NDC +D L+ S F VGLG GR GF NRFF Sbjct: 264 ASYDWDEIIRRHNIKSILNDCALNDRPLVMSQAFAVGLGMAGRVGFKRKHGQLIENRFFN 323 Query: 192 FGHSGFF 198 GHS FF Sbjct: 324 GGHSDFF 330