BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2426.p (258 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001796732.1| hypothetical protein RALTA_B0297 [Cupriavidu... 128 8e-28 ref|YP_001862228.1| peptidase M23B [Burkholderia phymatum STM815... 124 2e-26 ref|ZP_02305859.1| conserved hypothetical protein [Yersinia pest... 105 6e-21 ref|YP_003567516.1| putative kinase [Yersinia pestis Z176003] >g... 105 7e-21 gb|ACY58218.1| putative kinase [Yersinia pestis D106004] 105 7e-21 >ref|YP_001796732.1| hypothetical protein RALTA_B0297 [Cupriavidus taiwanensis LMG 19424] emb|CAP63495.1| Conserved hypothetical protein; putative chitinase [Cupriavidus taiwanensis LMG 19424] Length = 725 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 82/221 (37%), Positives = 121/221 (54%), Gaps = 36/221 (16%) Query: 55 NTPSHGTSEELREKYRAEINKCCFKYGLN-SRLRMAHFFGQAAVESESLNRMLERSDGSQ 113 +T + S E+RE+YR ++NK KY LN S R+AHF GQ A ES +L M ER + Sbjct: 518 DTARNALSHEVRERYRTQLNKVVRKYHLNASSYRLAHFLGQGAEESRTLTLMFERRSEAS 577 Query: 114 ----YEGRTDIGNITAGDGRKFKGRGIKQLTGRYNYAEYWSFRGWLKKGGDFDVGWDVKK 169 Y GR +GN GD +++GRG+KQLTG+YNY EYW +RGW+ + FD W ++ Sbjct: 578 CNQLYSGR--LGNDLLGDAFRYRGRGMKQLTGKYNYTEYWVYRGWIAR-ESFDRSWWERR 634 Query: 170 KDGTNESKPLRPPHIANPNVILEEAFNCVDIGTWYVVLL----KPPTISAMD-------- 217 +R P I+NP+V+ + + +D G WY +P +S+++ Sbjct: 635 -------GVVRRPVISNPDVLATDDYAVIDAGGWYWAASPHRGEPHMLSSINRMVNSGRP 687 Query: 218 -LDDVRAVTHAINGGRDNKEWEKSSSLEDRISHTKRIKKVM 257 ++VR VT AINGG + L++R HT RI +V+ Sbjct: 688 TRENVRMVTLAINGGE--------TGLDNREFHTDRIYRVV 720 >ref|YP_001862228.1| peptidase M23B [Burkholderia phymatum STM815] gb|ACC75182.1| peptidase M23B [Burkholderia phymatum STM815] Length = 746 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 84/235 (35%), Positives = 120/235 (51%), Gaps = 42/235 (17%) Query: 54 RNTPSHGTSEELREKYRAEINKCCFKYGLNSRLRMAHFFGQAAVESESLNRMLERSDG-- 111 R TP LRE+YR ++N+ KY +N+ R+ HF GQ AVES SL RM+E S Sbjct: 521 RETPD---PSGLRERYRKQLNQVTRKYFINTATRLTHFLGQGAVESFSLARMVEASTTHF 577 Query: 112 -SQYEGRTD-----------------IGNITAGDGRKFKGRGIKQLTGRYNYAEYWSFRG 153 + + TD +GN+ GDG K++GRG+KQLTG NYA YW +RG Sbjct: 578 HASIQPETDGYYNDLHDTYFNYLENRLGNVDTGDGIKYRGRGMKQLTGLANYASYWVYRG 637 Query: 154 WLKKGGDFDVGWDVKKKDGTNESKPLRPPHIANPNVILEEAFNCVDIGTWY----VVLLK 209 WL K +D W +K +R P+IA+P + + +NC+D G WY L+ Sbjct: 638 WLDK-STYDPSWWLKTHGH------IRKPNIADPQRVSTDPYNCIDTGGWYWTAGATRLQ 690 Query: 210 PPTISA------MDLDDVRAVTHAINGGRDNKEWEKSSSLEDRISHTKRIKKVML 258 TI++ + V V+ AING N + + L DR + T RI K+++ Sbjct: 691 NKTINSVISEGELSHQAVFDVSAAING--INSHTHEPNGLGDRENQTLRISKIIV 743 >ref|ZP_02305859.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. UG05-0454] gb|EDR61703.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 561 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 83/262 (31%), Positives = 118/262 (45%), Gaps = 62/262 (23%) Query: 57 PSHGTSEELREKYRAEINKCCFKYGLNSRLRMAHFFGQAAVESESL-------------- 102 P + E EKY IN+ KY +N+ +R AHF GQ AVES+ L Sbjct: 302 PLRKSITEAVEKYGDNINRIMLKYIMNTPIRRAHFIGQGAVESDYLMTIQEVSQKQDIIN 361 Query: 103 -----------NRMLERSDGSQY-EGRTDI------------GNITAG------------ 126 ++ ER G Y E T+I G+ AG Sbjct: 362 GKPVGGDIVQDSKRNERDLGHWYGEVPTEIDVYFSGKKYNKKGSYIAGSYSWSNGNCGDI 421 Query: 127 DGRKFKGRGIKQLTGRYNYAEYWSFRGWLKKGGDFDVGW--DVKKKDGTNESKPLRPPHI 184 D +KF+GRG K LTGR NYA YW +RGWL+ DFD W D + K + +P I Sbjct: 422 DAQKFRGRGFKMLTGRANYASYWVYRGWLQT-NDFDAYWWDDSEYKKKNTKKMKKKPAII 480 Query: 185 ANPNVILEEAFNCVDIGTWYVVLLKPPTISAMDLDDVRAVTHAINGGRDNKEWEKSSS-- 242 +P + E +NC+D G +++ +KP TI +MD DD + + G +N+ E+ + Sbjct: 481 NSPQKVTENEYNCIDTGGYFIRGIKPKTIQSMD-DDKEYIMNKGQGENENRVIERVTKAI 539 Query: 243 ------LEDRISHTKRIKKVML 258 LE R TK+ K +M+ Sbjct: 540 NGADKGLEQRKFFTKKAKGIMI 561 >ref|YP_003567516.1| putative kinase [Yersinia pestis Z176003] gb|ACY61984.1| putative kinase [Yersinia pestis D182038] gb|ADE64254.1| putative kinase [Yersinia pestis Z176003] Length = 766 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 83/262 (31%), Positives = 118/262 (45%), Gaps = 62/262 (23%) Query: 57 PSHGTSEELREKYRAEINKCCFKYGLNSRLRMAHFFGQAAVESESL-------------- 102 P + E EKY IN+ KY +N+ +R AHF GQ AVES+ L Sbjct: 507 PLRKSITEAVEKYGDNINRIMLKYIMNTPIRRAHFIGQGAVESDYLMTIQEVSQKQDIIN 566 Query: 103 -----------NRMLERSDGSQY-EGRTDI------------GNITAG------------ 126 ++ ER G Y E T+I G+ AG Sbjct: 567 GKPVGGDIVQDSKRNERDLGHWYGEVPTEIDVYFSGKKYNKKGSYIAGSYSWSNGNCGDI 626 Query: 127 DGRKFKGRGIKQLTGRYNYAEYWSFRGWLKKGGDFDVGW--DVKKKDGTNESKPLRPPHI 184 D +KF+GRG K LTGR NYA YW +RGWL+ DFD W D + K + +P I Sbjct: 627 DAQKFRGRGFKMLTGRANYASYWVYRGWLQT-NDFDAYWWDDSEYKKKNTKKMKKKPAII 685 Query: 185 ANPNVILEEAFNCVDIGTWYVVLLKPPTISAMDLDDVRAVTHAINGGRDNKEWEKSSS-- 242 +P + E +NC+D G +++ +KP TI +MD DD + + G +N+ E+ + Sbjct: 686 NSPQKVTENEYNCIDTGGYFIRGIKPKTIQSMD-DDKEYIMNKGQGENENRVIERVTKAI 744 Query: 243 ------LEDRISHTKRIKKVML 258 LE R TK+ K +M+ Sbjct: 745 NGADKGLEQRKFFTKKAKGIMI 766 >gb|ACY58218.1| putative kinase [Yersinia pestis D106004] Length = 766 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 83/262 (31%), Positives = 118/262 (45%), Gaps = 62/262 (23%) Query: 57 PSHGTSEELREKYRAEINKCCFKYGLNSRLRMAHFFGQAAVESESL-------------- 102 P + E EKY IN+ KY +N+ +R AHF GQ AVES+ L Sbjct: 507 PLRKSITEAVEKYGDNINRIMLKYIMNTPIRRAHFIGQGAVESDYLMTIQEVSQKQDIIN 566 Query: 103 -----------NRMLERSDGSQY-EGRTDI------------GNITAG------------ 126 ++ ER G Y E T+I G+ AG Sbjct: 567 GKPVGGDIVQDSKRNERDLGHWYGEVPTEIDVYFSGKKYNKKGSYIAGSYSWSNGNCGDI 626 Query: 127 DGRKFKGRGIKQLTGRYNYAEYWSFRGWLKKGGDFDVGW--DVKKKDGTNESKPLRPPHI 184 D +KF+GRG K LTGR NYA YW +RGWL+ DFD W D + K + +P I Sbjct: 627 DAQKFRGRGFKMLTGRANYASYWVYRGWLQT-NDFDAYWWDDSEYKKKNTKKMKKKPAII 685 Query: 185 ANPNVILEEAFNCVDIGTWYVVLLKPPTISAMDLDDVRAVTHAINGGRDNKEWEKSSS-- 242 +P + E +NC+D G +++ +KP TI +MD DD + + G +N+ E+ + Sbjct: 686 NSPQKVTENEYNCIDTGGYFIRGIKPKTIQSMD-DDKEYIMNKGQGENENRVIERVTKAI 744 Query: 243 ------LEDRISHTKRIKKVML 258 LE R TK+ K +M+ Sbjct: 745 NGADKGLEQRKFFTKKAKGIMI 766