BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2419.p (428 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773692.1| glycine/D-amino acid oxidase [Herbaspirillum... 725 0.0 ref|YP_001889614.1| FAD dependent oxidoreductase [Burkholderia p... 687 0.0 ref|YP_004348799.1| FAD dependent oxidoreductase [Burkholderia g... 676 0.0 ref|YP_001816054.1| FAD dependent oxidoreductase [Burkholderia a... 672 0.0 ref|YP_778240.1| FAD dependent oxidoreductase [Burkholderia ambi... 671 0.0 >ref|YP_003773692.1| glycine/D-amino acid oxidase [Herbaspirillum seropedicae SmR1] gb|ADJ61784.1| glycine/D-amino acid oxidase (deaminating) protein [Herbaspirillum seropedicae SmR1] Length = 425 Score = 725 bits (1871), Expect = 0.0, Method: Composition-based stats. Identities = 362/425 (85%), Positives = 387/425 (91%) Query: 4 LMQLKSYWLDTSSPFVSTHTALPGDGCDVLVVGGGITGSTAALALARKGARVVVCEADIV 63 +MQLKSYWLDTS FVS LP CDV+VVGGGITGS AALALARKGARVVVCEADIV Sbjct: 1 MMQLKSYWLDTSPAFVSQTQTLPEGACDVVVVGGGITGSAAALALARKGARVVVCEADIV 60 Query: 64 GGAASGRNGGMCNNGFAQDYAALSQRLGTEWANRLYRAFDAGVDMVERLVREESIDCSFA 123 GGAASGRNGGMCNNGFAQDYA LSQRLG EWANRLYRAFDAGVD VERLVREESIDCSFA Sbjct: 61 GGAASGRNGGMCNNGFAQDYATLSQRLGVEWANRLYRAFDAGVDTVERLVREESIDCSFA 120 Query: 124 RYGKLKLAAKPEHVDKLARSQALLAANVDADTRLITRAELRDELGSDRYYGGLLMEKSAG 183 R+GKLKLAAKPEHVDKLARSQ LLA +VD DTRL++RA+LRDELGSDRY+GGLLM KSAG Sbjct: 121 RHGKLKLAAKPEHVDKLARSQELLARHVDGDTRLLSRAQLRDELGSDRYHGGLLMHKSAG 180 Query: 184 MHVGRYVRGLAHAAQRRGAIYLEHTPVLGLKAQGGGYQVQTRAGSLRASQVLVSSGISQV 243 MHVGRYVRGLA AAQRRGA+YLE TPVLG++A+ G Y V+T AG L A QVL++SGISQV Sbjct: 181 MHVGRYVRGLAQAAQRRGALYLERTPVLGIEAKNGRYAVRTSAGVLHAGQVLLASGISQV 240 Query: 244 GPFGWIRRRIVPVGAFLIVTEPLPAELLAQLLPTRRMYTDTKNFVNYFRATPDNRLLFGG 303 GPFGWIRRRIVPVGAFLIVTEPLP LL QLLPT+RMYTDTKNFVNYFRATPD RLLFGG Sbjct: 241 GPFGWIRRRIVPVGAFLIVTEPLPGALLKQLLPTQRMYTDTKNFVNYFRATPDQRLLFGG 300 Query: 304 RARFAVSNPQSDARSGEILRSQMLEVFPQLAKVRIDYCWGGMVDMTVDRLPRAGQRDGVF 363 RARFA SNPQSDARSGEILR+QMLEVFP LA+ RIDYCWGGMVDMT DRLPRAGQRDG++ Sbjct: 301 RARFAASNPQSDARSGEILRAQMLEVFPALAQTRIDYCWGGMVDMTTDRLPRAGQRDGLY 360 Query: 364 YSMGYSGHGTHMASLMGTLMAEVMDGRADLNPWKDFDWPAIPGHLGKPWFLPLVGAWYRL 423 YSMGYSGHGTHMA+LMG++MAE+MDG A+LNPWKDFDWPAIPGH GKPWFLP VGAWYRL Sbjct: 361 YSMGYSGHGTHMATLMGSMMAEIMDGHAELNPWKDFDWPAIPGHFGKPWFLPFVGAWYRL 420 Query: 424 KDWLQ 428 KD LQ Sbjct: 421 KDRLQ 425 >ref|YP_001889614.1| FAD dependent oxidoreductase [Burkholderia phytofirmans PsJN] gb|ACD20243.1| FAD dependent oxidoreductase [Burkholderia phytofirmans PsJN] Length = 425 Score = 687 bits (1774), Expect = 0.0, Method: Composition-based stats. Identities = 336/425 (79%), Positives = 369/425 (86%), Gaps = 1/425 (0%) Query: 5 MQLKSYWLDTSSPFVSTHTALPGDGCDVLVVGGGITGSTAALALARKGARVVVCEADIVG 64 M+ SYWLDTS PFV L G+ CDV+VVG GITGS AALALARKGARVVVCEA VG Sbjct: 1 MRFSSYWLDTSEPFVGNAPDLHGERCDVIVVGAGITGSAAALALARKGARVVVCEAGTVG 60 Query: 65 GAASGRNGGMCNNGFAQDYAALSQRLGTEWANRLYRAFDAGVDMVERLVREESIDCSFAR 124 AASGRNGGMCNNGFAQDYA+LSQR+G E ANRLY AFDAGVD VERLVREESIDC F R Sbjct: 61 QAASGRNGGMCNNGFAQDYASLSQRIGVELANRLYLAFDAGVDTVERLVREESIDCDFVR 120 Query: 125 YGKLKLAAKPEHVDKLARSQALLAANVDADTRLITRAELRDELGSDRYYGGLLMEKSAGM 184 GKLKLAAKPEH DKLARSQALLAA VD DTRL+T+AELRDE+GSDRY+GGL+ EKSAGM Sbjct: 121 RGKLKLAAKPEHFDKLARSQALLAAGVDPDTRLVTKAELRDEIGSDRYHGGLIFEKSAGM 180 Query: 185 HVGRYVRGLAHAAQRRGAIYLEHTPVLGLKAQ-GGGYQVQTRAGSLRASQVLVSSGISQV 243 HVGRYVRGLA AAQ RGA LEH PVL L+ + GG Y +T G +RA QVL++SGISQ+ Sbjct: 181 HVGRYVRGLATAAQARGAQILEHAPVLDLRRESGGAYVARTPRGEIRAPQVLLASGISQL 240 Query: 244 GPFGWIRRRIVPVGAFLIVTEPLPAELLAQLLPTRRMYTDTKNFVNYFRATPDNRLLFGG 303 GPFGW+RRRIVPVGAF+IVTEPLP + L +LLPTRRM TDTKNFVN+FR TPDNR+LFGG Sbjct: 241 GPFGWVRRRIVPVGAFIIVTEPLPTQRLDRLLPTRRMATDTKNFVNFFRVTPDNRILFGG 300 Query: 304 RARFAVSNPQSDARSGEILRSQMLEVFPQLAKVRIDYCWGGMVDMTVDRLPRAGQRDGVF 363 RARFA SNP+SD +SG ILR QM+ VFP+LA VRIDYCWGGMVDMT +RLPRAG+RDG++ Sbjct: 301 RARFATSNPRSDEKSGMILRQQMIAVFPELADVRIDYCWGGMVDMTANRLPRAGERDGMY 360 Query: 364 YSMGYSGHGTHMASLMGTLMAEVMDGRADLNPWKDFDWPAIPGHLGKPWFLPLVGAWYRL 423 YSMGYSGHGTHMA+LMGTLMAE+MDGRADLNPWKDFDWPAIPGH GKPWFLP VGAWYRL Sbjct: 361 YSMGYSGHGTHMATLMGTLMAEIMDGRADLNPWKDFDWPAIPGHFGKPWFLPFVGAWYRL 420 Query: 424 KDWLQ 428 KD LQ Sbjct: 421 KDTLQ 425 >ref|YP_004348799.1| FAD dependent oxidoreductase [Burkholderia gladioli BSR3] gb|AEA63287.1| FAD dependent oxidoreductase [Burkholderia gladioli BSR3] Length = 425 Score = 676 bits (1743), Expect = 0.0, Method: Composition-based stats. Identities = 331/425 (77%), Positives = 372/425 (87%), Gaps = 1/425 (0%) Query: 5 MQLKSYWLDTSSPFVSTHTALPGDGCDVLVVGGGITGSTAALALARKGARVVVCEADIVG 64 M+ SYWLDT PF ALPG CDVLVVG GITGS AALALARKGA VVVCEA VG Sbjct: 1 MRFSSYWLDTCEPFAGRSRALPGGSCDVLVVGAGITGSAAALALARKGASVVVCEAGTVG 60 Query: 65 GAASGRNGGMCNNGFAQDYAALSQRLGTEWANRLYRAFDAGVDMVERLVREESIDCSFAR 124 AASGRNGGMCNNGFAQDYA+LS+RLGTE ANRLY AFDAGVDMVERL+REESIDC FAR Sbjct: 61 QAASGRNGGMCNNGFAQDYASLSRRLGTELANRLYLAFDAGVDMVERLIREESIDCDFAR 120 Query: 125 YGKLKLAAKPEHVDKLARSQALLAANVDADTRLITRAELRDELGSDRYYGGLLMEKSAGM 184 +GKLKLAAKPEH D+L RSQALLAA VD DTR++++AELRDE+GSDRY+GGLL+ KSAGM Sbjct: 121 FGKLKLAAKPEHYDRLVRSQALLAAGVDPDTRVVSKAELRDEIGSDRYHGGLLLSKSAGM 180 Query: 185 HVGRYVRGLAHAAQRRGAIYLEHTPVLGLKAQGGG-YQVQTRAGSLRASQVLVSSGISQV 243 HVGRYVRGLA+AAQ RGA LEHTPVLGL Q GG Y +T G++RA QVL++SGISQ+ Sbjct: 181 HVGRYVRGLANAAQARGAHVLEHTPVLGLVRQAGGAYVARTPLGAIRARQVLLASGISQI 240 Query: 244 GPFGWIRRRIVPVGAFLIVTEPLPAELLAQLLPTRRMYTDTKNFVNYFRATPDNRLLFGG 303 GPFGWIRRRIVPVGAF+IVTEPLP +L +LLPTRRM TDT+NFVN+FR TPD RLLFGG Sbjct: 241 GPFGWIRRRIVPVGAFIIVTEPLPRAVLDRLLPTRRMVTDTRNFVNFFRETPDGRLLFGG 300 Query: 304 RARFAVSNPQSDARSGEILRSQMLEVFPQLAKVRIDYCWGGMVDMTVDRLPRAGQRDGVF 363 RARFA S+P+SD +SG IL+ QM+ VFP+LA RIDYCWGGMVDMT +RLPRAG+RDG++ Sbjct: 301 RARFAASDPRSDEKSGRILQRQMVAVFPELATARIDYCWGGMVDMTANRLPRAGERDGMY 360 Query: 364 YSMGYSGHGTHMASLMGTLMAEVMDGRADLNPWKDFDWPAIPGHLGKPWFLPLVGAWYRL 423 YSMGYSGHGTHMA+LMGTLMAE+MDGRADLNPW+ FDWPAIPGH GKPWFLP+VGAWYR+ Sbjct: 361 YSMGYSGHGTHMATLMGTLMAEIMDGRADLNPWRGFDWPAIPGHFGKPWFLPMVGAWYRI 420 Query: 424 KDWLQ 428 KD+LQ Sbjct: 421 KDFLQ 425 >ref|YP_001816054.1| FAD dependent oxidoreductase [Burkholderia ambifaria MC40-6] gb|ACB68501.1| FAD dependent oxidoreductase [Burkholderia ambifaria MC40-6] Length = 441 Score = 672 bits (1734), Expect = 0.0, Method: Composition-based stats. Identities = 344/429 (80%), Positives = 375/429 (87%), Gaps = 1/429 (0%) Query: 1 MELLMQLKSYWLDTSSPFVSTHTALPGDGCDVLVVGGGITGSTAALALARKGARVVVCEA 60 ME LM+ SYWLDTS PFVS T P CDV+VVGGGITGS AALALA+KGARVVVCEA Sbjct: 13 MECLMRFGSYWLDTSEPFVSRSTERPDGNCDVVVVGGGITGSAAALALAKKGARVVVCEA 72 Query: 61 DIVGGAASGRNGGMCNNGFAQDYAALSQRLGTEWANRLYRAFDAGVDMVERLVREESIDC 120 VG AASGRNGGMCNNGFAQDYA+LSQR+GTE ANRLY AFDAGVD VERLVREESIDC Sbjct: 73 GTVGQAASGRNGGMCNNGFAQDYASLSQRIGTELANRLYLAFDAGVDTVERLVREESIDC 132 Query: 121 SFARYGKLKLAAKPEHVDKLARSQALLAANVDADTRLITRAELRDELGSDRYYGGLLMEK 180 FAR GKLKLAAKPEH DKL RS ALLAA+VD DTRL+T+AELRDE+GS+RY+GGL+ EK Sbjct: 133 DFARRGKLKLAAKPEHYDKLVRSHALLAASVDPDTRLVTKAELRDEIGSNRYHGGLIFEK 192 Query: 181 SAGMHVGRYVRGLAHAAQRRGAIYLEHTPVLGL-KAQGGGYQVQTRAGSLRASQVLVSSG 239 SAGMHVGRYVRGLA+AAQ RGA LEH PVLG+ + GG Y V+T G +RA QVL++SG Sbjct: 193 SAGMHVGRYVRGLANAAQARGAHILEHAPVLGMTREAGGAYAVRTPLGEIRARQVLLASG 252 Query: 240 ISQVGPFGWIRRRIVPVGAFLIVTEPLPAELLAQLLPTRRMYTDTKNFVNYFRATPDNRL 299 ISQVGPFGWIRRRIVPVGAF+IVTEPLP ELL +LLPTRRM TDTKNFVN+FR TPDNR+ Sbjct: 253 ISQVGPFGWIRRRIVPVGAFIIVTEPLPRELLDRLLPTRRMVTDTKNFVNFFRVTPDNRM 312 Query: 300 LFGGRARFAVSNPQSDARSGEILRSQMLEVFPQLAKVRIDYCWGGMVDMTVDRLPRAGQR 359 LFGGRARFA SNP+SD +SG ILR QM VFP+LA VRIDYCWGGMVDMT +RLPRAG+R Sbjct: 313 LFGGRARFAASNPRSDEKSGAILRQQMAAVFPELADVRIDYCWGGMVDMTANRLPRAGER 372 Query: 360 DGVFYSMGYSGHGTHMASLMGTLMAEVMDGRADLNPWKDFDWPAIPGHLGKPWFLPLVGA 419 DGV+YSMGYSGHGTHMA+LMGTLMAE+MDGRADLNPWK FDWPAIPGH GKPWFLP VGA Sbjct: 373 DGVYYSMGYSGHGTHMATLMGTLMAEIMDGRADLNPWKSFDWPAIPGHFGKPWFLPFVGA 432 Query: 420 WYRLKDWLQ 428 WYRLKD LQ Sbjct: 433 WYRLKDTLQ 441 >ref|YP_778240.1| FAD dependent oxidoreductase [Burkholderia ambifaria AMMD] gb|ABI91906.1| FAD dependent oxidoreductase [Burkholderia ambifaria AMMD] Length = 441 Score = 671 bits (1730), Expect = 0.0, Method: Composition-based stats. Identities = 345/429 (80%), Positives = 375/429 (87%), Gaps = 1/429 (0%) Query: 1 MELLMQLKSYWLDTSSPFVSTHTALPGDGCDVLVVGGGITGSTAALALARKGARVVVCEA 60 ME +M+ SYWLDTS PFVS T P CDV+VVGGGITGS AALALA+KGARV+VCEA Sbjct: 13 MECVMRFGSYWLDTSEPFVSRSTERPDGNCDVVVVGGGITGSAAALALAKKGARVIVCEA 72 Query: 61 DIVGGAASGRNGGMCNNGFAQDYAALSQRLGTEWANRLYRAFDAGVDMVERLVREESIDC 120 VG AASGRNGGMCNNGFAQDYA+LSQR+GTE ANRLY AFDAGVD VERLVREESIDC Sbjct: 73 GTVGQAASGRNGGMCNNGFAQDYASLSQRIGTELANRLYLAFDAGVDTVERLVREESIDC 132 Query: 121 SFARYGKLKLAAKPEHVDKLARSQALLAANVDADTRLITRAELRDELGSDRYYGGLLMEK 180 F R GKLKLAAKPEH DKLARSQALLAA+VD DTRL+T+AELRDE+GS+RY+GGLL K Sbjct: 133 DFVRRGKLKLAAKPEHYDKLARSQALLAASVDPDTRLVTKAELRDEIGSNRYHGGLLFGK 192 Query: 181 SAGMHVGRYVRGLAHAAQRRGAIYLEHTPVLGLKAQGGG-YQVQTRAGSLRASQVLVSSG 239 SAGMHVGRYVRGLA AAQ RGA LEH PVLGL+ Q GG Y VQT G +RA QVL++SG Sbjct: 193 SAGMHVGRYVRGLARAAQARGAHILEHAPVLGLQRQAGGAYAVQTPLGEIRARQVLLASG 252 Query: 240 ISQVGPFGWIRRRIVPVGAFLIVTEPLPAELLAQLLPTRRMYTDTKNFVNYFRATPDNRL 299 ISQVGPFGW+RRRIVPVGAF+IVTEPLP ELL +LLPTRRM TDTKNFVN+FR TPDNR+ Sbjct: 253 ISQVGPFGWVRRRIVPVGAFIIVTEPLPRELLDRLLPTRRMVTDTKNFVNFFRVTPDNRM 312 Query: 300 LFGGRARFAVSNPQSDARSGEILRSQMLEVFPQLAKVRIDYCWGGMVDMTVDRLPRAGQR 359 LFGGRARFA SNP+SD +SG ILR QM VFP+LA VRIDYCWGGMVDMT +RLPRAGQR Sbjct: 313 LFGGRARFAASNPRSDEKSGAILRQQMAAVFPELAAVRIDYCWGGMVDMTANRLPRAGQR 372 Query: 360 DGVFYSMGYSGHGTHMASLMGTLMAEVMDGRADLNPWKDFDWPAIPGHLGKPWFLPLVGA 419 DGV+YSMGYSGHGTHMA+LMGTLMAE+MDGRADLNPW+ FDWPAIPGH GKPWFLP VGA Sbjct: 373 DGVYYSMGYSGHGTHMATLMGTLMAEIMDGRADLNPWQSFDWPAIPGHFGKPWFLPFVGA 432 Query: 420 WYRLKDWLQ 428 WYRLKD LQ Sbjct: 433 WYRLKDTLQ 441